Wall clock time and date at job start Tue Mar 31 2020 08:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 C 1.53006 * 109.46738 * 119.99795 * 2 1 3 5 5 N 1.46905 * 109.46840 * 174.99869 * 4 2 1 6 6 C 1.48233 * 111.00058 * 289.94219 * 5 4 2 7 7 C 1.51307 * 104.76979 * 267.40246 * 6 5 4 8 8 O 1.21275 * 125.74853 * 163.21527 * 7 6 5 9 9 N 1.34853 * 108.49810 * 343.24259 * 7 6 5 10 10 C 1.46797 * 109.59156 * 359.56888 * 9 7 6 11 11 H 1.08994 * 110.11879 * 258.36888 * 10 9 7 12 12 C 1.50699 * 110.11737 * 136.77186 * 10 9 7 13 13 C 1.38304 * 119.93228 * 321.20590 * 12 10 9 14 14 C 1.38100 * 120.06724 * 179.97438 * 13 12 10 15 15 C 1.38877 * 119.93381 * 359.97438 * 14 13 12 16 16 O 1.35744 * 120.06737 * 180.02562 * 15 14 13 17 17 C 1.34821 * 117.00314 * 353.99279 * 16 15 14 18 18 H 1.07994 * 120.00301 * 2.30904 * 17 16 15 19 19 C 1.38659 * 120.00073 * 182.31131 * 17 16 15 20 20 N 1.31561 * 120.00147 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00028 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47014 * 59.99994 * 21 19 17 23 23 H 1.48500 * 109.47260 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47265 * 300.00415 * 21 19 17 25 25 C 1.38878 * 119.85856 * 359.97438 * 15 14 13 26 26 C 1.38097 * 119.93384 * 359.97438 * 25 15 14 27 27 H 1.09007 * 109.47275 * 300.00272 * 1 2 3 28 28 H 1.08997 * 109.47285 * 60.00047 * 1 2 3 29 29 H 1.09003 * 109.47698 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47126 * 239.99676 * 2 1 3 31 31 H 1.08999 * 109.46933 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46969 * 300.00146 * 3 2 1 33 33 H 1.09007 * 109.46910 * 60.00141 * 3 2 1 34 34 H 1.09004 * 109.47059 * 55.00056 * 4 2 1 35 35 H 1.09002 * 109.47312 * 294.99772 * 4 2 1 36 36 H 1.09001 * 110.38200 * 148.57842 * 6 5 4 37 37 H 1.09001 * 110.47232 * 26.27731 * 6 5 4 38 38 H 0.97004 * 125.19920 * 179.60412 * 9 7 6 39 39 H 1.08003 * 119.96216 * 0.25157 * 13 12 10 40 40 H 1.08001 * 120.03111 * 179.97438 * 14 13 12 41 41 H 0.96999 * 120.00152 * 179.97438 * 20 19 17 42 42 H 1.08008 * 120.03142 * 179.97438 * 25 15 14 43 43 H 1.08001 * 119.96468 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 3.9259 -1.7821 0.1386 7 6 4.0599 -3.1088 0.8537 8 8 4.1056 -4.1983 0.3230 9 7 4.1193 -2.8755 2.1806 10 6 4.0426 -1.4310 2.4303 11 1 5.0354 -1.0338 2.6414 12 6 3.1171 -1.1534 3.5868 13 6 1.9563 -1.8907 3.7341 14 6 1.1065 -1.6390 4.7932 15 6 1.4187 -0.6447 5.7111 16 8 0.5856 -0.3954 6.7534 17 6 -0.5871 -1.0602 6.7723 18 1 -0.8113 -1.7818 6.0007 19 6 -1.5056 -0.8174 7.7823 20 7 -1.2325 0.0613 8.7225 21 14 -3.1308 -1.7380 7.8080 22 1 -2.8716 -3.1973 7.9019 23 1 -3.9288 -1.3010 8.9816 24 1 -3.8836 -1.4483 6.5612 25 6 2.5857 0.0932 5.5610 26 6 3.4319 -0.1640 4.5004 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6052 -1.7198 1.2953 35 1 1.7515 -0.1583 2.1371 36 1 4.8839 -1.4810 -0.2855 37 1 3.1692 -1.8469 -0.6433 38 1 4.2008 -3.5580 2.8651 39 1 1.7165 -2.6671 3.0227 40 1 0.2000 -2.2148 4.9074 41 1 -1.8751 0.2315 9.4288 42 1 2.8310 0.8674 6.2730 43 1 4.3393 0.4098 4.3830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077474529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:56 Heat of formation + Delta-G solvation = -42.964877 kcal Electronic energy + Delta-G solvation = -25351.514915 eV Core-core repulsion = 21782.843806 eV Total energy + Delta-G solvation = -3568.671109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27192 -40.65037 -39.01691 -37.81361 -36.56510 -34.34236 -33.26916 -31.92928 -31.67609 -28.50943 -27.90179 -27.44788 -26.92373 -23.75287 -23.65422 -22.27084 -21.76045 -20.57262 -19.88685 -18.92393 -18.45342 -17.64981 -16.70309 -16.46121 -16.22001 -16.07753 -15.95860 -15.75640 -15.49170 -15.27873 -14.94798 -14.67212 -14.43860 -14.28702 -13.93811 -13.65051 -13.52089 -13.26493 -13.07633 -12.84146 -12.75138 -12.46846 -12.42655 -12.31318 -12.17548 -11.90514 -11.75359 -11.39681 -11.37487 -11.21927 -10.82064 -10.32238 -9.85706 -9.76450 -8.98269 -8.50182 -6.17914 0.52032 0.56682 1.33384 1.41588 1.42618 1.48641 2.14731 2.22813 2.59470 2.90829 3.16397 3.43616 3.45850 3.60702 3.81306 3.98206 4.04370 4.11681 4.23720 4.30433 4.45528 4.50689 4.56910 4.65001 4.72245 4.73902 4.85488 4.87878 4.98066 5.07386 5.09846 5.17131 5.21189 5.23928 5.30199 5.41640 5.49993 5.56843 5.60507 5.67017 5.70286 5.91075 5.99220 6.03788 6.12434 6.94671 7.09585 7.73487 8.72165 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.003931 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.287348 B = 7120.378318 C = 7506.599153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.043 3.957 5 N -0.475 5.475 6 C 0.005 3.995 7 C 0.492 3.508 8 O -0.576 6.576 9 N -0.736 5.736 10 C 0.338 3.662 11 H 0.137 0.863 12 C -0.186 4.186 13 C -0.043 4.043 14 C -0.244 4.244 15 C 0.126 3.874 16 O -0.227 6.227 17 C -0.413 4.413 18 H 0.099 0.901 19 C -0.018 4.018 20 N -0.916 5.916 21 Si 1.013 2.987 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.258 1.258 25 C -0.202 4.202 26 C -0.032 4.032 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.116 0.884 38 H 0.418 0.582 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.273 0.727 42 H 0.118 0.882 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 0.311 -17.130 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.191 4.191 4 C -0.085 4.085 5 N -0.199 5.199 6 C -0.125 4.125 7 C 0.278 3.722 8 O -0.455 6.455 9 N -0.394 5.394 10 C 0.146 3.854 11 H 0.154 0.846 12 C -0.188 4.188 13 C -0.062 4.062 14 C -0.263 4.263 15 C 0.074 3.926 16 O -0.133 6.133 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.216 4.216 20 N -0.554 5.554 21 Si 0.833 3.167 22 H -0.184 1.184 23 H -0.195 1.195 24 H -0.183 1.183 25 C -0.221 4.221 26 C -0.051 4.051 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.166 0.834 37 H 0.134 0.866 38 H 0.258 0.742 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.028 0.637 -17.191 19.428 hybrid contribution -1.486 -1.567 1.250 2.495 sum 7.542 -0.931 -15.941 17.660 Atomic orbital electron populations 1.21829 0.95279 1.01533 1.02049 1.21129 0.95183 0.97523 0.96825 1.21688 1.02135 0.94366 1.00927 1.22645 0.86898 0.98949 1.00009 1.65911 1.11728 1.40429 1.01876 1.23389 1.06599 0.86705 0.95853 1.22019 0.74151 0.91922 0.84109 1.90737 1.52652 1.29903 1.72222 1.47103 1.73622 1.10395 1.08288 1.21499 0.98551 0.77257 0.88114 0.84590 1.19551 0.97706 1.01867 0.99630 1.20663 0.93006 0.97556 0.94974 1.21121 1.03367 1.02784 0.99053 1.19981 0.91388 0.93687 0.87511 1.83937 1.27848 1.61415 1.40079 1.21717 0.91988 1.22161 1.13080 0.88328 1.26499 1.03087 0.97804 0.94246 1.70159 1.37726 1.33888 1.13602 0.84721 0.75044 0.78131 0.78827 1.18390 1.19500 1.18267 1.20469 0.95259 1.03665 1.02742 1.20824 0.98293 0.95283 0.90665 0.93834 0.91066 0.93232 0.90049 0.91071 0.92359 0.94265 0.95448 0.90575 0.83430 0.86555 0.74195 0.86612 0.86965 0.91748 0.86371 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.19 71.98 0.66 -2.21 16 2 C -0.09 -1.58 2.90 -10.79 -0.03 -1.62 16 3 C -0.13 -2.30 9.08 71.98 0.65 -1.65 16 4 C 0.04 0.93 2.73 86.30 0.24 1.16 16 5 N -0.48 -8.51 4.99 -883.40 -4.41 -12.92 16 6 C 0.01 0.08 6.46 85.49 0.55 0.63 16 7 C 0.49 11.42 8.47 87.84 0.74 12.17 16 8 O -0.58 -18.31 18.03 -3.01 -0.05 -18.37 16 9 N -0.74 -15.20 5.23 -452.18 -2.37 -17.57 16 10 C 0.34 6.45 3.99 128.11 0.51 6.96 16 11 H 0.14 1.98 8.03 -2.39 -0.02 1.96 16 12 C -0.19 -4.80 3.74 -19.83 -0.07 -4.88 16 13 C -0.04 -1.35 7.05 22.25 0.16 -1.20 16 14 C -0.24 -9.94 9.16 22.39 0.21 -9.73 16 15 C 0.13 5.81 6.65 22.58 0.15 5.96 16 16 O -0.23 -13.07 9.76 -22.58 -0.22 -13.29 16 17 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 18 H 0.10 5.14 5.21 -2.91 -0.02 5.13 16 19 C -0.02 -1.00 5.49 84.83 0.47 -0.54 16 20 N -0.92 -54.87 13.67 21.62 0.30 -54.57 16 21 Si 1.01 42.02 29.55 68.60 2.03 44.04 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 C -0.20 -7.63 9.99 22.39 0.22 -7.41 16 26 C -0.03 -0.88 9.67 22.25 0.22 -0.66 16 27 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.25 6.45 -2.39 -0.02 1.23 16 31 H 0.07 1.16 7.75 -2.39 -0.02 1.14 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.03 0.66 6.55 -2.38 -0.02 0.65 16 35 H 0.08 2.06 6.06 -2.39 -0.01 2.04 16 36 H 0.15 1.66 8.14 -2.39 -0.02 1.65 16 37 H 0.12 1.75 6.20 -2.39 -0.01 1.74 16 38 H 0.42 8.53 8.96 -92.71 -0.83 7.70 16 39 H 0.12 3.38 6.68 -2.91 -0.02 3.36 16 40 H 0.11 4.83 5.66 -2.91 -0.02 4.81 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.16 3.11 8.04 -2.91 -0.02 3.08 16 Total: -1.00 -70.29 347.42 0.79 -69.50 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.21 Total: 28.90 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 5.31 Total: -25.72 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -6.48 Total: -85.06 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.27 Total: -31.66 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.29 0.79 -69.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077474529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.535 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds