Wall clock time and date at job start Tue Mar 31 2020 08:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 C 1.52997 * 109.47296 * 120.00023 * 2 1 3 5 5 C 1.50700 * 109.47195 * 175.00244 * 4 2 1 6 6 O 1.21292 * 119.99983 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99931 * 179.97438 * 5 4 2 8 8 C 1.39933 * 119.99939 * 174.86114 * 7 5 4 9 9 C 1.38895 * 120.06672 * 326.75636 * 8 7 5 10 10 C 1.38093 * 119.92428 * 179.71862 * 9 8 7 11 11 C 1.38311 * 120.07060 * 0.57600 * 10 9 8 12 12 C 1.38255 * 120.14161 * 359.68045 * 11 10 9 13 13 C 1.50693 * 119.96889 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.47423 * 270.02407 * 13 12 11 15 15 C 1.34770 * 120.00011 * 179.97438 * 14 13 12 16 16 O 1.21684 * 120.00569 * 359.97438 * 15 14 13 17 17 C 1.46381 * 120.00048 * 179.97438 * 15 14 13 18 18 H 1.08009 * 119.99719 * 6.07777 * 17 15 14 19 19 C 1.40050 * 120.00438 * 186.07225 * 17 15 14 20 20 N 1.30675 * 119.99704 * 353.82571 * 19 17 15 21 21 Si 1.86800 * 120.00040 * 173.82170 * 19 17 15 22 22 H 1.48495 * 109.46960 * 94.98914 * 21 19 17 23 23 H 1.48503 * 109.46853 * 214.98626 * 21 19 17 24 24 H 1.48499 * 109.47276 * 334.98456 * 21 19 17 25 25 C 1.38137 * 120.07002 * 0.03825 * 12 11 10 26 26 H 1.09003 * 109.46675 * 299.99827 * 1 2 3 27 27 H 1.08997 * 109.47359 * 59.99792 * 1 2 3 28 28 H 1.09000 * 109.46713 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47179 * 240.00041 * 2 1 3 30 30 H 1.09001 * 109.47112 * 60.00001 * 3 2 1 31 31 H 1.08997 * 109.47083 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47225 * 300.00290 * 3 2 1 33 33 H 1.09001 * 109.46885 * 294.99986 * 4 2 1 34 34 H 1.08998 * 109.47250 * 54.99607 * 4 2 1 35 35 H 0.97001 * 120.00452 * 354.86317 * 7 5 4 36 36 H 1.07996 * 120.04061 * 359.97438 * 9 8 7 37 37 H 1.08002 * 119.96403 * 180.25329 * 10 9 8 38 38 H 1.08002 * 119.92848 * 179.69735 * 11 10 9 39 39 H 1.09007 * 109.46872 * 30.01966 * 13 12 11 40 40 H 1.08999 * 109.47549 * 150.01774 * 13 12 11 41 41 H 0.97003 * 119.99595 * 359.97438 * 14 13 12 42 42 H 0.96995 * 119.99660 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.03751 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.8293 1.1888 6 8 4.1451 -0.3746 0.2398 7 7 4.2150 -1.4312 2.1894 8 6 5.5965 -1.6276 2.0844 9 6 6.1720 -1.8746 0.8447 10 6 7.5364 -2.0623 0.7436 11 6 8.3281 -2.0163 1.8768 12 6 7.7575 -1.7760 3.1130 13 6 8.6238 -1.7261 4.3450 14 7 8.7256 -3.0675 4.9251 15 6 9.4558 -3.2658 6.0403 16 8 10.0311 -2.3308 6.5653 17 6 9.5570 -4.6060 6.6203 18 1 9.1295 -5.4521 6.1026 19 6 10.2083 -4.7913 7.8462 20 7 10.8296 -3.7915 8.4136 21 14 10.1885 -6.4675 8.6704 22 1 11.4205 -7.2125 8.3066 23 1 10.1321 -6.2938 10.1442 24 1 8.9972 -7.2287 8.2158 25 6 6.3941 -1.5817 3.2200 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.7517 -0.1583 2.1369 34 1 1.6054 -1.7197 1.2952 35 1 3.7418 -1.7282 2.9824 36 1 5.5537 -1.9158 -0.0398 37 1 7.9851 -2.2503 -0.2206 38 1 9.3943 -2.1683 1.7958 39 1 9.6184 -1.3704 4.0757 40 1 8.1804 -1.0478 5.0739 41 1 8.2673 -3.8130 4.5064 42 1 11.2810 -3.9199 9.2625 43 1 5.9489 -1.3943 4.1861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133441207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:56 Heat of formation + Delta-G solvation = -67.561436 kcal Electronic energy + Delta-G solvation = -23597.853044 eV Core-core repulsion = 20028.115348 eV Total energy + Delta-G solvation = -3569.737696 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77070 -38.94792 -37.17640 -36.05338 -34.94780 -33.47233 -32.35353 -30.64487 -30.24583 -28.05419 -27.40922 -26.80419 -24.86564 -22.76136 -22.16577 -20.54540 -20.00758 -19.62764 -17.85998 -17.42523 -16.62206 -16.31699 -15.89498 -15.31982 -15.11450 -14.91522 -14.44744 -14.30540 -14.04788 -14.01422 -13.62379 -13.09786 -12.81599 -12.76289 -12.63868 -12.45878 -12.27399 -12.03445 -11.59313 -11.52521 -11.37622 -11.21598 -11.20334 -11.04409 -10.95753 -10.84756 -10.44862 -10.40117 -10.23156 -9.83584 -8.85018 -8.76686 -8.12028 -7.58468 -7.51148 -6.19591 -4.63721 1.31571 1.46618 2.40646 2.84035 3.13428 3.20740 3.24651 3.85284 4.12473 4.29815 4.41800 4.53715 4.58450 4.86289 4.95089 5.01006 5.10419 5.17234 5.18026 5.27159 5.30307 5.35639 5.46285 5.51024 5.56353 5.60824 5.64839 5.77885 5.79788 6.00673 6.04764 6.12757 6.18467 6.34017 6.36538 6.46693 6.59309 6.88387 7.09210 7.20541 7.43621 7.90944 7.92954 8.07867 8.33268 9.02350 9.53314 10.59327 10.77729 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024916 B = 0.002377 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.506133 B =11778.592367 C =12258.981086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.155 4.155 4 C -0.137 4.137 5 C 0.511 3.489 6 O -0.518 6.518 7 N -0.674 5.674 8 C 0.138 3.862 9 C -0.124 4.124 10 C -0.104 4.104 11 C -0.117 4.117 12 C -0.067 4.067 13 C 0.170 3.830 14 N -0.762 5.762 15 C 0.555 3.445 16 O -0.581 6.581 17 C -0.545 4.545 18 H 0.068 0.932 19 C 0.087 3.913 20 N -0.768 5.768 21 Si 0.907 3.093 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.129 4.129 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.410 0.590 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.381 0.619 42 H 0.268 0.732 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.240 4.207 -15.351 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.212 4.212 4 C -0.177 4.177 5 C 0.299 3.701 6 O -0.393 6.393 7 N -0.319 5.319 8 C 0.045 3.955 9 C -0.144 4.144 10 C -0.123 4.123 11 C -0.136 4.136 12 C -0.069 4.069 13 C 0.045 3.955 14 N -0.418 5.418 15 C 0.359 3.641 16 O -0.464 6.464 17 C -0.582 4.582 18 H 0.086 0.914 19 C -0.132 4.132 20 N -0.397 5.397 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.150 4.150 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.246 0.754 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.213 0.787 42 H 0.079 0.921 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.329 5.330 -15.490 24.583 hybrid contribution -0.508 -1.331 0.687 1.581 sum -18.837 3.999 -14.803 24.289 Atomic orbital electron populations 1.21866 0.94818 1.01782 1.02102 1.20872 0.95175 0.96964 0.96969 1.21976 1.03197 0.94908 1.01153 1.21810 0.91102 1.03379 1.01426 1.20909 0.90405 0.76667 0.82083 1.90694 1.70101 1.45516 1.32951 1.43603 1.06766 1.59574 1.21960 1.17671 0.82646 1.00643 0.94573 1.21037 0.95473 1.01197 0.96687 1.21002 0.93146 0.99652 0.98500 1.21145 1.00340 1.00314 0.91846 1.19987 0.93335 0.98013 0.95517 1.19809 0.97140 0.88338 0.90181 1.46194 1.57228 1.07146 1.31226 1.18252 0.77711 0.90260 0.77914 1.90601 1.49161 1.44687 1.61960 1.20870 1.38721 0.92447 1.06169 0.91402 1.25712 0.93102 0.97605 0.96823 1.70029 1.23773 1.31119 1.14737 0.86366 0.79207 0.82628 0.78605 1.19828 1.20414 1.18873 1.20832 0.93201 1.03524 0.97437 0.92570 0.92309 0.92629 0.90345 0.93289 0.90675 0.92863 0.88596 0.88525 0.75391 0.85237 0.85863 0.85700 0.92318 0.92529 0.78740 0.92117 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.08 -0.58 2.57 -90.62 -0.23 -0.81 16 3 C -0.16 -1.28 8.93 37.16 0.33 -0.95 16 4 C -0.14 -0.88 5.18 -27.88 -0.14 -1.02 16 5 C 0.51 5.14 7.29 -10.99 -0.08 5.06 16 6 O -0.52 -6.93 11.64 5.55 0.06 -6.87 16 7 N -0.67 -6.63 5.34 -9.86 -0.05 -6.68 16 8 C 0.14 1.78 6.28 -83.69 -0.53 1.26 16 9 C -0.12 -1.66 8.66 -39.39 -0.34 -2.00 16 10 C -0.10 -1.36 10.04 -39.61 -0.40 -1.75 16 11 C -0.12 -1.68 9.70 -39.55 -0.38 -2.07 16 12 C -0.07 -1.06 5.25 -104.66 -0.55 -1.60 16 13 C 0.17 3.30 5.80 -5.20 -0.03 3.27 16 14 N -0.76 -17.06 5.54 -62.90 -0.35 -17.41 16 15 C 0.55 15.79 7.74 -12.99 -0.10 15.69 16 16 O -0.58 -18.88 15.05 5.20 0.08 -18.81 16 17 C -0.55 -15.38 9.53 -35.63 -0.34 -15.72 16 18 H 0.07 1.76 7.86 -52.48 -0.41 1.34 16 19 C 0.09 2.44 5.49 -17.36 -0.10 2.34 16 20 N -0.77 -23.04 11.85 55.55 0.66 -22.39 16 21 Si 0.91 20.06 29.56 -169.99 -5.03 15.03 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 25 C -0.13 -1.81 9.61 -39.39 -0.38 -2.19 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.66 7.95 -51.93 -0.41 0.24 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.81 5.95 -51.93 -0.31 0.50 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.41 2.81 8.82 -40.82 -0.36 2.45 16 36 H 0.13 1.73 6.41 -52.49 -0.34 1.40 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.06 1.20 8.09 -51.92 -0.42 0.78 16 40 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 41 H 0.38 7.65 8.44 -40.82 -0.34 7.31 16 42 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 43 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -35.88 362.63 -8.46 -44.34 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.38 Total: 8.25 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.92 Total: -0.95 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.26 Total: -46.48 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: 0.14 Total: -25.67 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.88 -8.46 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133441207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.219 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds