Wall clock time and date at job start Tue Mar 31 2020 08:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 C 1.52997 * 109.47296 * 120.00023 * 2 1 3 5 5 C 1.50700 * 109.47195 * 175.00244 * 4 2 1 6 6 O 1.21292 * 119.99983 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99931 * 179.97438 * 5 4 2 8 8 C 1.39933 * 119.99939 * 174.86114 * 7 5 4 9 9 C 1.38895 * 120.06672 * 326.75636 * 8 7 5 10 10 C 1.38093 * 119.92428 * 179.71862 * 9 8 7 11 11 C 1.38311 * 120.07060 * 0.57600 * 10 9 8 12 12 C 1.38255 * 120.14161 * 359.68045 * 11 10 9 13 13 C 1.50693 * 119.96889 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.47423 * 270.02407 * 13 12 11 15 15 C 1.34770 * 120.00011 * 179.97438 * 14 13 12 16 16 O 1.21684 * 120.00569 * 359.97438 * 15 14 13 17 17 C 1.46381 * 120.00048 * 179.97438 * 15 14 13 18 18 H 1.08009 * 119.99719 * 6.07777 * 17 15 14 19 19 C 1.40050 * 120.00438 * 186.07225 * 17 15 14 20 20 N 1.30675 * 119.99704 * 353.82571 * 19 17 15 21 21 Si 1.86800 * 120.00040 * 173.82170 * 19 17 15 22 22 H 1.48495 * 109.46960 * 94.98914 * 21 19 17 23 23 H 1.48503 * 109.46853 * 214.98626 * 21 19 17 24 24 H 1.48499 * 109.47276 * 334.98456 * 21 19 17 25 25 C 1.38137 * 120.07002 * 0.03825 * 12 11 10 26 26 H 1.09003 * 109.46675 * 299.99827 * 1 2 3 27 27 H 1.08997 * 109.47359 * 59.99792 * 1 2 3 28 28 H 1.09000 * 109.46713 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47179 * 240.00041 * 2 1 3 30 30 H 1.09001 * 109.47112 * 60.00001 * 3 2 1 31 31 H 1.08997 * 109.47083 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47225 * 300.00290 * 3 2 1 33 33 H 1.09001 * 109.46885 * 294.99986 * 4 2 1 34 34 H 1.08998 * 109.47250 * 54.99607 * 4 2 1 35 35 H 0.97001 * 120.00452 * 354.86317 * 7 5 4 36 36 H 1.07996 * 120.04061 * 359.97438 * 9 8 7 37 37 H 1.08002 * 119.96403 * 180.25329 * 10 9 8 38 38 H 1.08002 * 119.92848 * 179.69735 * 11 10 9 39 39 H 1.09007 * 109.46872 * 30.01966 * 13 12 11 40 40 H 1.08999 * 109.47549 * 150.01774 * 13 12 11 41 41 H 0.97003 * 119.99595 * 359.97438 * 14 13 12 42 42 H 0.96995 * 119.99660 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.03751 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.8293 1.1888 6 8 4.1451 -0.3746 0.2398 7 7 4.2150 -1.4312 2.1894 8 6 5.5965 -1.6276 2.0844 9 6 6.1720 -1.8746 0.8447 10 6 7.5364 -2.0623 0.7436 11 6 8.3281 -2.0163 1.8768 12 6 7.7575 -1.7760 3.1130 13 6 8.6238 -1.7261 4.3450 14 7 8.7256 -3.0675 4.9251 15 6 9.4558 -3.2658 6.0403 16 8 10.0311 -2.3308 6.5653 17 6 9.5570 -4.6060 6.6203 18 1 9.1295 -5.4521 6.1026 19 6 10.2083 -4.7913 7.8462 20 7 10.8296 -3.7915 8.4136 21 14 10.1885 -6.4675 8.6704 22 1 11.4205 -7.2125 8.3066 23 1 10.1321 -6.2938 10.1442 24 1 8.9972 -7.2287 8.2158 25 6 6.3941 -1.5817 3.2200 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.7517 -0.1583 2.1369 34 1 1.6054 -1.7197 1.2952 35 1 3.7418 -1.7282 2.9824 36 1 5.5537 -1.9158 -0.0398 37 1 7.9851 -2.2503 -0.2206 38 1 9.3943 -2.1683 1.7958 39 1 9.6184 -1.3704 4.0757 40 1 8.1804 -1.0478 5.0739 41 1 8.2673 -3.8130 4.5064 42 1 11.2810 -3.9199 9.2625 43 1 5.9489 -1.3943 4.1861 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133441207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:55 Heat of formation + Delta-G solvation = -92.287012 kcal Electronic energy + Delta-G solvation = -23598.925225 eV Core-core repulsion = 20028.115348 eV Total energy + Delta-G solvation = -3570.809877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66965 -40.10247 -39.10602 -36.79485 -35.94903 -35.14332 -34.44887 -32.10155 -31.22275 -28.93928 -28.57288 -27.94551 -26.53078 -23.70184 -23.28303 -21.81798 -21.30269 -20.74724 -19.38885 -18.56571 -17.82585 -17.38557 -17.25028 -16.80114 -16.24170 -16.08147 -15.93710 -15.67105 -15.14120 -14.88778 -14.62558 -14.59156 -14.37942 -13.99142 -13.61254 -13.31207 -13.23754 -13.11432 -13.02005 -12.76515 -12.72545 -12.65500 -12.54786 -12.23969 -12.03024 -11.98286 -11.75467 -11.57527 -11.37587 -10.92581 -10.72099 -10.08532 -9.70058 -9.50747 -9.11467 -8.29319 -6.84842 0.24143 0.33455 1.41387 1.42466 1.58596 1.59749 2.04683 2.25843 2.47093 2.72646 3.34266 3.60307 3.65413 3.72804 3.86506 3.94651 4.02959 4.18288 4.32706 4.35783 4.40725 4.54896 4.68156 4.71772 4.73657 4.75153 4.78374 4.86124 4.98034 5.05791 5.12184 5.26932 5.32412 5.33002 5.35040 5.46021 5.50501 5.54216 5.66474 5.87619 6.02005 6.19288 6.26540 6.43130 6.87094 7.13937 7.53617 8.48187 8.66974 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024916 B = 0.002377 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.506133 B =11778.592367 C =12258.981086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.154 4.154 4 C -0.129 4.129 5 C 0.508 3.492 6 O -0.554 6.554 7 N -0.666 5.666 8 C 0.142 3.858 9 C -0.128 4.128 10 C -0.099 4.099 11 C -0.124 4.124 12 C -0.079 4.079 13 C 0.177 3.823 14 N -0.747 5.747 15 C 0.538 3.462 16 O -0.633 6.633 17 C -0.572 4.572 18 H 0.088 0.912 19 C 0.028 3.972 20 N -0.822 5.822 21 Si 0.999 3.001 22 H -0.263 1.263 23 H -0.272 1.272 24 H -0.248 1.248 25 C -0.132 4.132 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.426 0.574 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.127 0.873 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.394 0.606 42 H 0.275 0.725 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.642 2.359 -15.787 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.211 4.211 4 C -0.169 4.169 5 C 0.298 3.702 6 O -0.431 6.431 7 N -0.313 5.313 8 C 0.047 3.953 9 C -0.148 4.148 10 C -0.117 4.117 11 C -0.144 4.144 12 C -0.080 4.080 13 C 0.053 3.947 14 N -0.402 5.402 15 C 0.342 3.658 16 O -0.521 6.521 17 C -0.609 4.609 18 H 0.106 0.894 19 C -0.187 4.187 20 N -0.451 5.451 21 Si 0.818 3.182 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.171 1.171 25 C -0.153 4.153 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.265 0.735 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.228 0.772 42 H 0.085 0.915 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.794 3.468 -15.965 26.444 hybrid contribution 0.188 -0.666 0.705 0.987 sum -20.606 2.802 -15.261 25.794 Atomic orbital electron populations 1.21820 0.93041 1.02654 1.02535 1.20863 0.96526 0.95894 0.96735 1.21947 1.01269 0.96175 1.01743 1.21873 0.87982 1.05153 1.01868 1.21640 0.91854 0.75513 0.81191 1.90688 1.71105 1.46967 1.34368 1.43624 1.05543 1.59300 1.22802 1.17709 0.84125 0.99483 0.93934 1.21215 0.95770 1.00884 0.96950 1.21231 0.92952 0.98483 0.99027 1.21200 1.00728 1.00633 0.91799 1.19640 0.93600 1.00537 0.94228 1.19736 0.97187 0.86354 0.91464 1.45841 1.55716 1.08895 1.29722 1.18646 0.77869 0.90238 0.79012 1.90554 1.51475 1.46104 1.63943 1.21407 1.39284 0.92989 1.07171 0.89417 1.27002 0.91792 1.02713 0.97239 1.70194 1.24865 1.34496 1.15563 0.84990 0.80028 0.76004 0.77159 1.18761 1.19733 1.17076 1.20845 0.92612 1.03515 0.98282 0.91656 0.92417 0.91531 0.92011 0.92314 0.93547 0.92716 0.86405 0.85892 0.73541 0.85056 0.83395 0.85474 0.93844 0.93848 0.77202 0.91529 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.19 71.98 0.66 -0.49 16 2 C -0.08 -1.01 2.57 -10.79 -0.03 -1.04 16 3 C -0.15 -2.41 8.93 71.98 0.64 -1.77 16 4 C -0.13 -1.29 5.18 29.85 0.15 -1.14 16 5 C 0.51 9.35 7.29 87.66 0.64 9.99 16 6 O -0.55 -14.50 11.64 -3.07 -0.04 -14.54 16 7 N -0.67 -11.82 5.34 -303.49 -1.62 -13.44 16 8 C 0.14 3.48 6.28 38.15 0.24 3.72 16 9 C -0.13 -3.25 8.66 22.39 0.19 -3.06 16 10 C -0.10 -2.42 10.04 22.25 0.22 -2.20 16 11 C -0.12 -3.51 9.70 22.29 0.22 -3.30 16 12 C -0.08 -2.48 5.25 -19.89 -0.10 -2.58 16 13 C 0.18 7.11 5.80 85.63 0.50 7.61 16 14 N -0.75 -34.13 5.54 -471.16 -2.61 -36.74 16 15 C 0.54 31.51 7.74 86.36 0.67 32.18 16 16 O -0.63 -42.96 15.05 -4.30 -0.06 -43.02 16 17 C -0.57 -32.48 9.53 24.83 0.24 -32.24 16 18 H 0.09 4.46 7.86 -2.91 -0.02 4.44 16 19 C 0.03 1.54 5.49 85.30 0.47 2.01 16 20 N -0.82 -50.48 11.85 21.84 0.26 -50.22 16 21 Si 1.00 40.71 29.56 68.60 2.03 42.74 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 25 C -0.13 -3.60 9.61 22.39 0.22 -3.38 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.98 7.95 -2.39 -0.02 0.96 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 1.01 5.95 -2.39 -0.01 0.99 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.43 4.76 8.82 -92.71 -0.82 3.94 16 36 H 0.13 3.35 6.41 -2.91 -0.02 3.33 16 37 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.04 1.86 8.09 -2.38 -0.02 1.84 16 40 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 41 H 0.39 15.81 8.44 -92.71 -0.78 15.03 16 42 H 0.27 15.23 8.29 -92.71 -0.77 14.47 16 43 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -80.81 362.63 2.31 -78.50 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.57 Total: 32.43 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.92 Total: 4.30 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -3.97 Total: -100.40 kcal Atomic # 8 Polarization: -57.46 SS G_CDS: -0.10 Total: -57.56 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -80.81 2.31 -78.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133441207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.792 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds