Wall clock time and date at job start Tue Mar 31 2020 08:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 C 1.52997 * 109.46851 * 119.99732 * 2 1 3 5 5 H 1.08999 * 109.70425 * 181.46880 * 4 2 1 6 6 C 1.53195 * 109.58787 * 301.82940 * 4 2 1 7 7 C 1.53046 * 109.31115 * 174.42233 * 6 4 2 8 8 C 1.53032 * 109.53944 * 298.63031 * 7 6 4 9 9 C 1.52769 * 109.38086 * 61.24137 * 8 7 6 10 10 N 1.46920 * 109.00882 * 305.58792 * 9 8 7 11 11 S 1.65606 * 120.63052 * 233.58419 * 10 9 8 12 12 O 1.42101 * 106.40161 * 192.02918 * 11 10 9 13 13 O 1.42097 * 106.39968 * 59.10631 * 11 10 9 14 14 N 1.65603 * 107.21446 * 305.56849 * 11 10 9 15 15 C 1.46500 * 119.99765 * 265.09185 * 14 11 10 16 16 C 1.46499 * 119.99842 * 85.09768 * 14 11 10 17 17 C 1.50701 * 109.47258 * 94.99804 * 16 14 11 18 18 H 1.08001 * 119.99532 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99897 * 179.97438 * 17 16 14 20 20 N 1.31508 * 120.00218 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99895 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46767 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46699 * 120.00037 * 21 19 17 24 24 H 1.48491 * 109.47368 * 240.00143 * 21 19 17 25 25 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46987 * 300.00046 * 1 2 3 27 27 H 1.08998 * 109.46457 * 60.00052 * 1 2 3 28 28 H 1.09000 * 109.47276 * 239.99627 * 2 1 3 29 29 H 1.08998 * 109.47543 * 184.96857 * 3 2 1 30 30 H 1.09001 * 109.46847 * 304.96806 * 3 2 1 31 31 H 1.08995 * 109.47449 * 64.96596 * 3 2 1 32 32 H 1.09005 * 109.49471 * 294.37040 * 6 4 2 33 33 H 1.08993 * 109.49901 * 54.46995 * 6 4 2 34 34 H 1.09005 * 109.46057 * 58.65835 * 7 6 4 35 35 H 1.09001 * 109.45202 * 178.62552 * 7 6 4 36 36 H 1.08999 * 109.49673 * 181.31442 * 8 7 6 37 37 H 1.08998 * 109.50060 * 301.42072 * 8 7 6 38 38 H 1.08996 * 109.50619 * 185.70426 * 9 8 7 39 39 H 1.08999 * 109.43217 * 65.42493 * 9 8 7 40 40 H 1.08996 * 109.47508 * 275.00753 * 15 14 11 41 41 H 1.08995 * 109.47034 * 35.00926 * 15 14 11 42 42 H 1.09001 * 109.47079 * 155.00655 * 15 14 11 43 43 H 1.08997 * 109.47345 * 334.99145 * 16 14 11 44 44 H 1.09008 * 109.46927 * 214.99472 * 16 14 11 45 45 H 0.97007 * 120.00304 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1297 -0.7007 1.2664 6 6 1.4935 -0.0281 2.5014 7 6 1.8916 -0.8338 3.7403 8 6 1.2805 -2.2344 3.6580 9 6 1.8196 -2.9509 2.4211 10 7 1.5738 -2.1145 1.2385 11 16 0.7802 -2.7285 -0.0790 12 8 0.9551 -1.7859 -1.1279 13 8 -0.4959 -3.1505 0.3820 14 7 1.5867 -4.0987 -0.5422 15 6 2.6064 -4.0289 -1.5918 16 6 1.2803 -5.3805 0.0974 17 6 0.2693 -6.1277 -0.7337 18 1 -0.1076 -5.6911 -1.6468 19 6 -0.1744 -7.3686 -0.3283 20 7 0.2841 -7.8999 0.7838 21 14 -1.4282 -8.2945 -1.3582 22 1 -1.7820 -7.4857 -2.5522 23 1 -0.8505 -9.5916 -1.7929 24 1 -2.6479 -8.5423 -0.5484 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 3.1264 1.4438 -0.0890 30 1 1.6059 1.9813 -0.8422 31 1 1.7513 1.9300 0.9311 32 1 1.9097 0.9769 2.5718 33 1 0.4070 0.0310 2.4396 34 1 2.9776 -0.9136 3.7881 35 1 1.5247 -0.3297 4.6344 36 1 1.5450 -2.7998 4.5516 37 1 0.1959 -2.1545 3.5852 38 1 1.3109 -3.9077 2.3042 39 1 2.8909 -3.1159 2.5358 40 1 2.1286 -4.1057 -2.5684 41 1 3.1368 -3.0794 -1.5204 42 1 3.3126 -4.8498 -1.4673 43 1 0.8721 -5.2019 1.0922 44 1 2.1918 -5.9726 0.1796 45 1 -0.0283 -8.7728 1.0692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117371034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:26 Heat of formation + Delta-G solvation = -42.417492 kcal Electronic energy + Delta-G solvation = -25913.958017 eV Core-core repulsion = 22480.754596 eV Total energy + Delta-G solvation = -3433.203421 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.35122 -37.06186 -35.61071 -35.42828 -34.21921 -32.43783 -32.25630 -29.62236 -27.79014 -27.18106 -25.07656 -24.23791 -23.76548 -22.27895 -20.65175 -19.98188 -18.35399 -17.03584 -16.69198 -16.14629 -15.67363 -15.33325 -14.86851 -14.56106 -14.46598 -14.22644 -13.68024 -13.53983 -13.39059 -13.22357 -12.93203 -12.64664 -12.27418 -12.11036 -11.99527 -11.81118 -11.52735 -11.44164 -11.36562 -11.18425 -11.03302 -10.83973 -10.76515 -10.69191 -10.66160 -10.52002 -10.28554 -10.14675 -9.96316 -9.74342 -9.17880 -8.67663 -8.44529 -8.04819 -6.07514 -4.10860 1.24599 3.30980 3.38530 3.44099 3.51928 4.01926 4.44486 4.63363 4.85405 4.91955 5.04501 5.10206 5.19663 5.25813 5.28803 5.38518 5.44224 5.51492 5.61942 5.73724 5.76859 5.80120 5.82962 5.91821 5.93809 6.02393 6.04819 6.07415 6.12308 6.17093 6.23205 6.29332 6.36911 6.46129 6.49988 6.56875 6.92540 6.96898 7.17896 7.37899 7.59870 7.90550 8.19279 8.91585 9.54385 11.01167 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.005409 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.015077 B = 5175.729589 C = 5741.394313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C -0.142 4.142 4 C 0.165 3.835 5 H 0.069 0.931 6 C -0.134 4.134 7 C -0.115 4.115 8 C -0.134 4.134 9 C 0.122 3.878 10 N -1.009 6.009 11 S 2.781 3.219 12 O -0.988 6.988 13 O -0.967 6.967 14 N -1.002 6.002 15 C 0.111 3.889 16 C 0.254 3.746 17 C -0.526 4.526 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.025 0.975 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.154 0.846 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.150 15.332 3.652 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C -0.200 4.200 4 C 0.058 3.942 5 H 0.087 0.913 6 C -0.172 4.172 7 C -0.152 4.152 8 C -0.173 4.173 9 C -0.003 4.003 10 N -0.848 5.848 11 S 2.794 3.206 12 O -0.972 6.972 13 O -0.950 6.950 14 N -0.844 5.844 15 C -0.035 4.035 16 C 0.132 3.868 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.536 5.536 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.207 1.207 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.170 0.830 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.357 15.454 3.342 17.042 hybrid contribution -0.408 -0.883 -0.171 0.988 sum 5.949 14.571 3.171 16.055 Atomic orbital electron populations 1.22091 0.95368 0.99758 1.01326 1.22681 0.96672 0.96918 1.00342 1.21856 1.00615 0.95990 1.01545 1.20998 0.98068 0.79833 0.95287 0.91278 1.22079 1.02074 0.98586 0.94504 1.21463 1.00464 0.95799 0.97517 1.21804 1.01497 0.96192 0.97762 1.21333 1.00723 0.93466 0.84784 1.58351 1.76731 1.18743 1.30946 1.02407 0.73639 0.71063 0.73537 1.93525 1.86392 1.58794 1.58490 1.93619 1.37811 1.81979 1.81573 1.57643 1.53990 1.24120 1.48639 1.21180 0.90836 1.00832 0.90701 1.19153 0.96658 0.78487 0.92535 1.21512 1.24047 1.02214 1.08731 0.92155 1.24926 0.96553 0.97328 0.95235 1.69917 1.43936 1.17591 1.22171 0.86458 0.81252 0.79439 0.80433 1.19629 1.20922 1.20748 0.95677 0.93471 0.91726 0.82982 0.92850 0.92483 0.93010 0.91069 0.91052 0.92093 0.92148 0.91003 0.91208 0.89337 0.91808 0.93318 0.93030 0.91353 0.94714 0.94699 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.45 37.16 0.28 -1.71 16 2 C -0.15 -2.02 2.15 -90.62 -0.19 -2.22 16 3 C -0.14 -1.50 9.01 37.16 0.33 -1.16 16 4 C 0.16 2.19 2.72 -67.60 -0.18 2.00 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.13 -1.53 4.66 -26.61 -0.12 -1.66 16 7 C -0.11 -1.24 5.88 -26.69 -0.16 -1.39 16 8 C -0.13 -1.72 6.06 -26.83 -0.16 -1.88 16 9 C 0.12 1.85 6.50 -3.93 -0.03 1.83 16 10 N -1.01 -16.28 3.25 -106.72 -0.35 -16.63 16 11 S 2.78 56.42 3.74 -107.50 -0.40 56.02 16 12 O -0.99 -19.20 10.10 -57.17 -0.58 -19.77 16 13 O -0.97 -24.00 16.48 -57.17 -0.94 -24.94 16 14 N -1.00 -21.17 3.21 -123.05 -0.40 -21.57 16 15 C 0.11 1.94 10.27 59.85 0.61 2.56 16 16 C 0.25 6.36 4.94 -5.19 -0.03 6.33 16 17 C -0.53 -14.94 9.38 -34.44 -0.32 -15.26 16 18 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 21 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H 0.02 0.46 3.70 -26.94 -0.10 0.36 16 26 H 0.05 0.64 6.28 -51.93 -0.33 0.31 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.15 2.39 5.14 -56.60 -0.29 2.10 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.48 6.37 -51.93 -0.33 0.15 16 32 H 0.07 0.67 6.68 -51.93 -0.35 0.32 16 33 H 0.07 0.90 6.12 -51.93 -0.32 0.58 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.57 5.64 -51.93 -0.29 1.27 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.75 7.85 -51.93 -0.41 0.34 16 42 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 43 H 0.04 0.91 5.69 -51.93 -0.30 0.62 16 44 H 0.04 0.88 7.94 -51.92 -0.41 0.47 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -32.13 342.26 -9.16 -41.29 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.30 Total: -0.32 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.07 Total: -10.91 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.01 Total: -63.52 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.52 Total: -44.71 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 56.42 SS G_CDS: -0.40 Total: 56.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.13 -9.16 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117371034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.124 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds