Wall clock time and date at job start Tue Mar 31 2020 09:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47518 * 2 1 4 4 H 1.09002 * 109.50647 * 55.05589 * 3 2 1 5 5 C 1.52573 * 109.48815 * 295.00385 * 3 2 1 6 6 C 1.47089 * 114.32432 * 155.02274 * 5 3 2 7 7 C 1.54859 * 110.32677 * 62.79823 * 6 5 3 8 8 N 1.44570 * 109.60114 * 288.73553 * 7 6 5 9 9 S 1.65604 * 118.64032 * 270.74756 * 8 7 6 10 10 O 1.42104 * 106.40421 * 17.89281 * 9 8 7 11 11 O 1.42103 * 106.40084 * 150.81082 * 9 8 7 12 12 N 1.65602 * 107.22018 * 264.35248 * 9 8 7 13 13 C 1.46501 * 119.99904 * 275.19360 * 12 9 8 14 14 C 1.46500 * 120.00076 * 95.19241 * 12 9 8 15 15 C 1.50695 * 109.46878 * 95.00220 * 14 12 9 16 16 H 1.08003 * 120.00425 * 0.02562 * 15 14 12 17 17 C 1.37882 * 119.99853 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00094 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99958 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47036 * 90.00007 * 19 17 15 21 21 H 1.48500 * 109.47141 * 210.00495 * 19 17 15 22 22 H 1.48503 * 109.47003 * 330.00238 * 19 17 15 23 23 C 1.47595 * 122.71792 * 90.72184 * 8 7 6 24 24 C 1.50879 * 109.49265 * 175.11711 * 3 2 1 25 25 H 1.09007 * 109.46888 * 59.99727 * 1 2 3 26 26 H 1.08997 * 109.47630 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47102 * 300.00260 * 1 2 3 28 28 H 1.09003 * 109.46828 * 240.00024 * 2 1 3 29 29 H 1.08999 * 109.47430 * 120.00566 * 2 1 3 30 30 H 1.08994 * 108.51373 * 33.76305 * 5 3 2 31 31 H 1.09008 * 108.50840 * 276.27543 * 5 3 2 32 32 H 1.09003 * 109.32694 * 183.06112 * 6 5 3 33 33 H 1.08995 * 109.32919 * 302.53346 * 6 5 3 34 34 H 1.09003 * 109.44961 * 48.77405 * 7 6 5 35 35 H 1.09005 * 109.45231 * 168.71517 * 7 6 5 36 36 H 1.09003 * 109.46727 * 94.79774 * 13 12 9 37 37 H 1.09000 * 109.47068 * 214.79936 * 13 12 9 38 38 H 1.08998 * 109.47033 * 334.80102 * 13 12 9 39 39 H 1.08999 * 109.46946 * 215.00151 * 14 12 9 40 40 H 1.09002 * 109.47109 * 335.00291 * 14 12 9 41 41 H 0.96995 * 120.00097 * 179.97438 * 18 17 15 42 42 H 1.09005 * 108.94795 * 78.55681 * 23 8 7 43 43 H 1.08999 * 108.95066 * 197.18376 * 23 8 7 44 44 H 1.08998 * 109.36435 * 91.66133 * 24 3 2 45 45 H 1.08994 * 109.25992 * 331.97728 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9818 0.8422 5 6 1.6366 2.1250 -1.3035 6 6 1.5362 3.5898 -1.2146 7 6 2.9159 4.2037 -0.8715 8 7 3.2537 3.9008 0.5011 9 16 2.7705 4.9502 1.6877 10 8 1.7426 5.7510 1.1209 11 8 2.5905 4.1718 2.8628 12 7 4.0421 5.9669 1.9905 13 6 5.0956 5.5640 2.9254 14 6 4.1135 7.2693 1.3234 15 6 3.5218 8.3260 2.2202 16 1 3.1319 8.0548 3.1902 17 6 3.4781 9.6393 1.8023 18 7 2.9622 10.5616 2.5851 19 14 4.1531 10.1087 0.1250 20 1 3.0724 10.0100 -0.8887 21 1 4.6646 11.5021 0.1695 22 1 5.2590 9.1869 -0.2391 23 6 4.0109 2.6947 0.8888 24 6 3.5440 1.4447 0.1211 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.6700 1.7302 -1.6162 31 1 2.3725 1.8743 -2.0676 32 1 1.1923 3.9865 -2.1698 33 1 0.8197 3.8558 -0.4375 34 1 3.6742 3.7846 -1.5329 35 1 2.8754 5.2848 -1.0049 36 1 5.9201 5.1147 2.3719 37 1 5.4553 6.4391 3.4665 38 1 4.6951 4.8383 3.6333 39 1 5.1548 7.5130 1.1128 40 1 3.5533 7.2303 0.3892 41 1 2.9318 11.4855 2.2913 42 1 5.0689 2.8603 0.6852 43 1 3.8805 2.5230 1.9573 44 1 3.9867 1.4458 -0.8749 45 1 3.8628 0.5510 0.6574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117366499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:25 Heat of formation + Delta-G solvation = -109.437798 kcal Electronic energy + Delta-G solvation = -25184.031033 eV Core-core repulsion = 21747.921394 eV Total energy + Delta-G solvation = -3436.109640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12182 -38.41490 -37.30391 -36.85999 -36.13518 -34.52961 -33.70710 -31.69953 -30.29766 -26.93927 -26.76913 -26.62968 -23.82410 -23.02789 -22.15955 -20.81386 -19.72138 -19.21956 -18.52654 -18.33176 -17.53783 -16.71939 -16.10898 -16.00036 -15.75637 -15.46961 -15.09936 -14.65267 -14.53385 -14.35133 -14.29840 -14.14458 -13.90887 -13.60493 -13.45095 -13.31741 -13.18132 -13.14099 -13.00301 -12.57017 -12.48454 -12.38015 -12.29099 -12.13135 -12.01190 -11.86936 -11.72731 -11.54861 -11.39608 -11.17070 -11.03567 -10.80081 -9.94714 -9.74893 -8.31005 -6.37790 -0.39865 1.35903 1.40749 1.49126 2.03386 2.34667 2.52517 3.02908 3.34906 3.61222 3.86534 3.92647 3.99804 4.11473 4.14755 4.19962 4.41492 4.46766 4.56408 4.63193 4.66479 4.69608 4.72995 4.80656 4.82709 4.86558 4.92049 5.02323 5.03737 5.11256 5.17674 5.21598 5.26565 5.29856 5.34653 5.39024 5.41472 5.46977 5.59278 5.63253 5.67592 5.92592 6.28478 6.64815 7.25648 8.86793 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.004619 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.401417 B = 6060.787411 C = 6370.063960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.113 4.113 3 C -0.093 4.093 4 H 0.036 0.964 5 C -0.111 4.111 6 C -0.142 4.142 7 C 0.120 3.880 8 N -0.989 5.989 9 S 2.782 3.218 10 O -1.006 7.006 11 O -1.014 7.014 12 N -1.002 6.002 13 C 0.087 3.913 14 C 0.236 3.764 15 C -0.549 4.549 16 H 0.023 0.977 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.947 3.053 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.227 1.227 23 C 0.106 3.894 24 C -0.113 4.113 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.032 0.968 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.268 0.732 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.189 -22.629 -11.807 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.150 4.150 3 C -0.112 4.112 4 H 0.054 0.946 5 C -0.149 4.149 6 C -0.181 4.181 7 C -0.006 4.006 8 N -0.831 5.831 9 S 2.792 3.208 10 O -0.989 6.989 11 O -0.998 6.998 12 N -0.843 5.843 13 C -0.058 4.058 14 C 0.112 3.888 15 C -0.588 4.588 16 H 0.042 0.958 17 C -0.191 4.191 18 N -0.589 5.589 19 Si 0.768 3.232 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.149 1.149 23 C -0.018 4.018 24 C -0.152 4.152 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.348 -22.452 -11.355 25.533 hybrid contribution -0.184 1.160 0.131 1.182 sum 4.164 -21.292 -11.225 24.427 Atomic orbital electron populations 1.21897 0.96603 1.01827 1.01357 1.21599 0.95465 0.95218 1.02736 1.20749 0.96386 0.96396 0.97642 0.94578 1.20555 1.02892 0.93826 0.97577 1.21316 0.97036 0.97626 1.02118 1.21424 0.97498 0.99912 0.81760 1.57430 1.71418 1.34896 1.19337 1.01739 0.73448 0.72388 0.73241 1.93549 1.56087 1.69914 1.79398 1.93472 1.85828 1.71533 1.48962 1.57420 1.41910 1.28564 1.56403 1.21604 0.90487 1.01006 0.92727 1.19188 0.98141 0.79652 0.91859 1.21729 1.40395 0.93407 1.03280 0.95841 1.25988 0.94927 0.95991 1.02229 1.70076 1.46881 1.02307 1.39639 0.85744 0.80292 0.78709 0.78480 1.19278 1.20301 1.14927 1.22008 0.95929 0.84003 0.99889 1.21775 0.94904 0.96481 1.02067 0.92254 0.91740 0.94519 0.90172 0.91703 0.91574 0.89892 0.89303 0.94947 0.86693 0.91913 0.89630 0.91758 0.91030 0.92596 0.94750 0.92267 0.89221 0.90801 0.89258 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.71 71.98 0.70 -1.94 16 2 C -0.11 -1.70 5.23 30.59 0.16 -1.54 16 3 C -0.09 -1.76 1.80 -11.62 -0.02 -1.78 16 4 H 0.04 0.96 7.48 -2.39 -0.02 0.94 16 5 C -0.11 -1.98 4.57 28.61 0.13 -1.85 16 6 C -0.14 -3.32 5.71 29.39 0.17 -3.16 16 7 C 0.12 2.89 5.24 87.37 0.46 3.35 16 8 N -0.99 -27.38 2.59 -512.42 -1.33 -28.71 16 9 S 2.78 112.31 5.96 -56.49 -0.34 111.97 16 10 O -1.01 -49.25 15.25 -128.00 -1.95 -51.20 16 11 O -1.01 -43.96 15.32 -128.00 -1.96 -45.92 16 12 N -1.00 -40.99 3.23 -543.23 -1.75 -42.75 16 13 C 0.09 2.86 10.72 127.77 1.37 4.23 16 14 C 0.24 11.09 4.19 85.63 0.36 11.45 16 15 C -0.55 -32.75 9.94 25.60 0.25 -32.49 16 16 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 17 C 0.01 0.38 5.47 84.66 0.46 0.84 16 18 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 19 Si 0.95 43.00 27.47 68.60 1.88 44.88 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16 23 C 0.11 2.15 6.23 86.49 0.54 2.69 16 24 C -0.11 -1.70 5.24 30.22 0.16 -1.54 16 25 H 0.06 0.95 6.20 -2.38 -0.01 0.93 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.94 7.98 -2.39 -0.02 0.92 16 30 H 0.07 1.11 5.77 -2.39 -0.01 1.10 16 31 H 0.08 1.08 7.36 -2.38 -0.02 1.06 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.03 0.98 7.73 -2.39 -0.02 0.96 16 34 H 0.12 1.88 8.07 -2.39 -0.02 1.86 16 35 H 0.06 1.76 7.52 -2.38 -0.02 1.75 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 38 H 0.07 2.27 6.99 -2.39 -0.02 2.26 16 39 H 0.06 2.36 7.17 -2.39 -0.02 2.35 16 40 H 0.03 1.59 6.89 -2.39 -0.02 1.58 16 41 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 42 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.07 1.73 6.78 -2.39 -0.02 1.71 16 44 H 0.09 0.98 7.32 -2.39 -0.02 0.96 16 45 H 0.09 1.08 7.65 -2.39 -0.02 1.06 16 Total: -1.00 -79.61 352.81 0.49 -79.13 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.89 Total: 15.00 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.74 Total: -21.74 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -2.78 Total: -132.12 kcal Atomic # 8 Polarization: -93.21 SS G_CDS: -3.91 Total: -97.12 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.88 kcal Atomic # 16 Polarization: 112.31 SS G_CDS: -0.34 Total: 111.97 kcal Total: -79.61 0.49 -79.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117366499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.311 kcal (2) G-P(sol) polarization free energy of solvation -79.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds