Wall clock time and date at job start Tue Mar 31 2020 08:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47573 * 2 1 4 4 C 1.53005 * 109.46978 * 240.00015 * 2 1 3 5 5 C 1.52999 * 109.46898 * 120.00263 * 2 1 3 6 6 N 1.46499 * 109.47185 * 64.96849 * 5 2 1 7 7 C 1.46494 * 120.00084 * 274.19415 * 6 5 2 8 8 C 1.50700 * 109.47123 * 262.83382 * 7 6 5 9 9 H 1.08003 * 120.00325 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00119 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00318 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00150 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47048 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47321 * 120.00228 * 12 10 8 15 15 H 1.48502 * 109.47593 * 240.00139 * 12 10 8 16 16 C 1.34783 * 120.00233 * 94.19086 * 6 5 2 17 17 O 1.21730 * 119.99712 * 1.03061 * 16 6 5 18 18 C 1.46488 * 120.00081 * 181.30125 * 16 6 5 19 19 C 1.37784 * 125.85799 * 169.54501 * 18 16 6 20 20 C 1.39928 * 107.68605 * 179.97438 * 19 18 16 21 21 O 1.35124 * 145.13771 * 180.02562 * 20 19 18 22 22 C 1.34377 * 109.62516 * 180.02562 * 21 20 19 23 23 C 1.34468 * 109.44479 * 359.97438 * 22 21 20 24 24 C 1.39129 * 107.40821 * 0.02562 * 20 19 18 25 25 N 1.37114 * 108.10674 * 359.75824 * 24 20 19 26 26 H 0.97004 * 125.74186 * 180.24168 * 25 24 20 27 27 H 1.09000 * 109.47065 * 300.00089 * 1 2 3 28 28 H 1.09001 * 109.47249 * 59.99536 * 1 2 3 29 29 H 1.08994 * 109.47664 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47739 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47212 * 300.00486 * 3 2 1 32 32 H 1.09000 * 109.46998 * 59.99870 * 3 2 1 33 33 H 1.08997 * 109.46995 * 305.03807 * 4 2 1 34 34 H 1.09006 * 109.46988 * 65.03682 * 4 2 1 35 35 H 1.08999 * 109.47154 * 185.03604 * 4 2 1 36 36 H 1.08990 * 109.47434 * 304.96484 * 5 2 1 37 37 H 1.09005 * 109.46767 * 184.96426 * 5 2 1 38 38 H 1.09001 * 109.47326 * 22.83131 * 7 6 5 39 39 H 1.09004 * 109.47756 * 142.83100 * 7 6 5 40 40 H 0.96996 * 120.00578 * 179.97438 * 11 10 8 41 41 H 1.08003 * 126.15484 * 359.97438 * 19 18 16 42 42 H 1.07999 * 125.27910 * 179.97438 * 22 21 20 43 43 H 1.08005 * 126.41081 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 7 1.6517 -2.1327 1.1908 7 6 0.3352 -2.5511 1.6786 8 6 0.4622 -3.0644 3.0898 9 1 1.4271 -3.0781 3.5747 10 6 -0.6535 -3.5166 3.7619 11 7 -1.8287 -3.4995 3.1717 12 14 -0.4960 -4.1536 5.5108 13 1 0.9220 -4.0672 5.9433 14 1 -1.3397 -3.3314 6.4150 15 1 -0.9452 -5.5680 5.5650 16 6 2.5057 -3.0464 0.6883 17 8 3.6068 -2.7016 0.3003 18 6 2.1066 -4.4533 0.6036 19 6 2.7883 -5.4468 -0.0648 20 6 2.0741 -6.6385 0.1018 21 8 2.0352 -7.9576 -0.1885 22 6 0.9441 -8.5102 0.3681 23 6 0.2525 -7.5662 1.0304 24 6 0.9559 -6.3487 0.8772 25 7 0.9849 -5.0127 1.1844 26 1 0.3275 -4.5396 1.7181 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6048 -1.7195 -1.2955 34 1 1.7521 -0.1579 -2.1370 35 1 3.1262 -0.8001 -1.2054 36 1 1.6058 -0.2615 2.1369 37 1 3.1263 -0.6449 1.2948 38 1 -0.3459 -1.7002 1.6614 39 1 -0.0552 -3.3419 1.0380 40 1 -2.6135 -3.8180 3.6444 41 1 3.7083 -5.3272 -0.6177 42 1 0.6657 -9.5511 0.2948 43 1 -0.6681 -7.7105 1.5765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131910163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:27 Heat of formation + Delta-G solvation = 16.446574 kcal Electronic energy + Delta-G solvation = -26245.439351 eV Core-core repulsion = 22679.344516 eV Total energy + Delta-G solvation = -3566.094835 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.80182 -41.54209 -39.72351 -38.13853 -36.38035 -34.48197 -33.20432 -31.51465 -29.76126 -29.51731 -28.14929 -28.12545 -27.13839 -25.21102 -23.72448 -22.27508 -21.54951 -20.65919 -19.68433 -18.94346 -18.50117 -18.07915 -17.22665 -17.13981 -16.62259 -16.41929 -16.17176 -15.59180 -15.18492 -14.92061 -14.69803 -14.50371 -14.48773 -14.17610 -13.97211 -13.63306 -13.47489 -13.31681 -13.06750 -12.88444 -12.77345 -12.58078 -12.54531 -12.43963 -12.19945 -12.02790 -11.78956 -11.58559 -11.53189 -11.07269 -10.97391 -10.75297 -9.58159 -9.45783 -8.75241 -8.40677 -6.60556 0.14739 1.28378 1.30074 1.35620 1.44683 1.70170 1.79332 2.02870 2.24315 2.35066 2.55710 2.87005 3.65331 3.84293 3.87808 3.94342 4.04552 4.10497 4.40021 4.48801 4.56060 4.62117 4.63592 4.74941 4.79626 4.82543 4.89963 4.91281 4.93173 4.98827 5.06154 5.07496 5.11992 5.21139 5.30989 5.43967 5.49436 5.50439 5.54300 5.65462 5.78801 5.88177 6.26249 6.33917 6.60824 6.65760 7.09783 7.20744 8.60078 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.006935 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.393081 B = 4036.711585 C = 5910.460613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.127 4.127 5 C 0.124 3.876 6 N -0.586 5.586 7 C 0.228 3.772 8 C -0.566 4.566 9 H 0.053 0.947 10 C 0.036 3.964 11 N -0.899 5.899 12 Si 0.947 3.053 13 H -0.276 1.276 14 H -0.269 1.269 15 H -0.273 1.273 16 C 0.586 3.414 17 O -0.568 6.568 18 C -0.009 4.009 19 C -0.109 4.109 20 C -0.069 4.069 21 O -0.180 6.180 22 C 0.032 3.968 23 C -0.227 4.227 24 C -0.024 4.024 25 N -0.517 5.517 26 H 0.447 0.553 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.023 0.977 40 H 0.277 0.723 41 H 0.164 0.836 42 H 0.267 0.733 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 -0.930 -5.102 5.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 C -0.187 4.187 4 C -0.184 4.184 5 C 0.002 3.998 6 N -0.315 5.315 7 C 0.106 3.894 8 C -0.604 4.604 9 H 0.071 0.929 10 C -0.168 4.168 11 N -0.536 5.536 12 Si 0.771 3.229 13 H -0.201 1.201 14 H -0.194 1.194 15 H -0.198 1.198 16 C 0.376 3.624 17 O -0.449 6.449 18 C -0.124 4.124 19 C -0.137 4.137 20 C -0.120 4.120 21 O -0.079 6.079 22 C -0.035 4.035 23 C -0.249 4.249 24 C -0.140 4.140 25 N -0.133 5.133 26 H 0.305 0.695 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.086 0.914 41 H 0.182 0.818 42 H 0.282 0.718 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.797 -0.736 -5.297 5.642 hybrid contribution -0.720 -0.181 1.500 1.674 sum 1.077 -0.917 -3.797 4.052 Atomic orbital electron populations 1.21957 0.94442 1.01214 1.02050 1.20932 0.95998 0.96668 0.94529 1.21735 1.01135 0.92996 1.02825 1.21743 1.00682 0.98786 0.97186 1.21659 1.00467 0.79326 0.98374 1.47953 1.16899 1.07638 1.58973 1.19674 0.80131 0.96664 0.92890 1.21711 0.94736 1.44204 0.99797 0.92900 1.25576 0.94542 0.95085 1.01571 1.69975 0.99442 1.45195 1.39014 0.85654 0.78336 0.78623 0.80242 1.20119 1.19419 1.19820 1.16933 0.84179 0.83524 0.77785 1.90713 1.21584 1.80688 1.51953 1.20401 0.91774 0.94185 1.06086 1.19844 1.01721 0.85767 1.06344 1.19380 1.00363 0.84706 1.07522 1.83961 1.42437 1.17904 1.63567 1.24989 0.83893 1.00273 0.94345 1.20958 1.04795 0.88764 1.10335 1.19969 1.00966 0.87798 1.05259 1.43738 1.21978 1.06177 1.41393 0.69523 0.92482 0.91379 0.94317 0.92290 0.91038 0.91765 0.95714 0.91408 0.93000 0.90364 0.90660 0.92707 0.96007 0.91365 0.81845 0.71772 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 7.36 71.98 0.53 -3.68 16 2 C -0.08 -2.39 0.85 -52.18 -0.04 -2.44 16 3 C -0.13 -2.96 8.47 71.98 0.61 -2.35 16 4 C -0.13 -4.00 7.22 71.98 0.52 -3.48 16 5 C 0.12 4.43 4.59 86.38 0.40 4.82 16 6 N -0.59 -24.72 1.98 -831.07 -1.64 -26.37 16 7 C 0.23 10.48 3.56 85.63 0.31 10.79 16 8 C -0.57 -28.08 7.28 25.60 0.19 -27.89 16 9 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 10 C 0.04 1.78 5.05 84.65 0.43 2.21 16 11 N -0.90 -45.13 13.29 21.45 0.28 -44.84 16 12 Si 0.95 39.92 29.54 68.60 2.03 41.95 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 C 0.59 26.22 6.09 86.39 0.53 26.75 16 17 O -0.57 -26.03 15.03 -4.45 -0.07 -26.10 16 18 C -0.01 -0.42 6.60 40.19 0.27 -0.15 16 19 C -0.11 -4.47 10.60 22.57 0.24 -4.23 16 20 C -0.07 -2.73 8.20 22.89 0.19 -2.54 16 21 O -0.18 -5.93 10.68 -11.48 -0.12 -6.05 16 22 C 0.03 0.80 12.02 66.96 0.80 1.60 16 23 C -0.23 -7.37 10.89 22.20 0.24 -7.13 16 24 C -0.02 -0.98 8.11 39.32 0.32 -0.66 16 25 N -0.52 -23.64 4.84 -176.20 -0.85 -24.50 16 26 H 0.45 21.51 3.24 -92.71 -0.30 21.21 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.38 5.70 -2.39 -0.01 1.36 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.02 0.89 6.86 -2.39 -0.02 0.87 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.05 1.74 7.39 -2.39 -0.02 1.72 16 36 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 37 H 0.07 2.73 7.28 -2.38 -0.02 2.71 16 38 H 0.06 2.56 5.84 -2.39 -0.01 2.54 16 39 H 0.02 1.10 5.17 -2.38 -0.01 1.09 16 40 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 41 H 0.16 6.01 8.06 -2.91 -0.02 5.98 16 42 H 0.27 3.11 8.06 -2.91 -0.02 3.08 16 43 H 0.16 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -60.03 342.30 5.87 -54.17 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: 0.73 Total: 40.11 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.51 Total: -8.38 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -2.21 Total: -95.71 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.19 Total: -32.15 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -60.03 5.87 -54.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131910163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.612 kcal (2) G-P(sol) polarization free energy of solvation -60.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds