Wall clock time and date at job start Tue Mar 31 2020 08:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47573 * 2 1 4 4 C 1.53005 * 109.46978 * 240.00015 * 2 1 3 5 5 C 1.52999 * 109.46898 * 120.00263 * 2 1 3 6 6 N 1.46499 * 109.47185 * 64.96849 * 5 2 1 7 7 C 1.46494 * 120.00084 * 274.19415 * 6 5 2 8 8 C 1.50700 * 109.47123 * 262.83382 * 7 6 5 9 9 H 1.08003 * 120.00325 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00119 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00318 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00150 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47048 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47321 * 120.00228 * 12 10 8 15 15 H 1.48502 * 109.47593 * 240.00139 * 12 10 8 16 16 C 1.34783 * 120.00233 * 94.19086 * 6 5 2 17 17 O 1.21730 * 119.99712 * 1.03061 * 16 6 5 18 18 C 1.46488 * 120.00081 * 181.30125 * 16 6 5 19 19 C 1.37784 * 125.85799 * 169.54501 * 18 16 6 20 20 C 1.39928 * 107.68605 * 179.97438 * 19 18 16 21 21 O 1.35124 * 145.13771 * 180.02562 * 20 19 18 22 22 C 1.34377 * 109.62516 * 180.02562 * 21 20 19 23 23 C 1.34468 * 109.44479 * 359.97438 * 22 21 20 24 24 C 1.39129 * 107.40821 * 0.02562 * 20 19 18 25 25 N 1.37114 * 108.10674 * 359.75824 * 24 20 19 26 26 H 0.97004 * 125.74186 * 180.24168 * 25 24 20 27 27 H 1.09000 * 109.47065 * 300.00089 * 1 2 3 28 28 H 1.09001 * 109.47249 * 59.99536 * 1 2 3 29 29 H 1.08994 * 109.47664 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47739 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47212 * 300.00486 * 3 2 1 32 32 H 1.09000 * 109.46998 * 59.99870 * 3 2 1 33 33 H 1.08997 * 109.46995 * 305.03807 * 4 2 1 34 34 H 1.09006 * 109.46988 * 65.03682 * 4 2 1 35 35 H 1.08999 * 109.47154 * 185.03604 * 4 2 1 36 36 H 1.08990 * 109.47434 * 304.96484 * 5 2 1 37 37 H 1.09005 * 109.46767 * 184.96426 * 5 2 1 38 38 H 1.09001 * 109.47326 * 22.83131 * 7 6 5 39 39 H 1.09004 * 109.47756 * 142.83100 * 7 6 5 40 40 H 0.96996 * 120.00578 * 179.97438 * 11 10 8 41 41 H 1.08003 * 126.15484 * 359.97438 * 19 18 16 42 42 H 1.07999 * 125.27910 * 179.97438 * 22 21 20 43 43 H 1.08005 * 126.41081 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 7 1.6517 -2.1327 1.1908 7 6 0.3352 -2.5511 1.6786 8 6 0.4622 -3.0644 3.0898 9 1 1.4271 -3.0781 3.5747 10 6 -0.6535 -3.5166 3.7619 11 7 -1.8287 -3.4995 3.1717 12 14 -0.4960 -4.1536 5.5108 13 1 0.9220 -4.0672 5.9433 14 1 -1.3397 -3.3314 6.4150 15 1 -0.9452 -5.5680 5.5650 16 6 2.5057 -3.0464 0.6883 17 8 3.6068 -2.7016 0.3003 18 6 2.1066 -4.4533 0.6036 19 6 2.7883 -5.4468 -0.0648 20 6 2.0741 -6.6385 0.1018 21 8 2.0352 -7.9576 -0.1885 22 6 0.9441 -8.5102 0.3681 23 6 0.2525 -7.5662 1.0304 24 6 0.9559 -6.3487 0.8772 25 7 0.9849 -5.0127 1.1844 26 1 0.3275 -4.5396 1.7181 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6048 -1.7195 -1.2955 34 1 1.7521 -0.1579 -2.1370 35 1 3.1262 -0.8001 -1.2054 36 1 1.6058 -0.2615 2.1369 37 1 3.1263 -0.6449 1.2948 38 1 -0.3459 -1.7002 1.6614 39 1 -0.0552 -3.3419 1.0380 40 1 -2.6135 -3.8180 3.6444 41 1 3.7083 -5.3272 -0.6177 42 1 0.6657 -9.5511 0.2948 43 1 -0.6681 -7.7105 1.5765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131910163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:28 Heat of formation + Delta-G solvation = 30.031726 kcal Electronic energy + Delta-G solvation = -26244.850254 eV Core-core repulsion = 22679.344516 eV Total energy + Delta-G solvation = -3565.505739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.35242 -39.97851 -38.23880 -36.63543 -34.74558 -32.70949 -31.82197 -29.93091 -28.19405 -27.88840 -26.98795 -26.80995 -25.68311 -23.45460 -22.23817 -20.76002 -20.09262 -19.15536 -18.30167 -17.18264 -16.94424 -16.50629 -15.68498 -15.64995 -15.00103 -14.82144 -14.62655 -14.24359 -13.79168 -13.50945 -13.28773 -13.03240 -12.76440 -12.61266 -12.42069 -12.32943 -12.10676 -11.89545 -11.61738 -11.33077 -11.25744 -11.15664 -11.13169 -10.92142 -10.58192 -10.48153 -10.38234 -10.21604 -9.94201 -9.56699 -9.37408 -8.91548 -7.95918 -7.87976 -7.25994 -6.54616 -4.68000 1.63920 2.75202 3.02791 3.12385 3.13276 3.18696 3.27211 3.59161 3.94198 3.99702 4.15053 4.75867 5.09941 5.12860 5.20077 5.27755 5.29531 5.52928 5.79915 5.80820 5.83563 5.88198 6.03945 6.06897 6.08413 6.14877 6.16684 6.22755 6.32173 6.36725 6.40058 6.46466 6.49674 6.59099 6.68534 6.75813 6.82717 6.88114 7.21638 7.39141 7.46928 7.62669 7.70963 8.07988 8.31441 8.47410 8.83161 9.03458 10.47442 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.006935 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.393081 B = 4036.711585 C = 5910.460613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.134 4.134 5 C 0.130 3.870 6 N -0.588 5.588 7 C 0.210 3.790 8 C -0.561 4.561 9 H 0.071 0.929 10 C 0.066 3.934 11 N -0.880 5.880 12 Si 0.898 3.102 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.590 3.410 17 O -0.553 6.553 18 C 0.025 3.975 19 C -0.115 4.115 20 C -0.049 4.049 21 O -0.178 6.178 22 C -0.013 4.013 23 C -0.191 4.191 24 C -0.006 4.006 25 N -0.501 5.501 26 H 0.454 0.546 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.273 0.727 41 H 0.150 0.850 42 H 0.205 0.795 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -0.126 -4.886 5.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.191 4.191 5 C 0.006 3.994 6 N -0.317 5.317 7 C 0.090 3.910 8 C -0.599 4.599 9 H 0.089 0.911 10 C -0.140 4.140 11 N -0.516 5.516 12 Si 0.724 3.276 13 H -0.192 1.192 14 H -0.203 1.203 15 H -0.203 1.203 16 C 0.379 3.621 17 O -0.433 6.433 18 C -0.092 4.092 19 C -0.143 4.143 20 C -0.100 4.100 21 O -0.077 6.077 22 C -0.080 4.080 23 C -0.213 4.213 24 C -0.122 4.122 25 N -0.118 5.118 26 H 0.314 0.686 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.168 0.832 42 H 0.221 0.779 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.119 0.049 -5.071 5.496 hybrid contribution -0.803 -0.287 1.472 1.701 sum 1.316 -0.238 -3.600 3.840 Atomic orbital electron populations 1.22024 0.94451 1.02738 1.00944 1.20952 0.96111 0.95189 0.96326 1.21783 1.00886 0.95232 1.01448 1.21820 1.01697 0.99816 0.95777 1.21442 1.00607 0.80516 0.96793 1.47964 1.17711 1.06592 1.59464 1.19985 0.79499 0.97507 0.94041 1.21717 0.95469 1.43731 0.99015 0.91070 1.25076 0.94809 0.95077 0.99007 1.69926 0.99032 1.44708 1.37981 0.86391 0.78980 0.78810 0.83400 1.19185 1.20252 1.20340 1.16843 0.84242 0.83207 0.77854 1.90747 1.21167 1.80353 1.50996 1.20255 0.90884 0.93754 1.04261 1.19626 1.01649 0.85710 1.07294 1.19349 1.00287 0.83693 1.06679 1.83928 1.41184 1.19169 1.63378 1.23810 0.86834 0.98668 0.98723 1.20566 1.03233 0.89605 1.07858 1.19237 0.99943 0.87591 1.05423 1.43795 1.21841 1.05355 1.40784 0.68613 0.92663 0.93474 0.91516 0.92670 0.92823 0.92720 0.93005 0.93705 0.91869 0.90488 0.90277 0.92209 0.94614 0.91737 0.83233 0.77871 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.36 37.16 0.27 -1.94 16 2 C -0.08 -1.28 0.85 -154.51 -0.13 -1.41 16 3 C -0.14 -1.69 8.47 37.15 0.31 -1.37 16 4 C -0.13 -2.12 7.22 37.16 0.27 -1.85 16 5 C 0.13 2.27 4.59 -4.04 -0.02 2.25 16 6 N -0.59 -11.93 1.98 -176.67 -0.35 -12.28 16 7 C 0.21 4.65 3.56 -5.20 -0.02 4.63 16 8 C -0.56 -13.52 7.28 -34.44 -0.25 -13.77 16 9 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 10 C 0.07 1.61 5.05 -17.82 -0.09 1.52 16 11 N -0.88 -21.90 13.29 55.43 0.74 -21.16 16 12 Si 0.90 19.45 29.54 -169.99 -5.02 14.43 16 13 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 16 C 0.59 12.66 6.09 -12.93 -0.08 12.58 16 17 O -0.55 -12.26 15.03 5.16 0.08 -12.18 16 18 C 0.03 0.54 6.60 -81.86 -0.54 0.00 16 19 C -0.11 -2.31 10.60 -39.11 -0.41 -2.73 16 20 C -0.05 -0.97 8.20 -38.62 -0.32 -1.29 16 21 O -0.18 -3.13 10.68 3.20 0.03 -3.10 16 22 C -0.01 -0.19 12.02 29.40 0.35 0.17 16 23 C -0.19 -3.27 10.89 -39.70 -0.43 -3.70 16 24 C -0.01 -0.12 8.11 -83.95 -0.68 -0.80 16 25 N -0.50 -11.07 4.84 -7.04 -0.03 -11.11 16 26 H 0.45 10.51 3.24 -40.82 -0.13 10.38 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.17 5.70 -51.93 -0.30 0.87 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.92 6.86 -51.93 -0.36 0.57 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.06 7.39 -51.93 -0.38 0.67 16 36 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 37 H 0.08 1.40 7.28 -51.93 -0.38 1.03 16 38 H 0.06 1.34 5.84 -51.93 -0.30 1.04 16 39 H 0.04 0.85 5.17 -51.93 -0.27 0.58 16 40 H 0.27 6.46 8.31 -40.82 -0.34 6.13 16 41 H 0.15 2.70 8.06 -52.48 -0.42 2.28 16 42 H 0.20 1.84 8.06 -52.49 -0.42 1.41 16 43 H 0.15 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -27.01 342.30 -7.05 -34.06 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -5.89 Total: 13.88 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.76 Total: -7.71 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.35 Total: -44.55 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.11 Total: -15.28 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.01 -7.05 -34.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131910163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.092 kcal (2) G-P(sol) polarization free energy of solvation -27.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds