Wall clock time and date at job start Tue Mar 31 2020 09:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 H 1.09001 * 109.46974 * 305.00123 * 3 2 1 5 5 C 1.52993 * 109.47260 * 64.99594 * 3 2 1 6 6 C 1.53001 * 109.47566 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47018 * 300.00836 * 6 5 3 8 8 C 1.52996 * 109.47512 * 59.99559 * 7 6 5 9 9 H 1.08991 * 109.47050 * 60.00099 * 8 7 6 10 10 N 1.46495 * 109.47040 * 180.02562 * 8 7 6 11 11 S 1.65604 * 120.00124 * 264.23162 * 10 8 7 12 12 O 1.42100 * 106.39744 * 49.05022 * 11 10 8 13 13 O 1.42098 * 106.40518 * 181.97006 * 11 10 8 14 14 N 1.65596 * 107.21684 * 295.51202 * 11 10 8 15 15 C 1.46507 * 119.99963 * 96.08502 * 14 11 10 16 16 C 1.46497 * 119.99987 * 276.08348 * 14 11 10 17 17 C 1.50704 * 109.47222 * 96.69780 * 16 14 11 18 18 H 1.08006 * 119.99685 * 4.93073 * 17 16 14 19 19 C 1.37873 * 120.00336 * 184.93511 * 17 16 14 20 20 N 1.31516 * 120.00020 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99630 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47176 * 90.00214 * 21 19 17 23 23 H 1.48504 * 109.46906 * 209.99842 * 21 19 17 24 24 H 1.48493 * 109.47622 * 330.00177 * 21 19 17 25 25 C 1.52994 * 109.47465 * 185.00283 * 3 2 1 26 26 H 1.08995 * 109.47713 * 60.00457 * 1 2 3 27 27 H 1.09005 * 109.47200 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47439 * 299.99611 * 1 2 3 29 29 H 1.09000 * 109.47635 * 239.99892 * 2 1 3 30 30 H 1.09004 * 109.47677 * 119.99614 * 2 1 3 31 31 H 1.08998 * 109.47403 * 300.00548 * 5 3 2 32 32 H 1.09003 * 109.46980 * 60.00819 * 5 3 2 33 33 H 1.09001 * 109.47008 * 60.00321 * 6 5 3 34 34 H 1.08996 * 109.47975 * 180.02562 * 6 5 3 35 35 H 1.09003 * 109.47045 * 299.99113 * 7 6 5 36 36 H 1.09005 * 109.46841 * 179.97438 * 7 6 5 37 37 H 0.97000 * 120.00303 * 84.23652 * 10 8 7 38 38 H 1.09001 * 109.46847 * 89.99617 * 15 14 11 39 39 H 1.08998 * 109.47106 * 209.99434 * 15 14 11 40 40 H 1.09001 * 109.47091 * 329.99933 * 15 14 11 41 41 H 1.09007 * 109.47259 * 216.69007 * 16 14 11 42 42 H 1.08995 * 109.47496 * 336.69333 * 16 14 11 43 43 H 0.97004 * 119.99649 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.47527 * 59.99926 * 25 3 2 45 45 H 1.09003 * 109.47128 * 299.99396 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3072 6 6 2.1446 3.5693 1.3070 7 6 3.6694 3.5717 1.1809 8 6 4.0742 2.8876 -0.1264 9 1 3.6392 3.4264 -0.9681 10 7 5.5342 2.8894 -0.2467 11 16 6.2919 4.0779 -1.1161 12 8 5.7527 5.3121 -0.6630 13 8 7.6803 3.7771 -1.0817 14 7 5.8160 3.9106 -2.6933 15 6 4.7090 4.7168 -3.2139 16 6 6.5020 2.9566 -3.5681 17 6 5.7250 1.6660 -3.6112 18 1 4.7719 1.5925 -3.1086 19 6 6.2309 0.5791 -4.2920 20 7 5.5530 -0.5473 -4.3292 21 14 7.8792 0.7064 -5.1617 22 1 8.9638 0.3118 -4.2272 23 1 7.8882 -0.1972 -6.3402 24 1 8.0961 2.1056 -5.6092 25 6 3.5647 1.4444 -0.1258 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.5489 2.1253 1.3968 32 1 2.0698 1.5876 2.1491 33 1 1.7096 4.1081 0.4652 34 1 1.8566 4.0566 2.2385 35 1 4.1045 3.0329 2.0228 36 1 4.0323 4.5995 1.1803 37 1 6.0571 2.1944 0.1827 38 1 5.0990 5.6496 -3.6211 39 1 4.1952 4.1638 -4.0002 40 1 4.0093 4.9368 -2.4076 41 1 6.5730 3.3716 -4.5736 42 1 7.5034 2.7651 -3.1826 43 1 5.9092 -1.3121 -4.8079 44 1 3.8531 0.9571 -1.0572 45 1 3.9994 0.9054 0.7161 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077403498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:03 Heat of formation + Delta-G solvation = -108.660705 kcal Electronic energy + Delta-G solvation = -25086.395879 eV Core-core repulsion = 21650.319936 eV Total energy + Delta-G solvation = -3436.075943 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.01841 -36.67900 -35.64562 -35.27787 -34.89756 -32.65941 -32.45305 -29.51716 -28.43390 -28.04713 -25.18575 -23.63174 -22.24258 -21.93501 -20.56116 -19.88942 -18.66239 -17.40599 -16.76233 -16.69040 -16.05904 -15.27308 -14.76284 -14.59705 -14.19063 -13.98164 -13.70244 -13.66895 -13.37216 -13.08070 -12.87068 -12.56219 -12.39166 -12.31398 -11.84079 -11.71822 -11.59326 -11.55985 -11.34041 -11.27931 -11.24920 -11.11973 -10.92104 -10.76230 -10.69918 -10.48555 -10.34012 -10.25799 -10.03991 -9.91712 -9.59283 -8.99332 -8.66015 -8.11109 -6.17846 -4.17748 1.26675 3.25170 3.32134 3.36508 3.46543 4.12341 4.34041 4.73839 4.85564 4.89353 5.03172 5.14462 5.17092 5.21656 5.28514 5.44757 5.47614 5.53146 5.64672 5.68355 5.76484 5.81231 5.81479 5.97838 5.99270 6.02490 6.14382 6.15892 6.18617 6.26069 6.30487 6.34672 6.43239 6.43564 6.57445 6.68959 6.73495 6.82207 7.06497 7.29046 7.49401 7.57231 8.39777 8.86570 9.43522 10.94140 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.006390 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.427518 B = 4380.937207 C = 5970.547991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.071 0.929 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.138 4.138 8 C 0.166 3.834 9 H 0.078 0.922 10 N -1.116 6.116 11 S 2.789 3.211 12 O -0.997 6.997 13 O -0.988 6.988 14 N -0.992 5.992 15 C 0.103 3.897 16 C 0.215 3.785 17 C -0.539 4.539 18 H 0.083 0.917 19 C 0.076 3.924 20 N -0.892 5.892 21 Si 0.867 3.133 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.264 1.264 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.034 0.966 42 H 0.041 0.959 43 H 0.265 0.735 44 H 0.088 0.912 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.283 4.727 9.211 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.090 0.910 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.178 4.178 8 C 0.059 3.941 9 H 0.096 0.904 10 N -0.874 5.874 11 S 2.797 3.203 12 O -0.980 6.980 13 O -0.972 6.972 14 N -0.834 5.834 15 C -0.043 4.043 16 C 0.092 3.908 17 C -0.578 4.578 18 H 0.101 0.899 19 C -0.127 4.127 20 N -0.530 5.530 21 Si 0.694 3.306 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.768 5.364 9.360 13.294 hybrid contribution 0.801 -0.834 -0.574 1.291 sum -6.968 4.530 8.786 12.094 Atomic orbital electron populations 1.21808 0.96300 1.01195 1.01577 1.21550 0.95414 0.96421 1.02372 1.21135 0.95368 0.96000 0.97787 0.91033 1.21679 1.00295 0.95598 0.97760 1.21495 0.95418 0.96848 1.01687 1.22116 0.95819 1.01678 0.98152 1.20588 0.79005 0.97298 0.97238 0.90362 1.55909 1.15074 1.47292 1.69104 1.01602 0.72919 0.73103 0.72685 1.93545 1.80792 1.42939 1.80744 1.93567 1.31489 1.85347 1.86794 1.57396 1.46002 1.51853 1.28120 1.21304 0.88824 0.94170 1.00052 1.19569 0.92837 0.88082 0.90347 1.21449 1.07496 0.94256 1.34591 0.89902 1.24846 0.97064 0.95111 0.95687 1.69885 1.38391 1.02307 1.42415 0.86978 0.84968 0.78742 0.79899 1.19766 1.21057 1.18874 1.21926 0.94618 0.95557 1.03919 0.92795 0.93164 0.92868 0.91285 0.92316 0.92019 0.92158 0.91883 0.92073 0.91723 0.90881 0.75409 0.93678 0.90537 0.92412 0.94761 0.94130 0.92551 0.89333 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 37.15 0.36 -1.20 16 2 C -0.12 -1.43 5.40 -26.73 -0.14 -1.58 16 3 C -0.08 -1.03 2.19 -90.63 -0.20 -1.23 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 5 C -0.12 -1.22 4.96 -26.73 -0.13 -1.35 16 6 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 7 C -0.14 -1.79 5.53 -26.73 -0.15 -1.94 16 8 C 0.17 2.47 2.69 -67.91 -0.18 2.28 16 9 H 0.08 1.20 6.80 -51.93 -0.35 0.84 16 10 N -1.12 -18.51 5.52 -4.87 -0.03 -18.54 16 11 S 2.79 54.08 6.01 -107.50 -0.65 53.44 16 12 O -1.00 -19.74 16.36 -57.17 -0.94 -20.68 16 13 O -0.99 -22.15 16.82 -57.17 -0.96 -23.11 16 14 N -0.99 -19.77 3.23 -123.05 -0.40 -20.17 16 15 C 0.10 1.71 10.16 59.85 0.61 2.32 16 16 C 0.22 4.97 4.50 -5.19 -0.02 4.94 16 17 C -0.54 -13.89 9.92 -34.44 -0.34 -14.24 16 18 H 0.08 2.24 7.82 -52.48 -0.41 1.82 16 19 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 21 Si 0.87 20.65 27.37 -169.99 -4.65 16.00 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.26 -6.05 6.69 56.52 0.38 -5.67 16 25 C -0.12 -1.75 4.74 -26.71 -0.13 -1.88 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.03 7.72 -51.93 -0.40 0.63 16 37 H 0.41 6.34 8.84 -34.47 -0.30 6.04 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 40 H 0.06 0.86 6.63 -51.93 -0.34 0.51 16 41 H 0.03 0.78 7.52 -51.93 -0.39 0.39 16 42 H 0.04 0.98 6.14 -51.93 -0.32 0.66 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.09 1.58 7.90 -51.93 -0.41 1.17 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -30.58 359.76 -9.85 -40.43 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.84 Total: 5.16 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.59 Total: -13.32 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: 0.35 Total: -63.35 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -1.90 Total: -43.78 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.65 Total: 16.00 kcal Atomic # 16 Polarization: 54.08 SS G_CDS: -0.65 Total: 53.44 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.58 -9.85 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077403498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.227 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds