Wall clock time and date at job start Tue Mar 31 2020 08:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 C 1.52997 * 109.46851 * 119.99732 * 2 1 3 5 5 H 1.08999 * 109.70425 * 181.46880 * 4 2 1 6 6 C 1.53195 * 109.58787 * 301.82940 * 4 2 1 7 7 C 1.53046 * 109.31115 * 174.42233 * 6 4 2 8 8 C 1.53032 * 109.53944 * 298.63031 * 7 6 4 9 9 C 1.52769 * 109.38086 * 61.24137 * 8 7 6 10 10 N 1.46920 * 109.00882 * 305.58792 * 9 8 7 11 11 S 1.65606 * 120.63052 * 233.58419 * 10 9 8 12 12 O 1.42101 * 106.40161 * 192.02918 * 11 10 9 13 13 O 1.42097 * 106.39968 * 59.10631 * 11 10 9 14 14 N 1.65603 * 107.21446 * 305.56849 * 11 10 9 15 15 C 1.46500 * 119.99765 * 265.09185 * 14 11 10 16 16 C 1.46499 * 119.99842 * 85.09768 * 14 11 10 17 17 C 1.50701 * 109.47258 * 94.99804 * 16 14 11 18 18 H 1.08001 * 119.99532 * 359.97438 * 17 16 14 19 19 C 1.37874 * 119.99897 * 179.97438 * 17 16 14 20 20 N 1.31508 * 120.00218 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99895 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46767 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46699 * 120.00037 * 21 19 17 24 24 H 1.48491 * 109.47368 * 240.00143 * 21 19 17 25 25 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46987 * 300.00046 * 1 2 3 27 27 H 1.08998 * 109.46457 * 60.00052 * 1 2 3 28 28 H 1.09000 * 109.47276 * 239.99627 * 2 1 3 29 29 H 1.08998 * 109.47543 * 184.96857 * 3 2 1 30 30 H 1.09001 * 109.46847 * 304.96806 * 3 2 1 31 31 H 1.08995 * 109.47449 * 64.96596 * 3 2 1 32 32 H 1.09005 * 109.49471 * 294.37040 * 6 4 2 33 33 H 1.08993 * 109.49901 * 54.46995 * 6 4 2 34 34 H 1.09005 * 109.46057 * 58.65835 * 7 6 4 35 35 H 1.09001 * 109.45202 * 178.62552 * 7 6 4 36 36 H 1.08999 * 109.49673 * 181.31442 * 8 7 6 37 37 H 1.08998 * 109.50060 * 301.42072 * 8 7 6 38 38 H 1.08996 * 109.50619 * 185.70426 * 9 8 7 39 39 H 1.08999 * 109.43217 * 65.42493 * 9 8 7 40 40 H 1.08996 * 109.47508 * 275.00753 * 15 14 11 41 41 H 1.08995 * 109.47034 * 35.00926 * 15 14 11 42 42 H 1.09001 * 109.47079 * 155.00655 * 15 14 11 43 43 H 1.08997 * 109.47345 * 334.99145 * 16 14 11 44 44 H 1.09008 * 109.46927 * 214.99472 * 16 14 11 45 45 H 0.97007 * 120.00304 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1297 -0.7007 1.2664 6 6 1.4935 -0.0281 2.5014 7 6 1.8916 -0.8338 3.7403 8 6 1.2805 -2.2344 3.6580 9 6 1.8196 -2.9509 2.4211 10 7 1.5738 -2.1145 1.2385 11 16 0.7802 -2.7285 -0.0790 12 8 0.9551 -1.7859 -1.1279 13 8 -0.4959 -3.1505 0.3820 14 7 1.5867 -4.0987 -0.5422 15 6 2.6064 -4.0289 -1.5918 16 6 1.2803 -5.3805 0.0974 17 6 0.2693 -6.1277 -0.7337 18 1 -0.1076 -5.6911 -1.6468 19 6 -0.1744 -7.3686 -0.3283 20 7 0.2841 -7.8999 0.7838 21 14 -1.4282 -8.2945 -1.3582 22 1 -1.7820 -7.4857 -2.5522 23 1 -0.8505 -9.5916 -1.7929 24 1 -2.6479 -8.5423 -0.5484 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 3.1264 1.4438 -0.0890 30 1 1.6059 1.9813 -0.8422 31 1 1.7513 1.9300 0.9311 32 1 1.9097 0.9769 2.5718 33 1 0.4070 0.0310 2.4396 34 1 2.9776 -0.9136 3.7881 35 1 1.5247 -0.3297 4.6344 36 1 1.5450 -2.7998 4.5516 37 1 0.1959 -2.1545 3.5852 38 1 1.3109 -3.9077 2.3042 39 1 2.8909 -3.1159 2.5358 40 1 2.1286 -4.1057 -2.5684 41 1 3.1368 -3.0794 -1.5204 42 1 3.3126 -4.8498 -1.4673 43 1 0.8721 -5.2019 1.0922 44 1 2.1918 -5.9726 0.1796 45 1 -0.0283 -8.7728 1.0692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117371034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:25 Heat of formation + Delta-G solvation = -64.387897 kcal Electronic energy + Delta-G solvation = -25914.910725 eV Core-core repulsion = 22480.754596 eV Total energy + Delta-G solvation = -3434.156129 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46653 -38.53519 -37.31128 -37.12984 -35.43673 -34.52316 -33.35797 -30.67843 -29.69794 -28.24491 -26.80398 -25.34910 -24.82672 -24.18892 -21.71322 -21.17548 -19.81495 -18.79067 -18.46221 -17.68809 -17.22914 -16.60760 -16.44253 -15.95615 -15.62086 -15.46311 -15.07802 -15.01570 -14.76645 -14.66834 -14.05321 -13.98653 -13.73848 -13.51217 -13.40644 -13.17424 -13.08001 -12.93569 -12.88750 -12.64617 -12.52669 -12.50219 -12.19582 -12.03567 -11.84865 -11.79241 -11.76613 -11.74251 -11.33273 -11.24534 -10.62545 -10.38649 -9.88045 -9.78663 -8.24248 -6.35818 -0.29865 1.34766 1.37359 1.49090 2.05324 2.37004 2.55617 3.05947 3.46868 3.58125 3.84176 3.92772 4.00147 4.06970 4.18039 4.23712 4.34726 4.40436 4.50638 4.62448 4.67840 4.74152 4.80029 4.81824 4.87669 4.90325 4.97371 5.00205 5.02966 5.07538 5.14871 5.16862 5.24950 5.28218 5.38149 5.42025 5.46444 5.54552 5.63613 5.75429 5.81776 5.98274 6.07395 6.71392 7.32784 8.83426 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.005409 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.015077 B = 5175.729589 C = 5741.394313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.146 4.146 3 C -0.136 4.136 4 C 0.157 3.843 5 H 0.097 0.903 6 C -0.132 4.132 7 C -0.109 4.109 8 C -0.134 4.134 9 C 0.117 3.883 10 N -1.001 6.001 11 S 2.788 3.212 12 O -0.985 6.985 13 O -1.024 7.024 14 N -1.011 6.011 15 C 0.103 3.897 16 C 0.268 3.732 17 C -0.550 4.550 18 H 0.046 0.954 19 C 0.014 3.986 20 N -0.922 5.922 21 Si 0.954 3.046 22 H -0.273 1.273 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.012 1.012 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.133 0.867 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.017 0.983 44 H 0.029 0.971 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.852 17.228 4.302 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C -0.193 4.193 4 C 0.052 3.948 5 H 0.114 0.886 6 C -0.171 4.171 7 C -0.147 4.147 8 C -0.173 4.173 9 C -0.008 4.008 10 N -0.843 5.843 11 S 2.802 3.198 12 O -0.969 6.969 13 O -1.008 7.008 14 N -0.851 5.851 15 C -0.042 4.042 16 C 0.145 3.855 17 C -0.589 4.589 18 H 0.064 0.936 19 C -0.186 4.186 20 N -0.561 5.561 21 Si 0.779 3.221 22 H -0.198 1.198 23 H -0.190 1.190 24 H -0.203 1.203 25 H 0.006 0.994 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.149 0.851 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.035 0.965 44 H 0.047 0.953 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.072 17.354 3.967 19.546 hybrid contribution -0.914 -1.377 -0.360 1.692 sum 7.158 15.977 3.607 17.875 Atomic orbital electron populations 1.22184 0.97146 0.97548 1.02329 1.22583 0.95152 0.99306 0.99630 1.21811 1.01694 0.93231 1.02609 1.21381 0.99584 0.77810 0.96040 0.88557 1.22120 1.01187 1.00126 0.93697 1.21465 1.01486 0.93807 0.97896 1.21828 1.00102 0.98159 0.97168 1.21458 1.01893 0.92209 0.85274 1.58026 1.76376 1.20159 1.29751 1.02076 0.72919 0.70689 0.74165 1.93586 1.86315 1.57775 1.59239 1.93538 1.41549 1.83026 1.82642 1.57596 1.54894 1.23025 1.49624 1.21412 0.90369 1.03063 0.89394 1.18732 0.95392 0.79859 0.91547 1.21823 1.25233 1.03084 1.08802 0.93614 1.25718 0.98304 0.98162 0.96411 1.69992 1.44858 1.18102 1.23194 0.85566 0.79009 0.78689 0.78830 1.19763 1.19026 1.20299 0.99356 0.91673 0.91603 0.85070 0.90979 0.92366 0.91248 0.87803 0.92726 0.90116 0.90221 0.89206 0.93653 0.92990 0.89229 0.93940 0.89782 0.90340 0.96514 0.95260 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 7.45 71.99 0.54 -3.60 16 2 C -0.15 -3.76 2.15 -10.79 -0.02 -3.78 16 3 C -0.14 -2.36 9.01 71.98 0.65 -1.71 16 4 C 0.16 3.76 2.72 44.97 0.12 3.88 16 5 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.13 -2.60 4.66 30.68 0.14 -2.45 16 7 C -0.11 -1.96 5.88 30.62 0.18 -1.78 16 8 C -0.13 -3.29 6.06 30.53 0.19 -3.11 16 9 C 0.12 3.51 6.50 86.22 0.56 4.07 16 10 N -1.00 -31.91 3.25 -491.54 -1.60 -33.51 16 11 S 2.79 116.85 3.74 -56.49 -0.21 116.64 16 12 O -0.98 -38.91 10.10 -128.00 -1.29 -40.20 16 13 O -1.02 -54.10 16.48 -128.00 -2.11 -56.21 16 14 N -1.01 -43.98 3.21 -543.23 -1.74 -45.72 16 15 C 0.10 3.59 10.27 127.77 1.31 4.90 16 16 C 0.27 14.03 4.94 85.63 0.42 14.46 16 17 C -0.55 -32.41 9.38 25.60 0.24 -32.17 16 18 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 19 C 0.01 0.80 5.46 84.65 0.46 1.26 16 20 N -0.92 -54.61 13.29 21.45 0.28 -54.33 16 21 Si 0.95 45.75 29.54 68.60 2.03 47.77 16 22 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.01 -0.48 3.70 -18.28 -0.07 -0.55 16 26 H 0.06 1.71 6.28 -2.39 -0.02 1.69 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.13 3.97 5.14 -76.32 -0.39 3.58 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.98 6.37 -2.39 -0.02 0.96 16 32 H 0.10 1.41 6.68 -2.38 -0.02 1.40 16 33 H 0.05 1.27 6.12 -2.39 -0.01 1.25 16 34 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.95 5.64 -2.39 -0.01 1.93 16 39 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 2.34 7.85 -2.39 -0.02 2.33 16 42 H 0.08 2.54 7.89 -2.39 -0.02 2.52 16 43 H 0.02 0.94 5.69 -2.39 -0.01 0.93 16 44 H 0.03 1.54 7.94 -2.38 -0.02 1.52 16 45 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -72.86 342.26 0.67 -72.18 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.53 Total: 13.41 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.79 Total: -20.04 kcal Atomic # 7 Polarization: -130.50 SS G_CDS: -3.06 Total: -133.56 kcal Atomic # 8 Polarization: -93.01 SS G_CDS: -3.40 Total: -96.41 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 116.85 SS G_CDS: -0.21 Total: 116.64 kcal Total: -72.86 0.67 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117371034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.797 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds