Wall clock time and date at job start Tue Mar 31 2020 08:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47740 * 120.00502 * 2 1 3 5 5 H 1.09006 * 109.69875 * 60.36724 * 4 2 1 6 6 C 1.52767 * 109.50485 * 300.25790 * 4 2 1 7 7 C 1.53046 * 109.38158 * 185.70132 * 6 4 2 8 8 C 1.53039 * 109.53396 * 61.23895 * 7 6 4 9 9 C 1.53185 * 109.31720 * 298.63316 * 8 7 6 10 10 N 1.46918 * 109.59216 * 180.72813 * 4 2 1 11 11 S 1.65606 * 120.62962 * 353.41993 * 10 4 2 12 12 O 1.42098 * 106.39942 * 341.10285 * 11 10 4 13 13 O 1.42098 * 106.40080 * 114.02174 * 11 10 4 14 14 N 1.65601 * 107.21406 * 227.56196 * 11 10 4 15 15 C 1.46494 * 120.00136 * 272.20899 * 14 11 10 16 16 C 1.46500 * 119.99545 * 92.21575 * 14 11 10 17 17 C 1.50703 * 109.47434 * 93.59261 * 16 14 11 18 18 H 1.08000 * 119.99968 * 359.97438 * 17 16 14 19 19 C 1.37874 * 120.00508 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00491 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99675 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47080 * 89.99856 * 21 19 17 23 23 H 1.48497 * 109.47193 * 209.99822 * 21 19 17 24 24 H 1.48501 * 109.47368 * 330.00103 * 21 19 17 25 25 H 1.09008 * 109.47039 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47008 * 299.99097 * 1 2 3 27 27 H 1.08999 * 109.47172 * 59.99640 * 1 2 3 28 28 H 1.09002 * 109.47420 * 240.00309 * 2 1 3 29 29 H 1.09003 * 109.47406 * 176.52008 * 3 2 1 30 30 H 1.08996 * 109.47324 * 296.52907 * 3 2 1 31 31 H 1.09006 * 109.46839 * 56.52886 * 3 2 1 32 32 H 1.08997 * 109.56317 * 65.66933 * 6 4 2 33 33 H 1.08996 * 109.36233 * 305.61160 * 6 4 2 34 34 H 1.09006 * 109.45697 * 301.21914 * 7 6 4 35 35 H 1.08996 * 109.46011 * 181.26204 * 7 6 4 36 36 H 1.09000 * 109.49414 * 178.68211 * 8 7 6 37 37 H 1.09000 * 109.52230 * 58.60607 * 8 7 6 38 38 H 1.09007 * 109.58810 * 294.85504 * 9 8 7 39 39 H 1.08997 * 109.59447 * 174.42318 * 9 8 7 40 40 H 1.09000 * 109.47193 * 90.00189 * 15 14 11 41 41 H 1.09005 * 109.47110 * 210.00590 * 15 14 11 42 42 H 1.08999 * 109.47252 * 330.00212 * 15 14 11 43 43 H 1.09004 * 109.46877 * 213.58816 * 16 14 11 44 44 H 1.08994 * 109.47629 * 333.58817 * 16 14 11 45 45 H 0.96994 * 120.00214 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6842 -1.7517 1.2496 6 6 1.5261 -0.0057 2.4971 7 6 2.1514 -0.6414 3.7410 8 6 3.6729 -0.4862 3.6851 9 6 4.2113 -1.2124 2.4484 10 7 3.5092 -0.7076 1.2605 11 16 4.3576 -0.1276 -0.0381 12 8 3.4608 -0.1380 -1.1403 13 8 5.0252 1.0442 0.4097 14 7 5.5389 -1.2349 -0.3858 15 6 6.8394 -1.1531 0.2836 16 6 5.2834 -2.2961 -1.3629 17 6 5.7592 -1.8526 -2.7223 18 1 6.2067 -0.8775 -2.8462 19 6 5.6231 -2.6915 -3.8079 20 7 6.0387 -2.3046 -4.9942 21 14 4.8496 -4.3783 -3.5936 22 1 3.3822 -4.2798 -3.8001 23 1 5.4274 -5.3178 -4.5879 24 1 5.1241 -4.8782 -2.2225 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1282 1.4432 0.0624 30 1 1.7284 1.9381 -0.9194 31 1 1.6267 1.9740 0.8573 32 1 0.4411 -0.0960 2.5488 33 1 1.8021 1.0477 2.4491 34 1 1.8954 -1.7004 3.7752 35 1 1.7683 -0.1464 4.6333 36 1 4.1158 -0.9184 4.5824 37 1 3.9291 0.5717 3.6262 38 1 4.0361 -2.2836 2.5486 39 1 5.2800 -1.0225 2.3494 40 1 6.8134 -1.7408 1.2012 41 1 7.6133 -1.5446 -0.3769 42 1 7.0594 -0.1130 0.5244 43 1 5.8185 -3.1986 -1.0673 44 1 4.2142 -2.5041 -1.4022 45 1 5.9427 -2.8947 -5.7580 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117371032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:22 Heat of formation + Delta-G solvation = -68.320369 kcal Electronic energy + Delta-G solvation = -26015.934601 eV Core-core repulsion = 22581.607947 eV Total energy + Delta-G solvation = -3434.326654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.43915 -38.45103 -37.48562 -37.22292 -35.44886 -34.52703 -33.35148 -30.69383 -30.28476 -28.32772 -26.83287 -25.33822 -24.81654 -23.78721 -21.67237 -21.17450 -19.76823 -19.10937 -18.67566 -17.80998 -17.25879 -16.49665 -16.41462 -16.00093 -15.55336 -15.45129 -15.34513 -14.91195 -14.69204 -14.59556 -14.46044 -13.95625 -13.76344 -13.60966 -13.39831 -13.21697 -13.10220 -12.97986 -12.91073 -12.82128 -12.50308 -12.34458 -12.22972 -11.99331 -11.88046 -11.85399 -11.74132 -11.72588 -11.33548 -11.27908 -10.79715 -10.48036 -9.87837 -9.79181 -8.30304 -6.36700 -0.36184 1.35812 1.40128 1.48636 2.02775 2.34487 2.51718 3.03593 3.48389 3.52481 3.79791 3.88975 3.98868 4.03350 4.14534 4.23399 4.32486 4.41017 4.49522 4.56002 4.61114 4.67457 4.71151 4.77239 4.83262 4.86482 4.88603 4.95952 4.98085 5.01115 5.08269 5.15744 5.26159 5.27562 5.30730 5.35919 5.43186 5.46792 5.55957 5.66343 5.80658 5.86391 6.29083 6.65543 7.26392 8.87569 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.006072 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.310871 B = 4610.499525 C = 5025.832866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.159 4.159 3 C -0.144 4.144 4 C 0.161 3.839 5 H 0.090 0.910 6 C -0.130 4.130 7 C -0.112 4.112 8 C -0.131 4.131 9 C 0.112 3.888 10 N -1.004 6.004 11 S 2.791 3.209 12 O -0.989 6.989 13 O -1.024 7.024 14 N -1.006 6.006 15 C 0.081 3.919 16 C 0.239 3.761 17 C -0.544 4.544 18 H 0.022 0.978 19 C 0.008 3.992 20 N -0.949 5.949 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.229 1.229 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.120 0.880 29 H -0.005 1.005 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.035 0.965 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 -1.395 21.471 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.179 4.179 3 C -0.201 4.201 4 C 0.056 3.944 5 H 0.108 0.892 6 C -0.169 4.169 7 C -0.150 4.150 8 C -0.170 4.170 9 C -0.012 4.012 10 N -0.847 5.847 11 S 2.805 3.195 12 O -0.973 6.973 13 O -1.007 7.007 14 N -0.846 5.846 15 C -0.064 4.064 16 C 0.115 3.885 17 C -0.583 4.583 18 H 0.040 0.960 19 C -0.190 4.190 20 N -0.589 5.589 21 Si 0.767 3.233 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.151 1.151 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.014 0.986 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.271 -0.639 20.831 23.234 hybrid contribution 0.475 -0.312 -0.908 1.071 sum -9.796 -0.951 19.923 22.221 Atomic orbital electron populations 1.21768 0.91906 1.02858 1.02548 1.22557 0.98882 0.96205 1.00252 1.22230 0.96779 0.98372 1.02740 1.21154 0.76985 1.00581 0.95672 0.89244 1.22015 1.01605 0.99709 0.93566 1.21479 0.94223 1.01870 0.97421 1.21904 0.97303 1.00483 0.97355 1.21696 0.95394 0.99684 0.84458 1.58041 1.15268 1.80779 1.30580 1.02002 0.71467 0.72421 0.73639 1.93558 1.61334 1.87104 1.55340 1.93480 1.76469 1.47451 1.83344 1.57336 1.26340 1.47785 1.53099 1.21695 0.84708 1.02317 0.97728 1.19172 0.96556 0.87165 0.85644 1.21674 1.40520 1.02213 0.93880 0.95955 1.25947 0.95354 1.03437 0.94255 1.70075 1.48809 1.39194 1.00853 0.85763 0.79073 0.78102 0.80393 1.19206 1.20390 1.15117 0.91192 0.90639 0.92843 0.86307 0.98616 0.92289 0.90364 0.88337 0.92406 0.90505 0.90188 0.88426 0.93000 0.89271 0.90853 0.89539 0.90993 0.91643 0.92687 0.94668 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.84 71.98 0.64 -2.21 16 2 C -0.16 -4.71 2.15 -10.79 -0.02 -4.73 16 3 C -0.14 -4.74 7.46 71.98 0.54 -4.20 16 4 C 0.16 4.00 2.72 44.84 0.12 4.12 16 5 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 6 C -0.13 -2.38 4.62 30.53 0.14 -2.23 16 7 C -0.11 -1.62 5.89 30.62 0.18 -1.44 16 8 C -0.13 -2.24 6.08 30.67 0.19 -2.06 16 9 C 0.11 2.43 6.46 86.36 0.56 2.99 16 10 N -1.00 -29.32 3.25 -491.51 -1.60 -30.92 16 11 S 2.79 114.12 3.74 -56.49 -0.21 113.91 16 12 O -0.99 -46.52 10.75 -128.00 -1.38 -47.89 16 13 O -1.02 -46.09 15.49 -128.00 -1.98 -48.07 16 14 N -1.01 -41.60 3.10 -543.24 -1.68 -43.28 16 15 C 0.08 2.72 9.82 127.77 1.26 3.98 16 16 C 0.24 11.19 4.13 85.63 0.35 11.54 16 17 C -0.54 -32.23 9.94 25.60 0.25 -31.97 16 18 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 19 C 0.01 0.46 5.47 84.65 0.46 0.92 16 20 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 21 Si 0.95 42.86 27.47 68.60 1.88 44.74 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.23 -8.96 6.54 99.48 0.65 -8.31 16 25 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.07 1.24 6.56 -2.39 -0.02 1.22 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.12 4.53 5.12 -64.26 -0.33 4.21 16 29 H 0.00 -0.19 3.20 -19.84 -0.06 -0.25 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 2.07 6.50 -2.38 -0.02 2.06 16 32 H 0.10 1.33 6.75 -2.39 -0.02 1.32 16 33 H 0.06 1.22 6.22 -2.39 -0.01 1.20 16 34 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.07 1.60 5.95 -2.39 -0.01 1.59 16 40 H 0.09 2.09 7.18 -2.39 -0.02 2.08 16 41 H 0.07 2.53 8.07 -2.38 -0.02 2.51 16 42 H 0.06 2.22 7.04 -2.39 -0.02 2.20 16 43 H 0.06 2.33 7.15 -2.38 -0.02 2.31 16 44 H 0.04 1.62 7.03 -2.39 -0.02 1.60 16 45 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -78.41 338.50 0.54 -77.87 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.54 Total: 19.41 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 4.66 Total: -25.29 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -2.98 Total: -134.66 kcal Atomic # 8 Polarization: -92.61 SS G_CDS: -3.36 Total: -95.97 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 16 Polarization: 114.12 SS G_CDS: -0.21 Total: 113.91 kcal Total: -78.41 0.54 -77.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117371032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.548 kcal (2) G-P(sol) polarization free energy of solvation -78.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds