Wall clock time and date at job start Tue Mar 31 2020 08:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47607 * 2 1 4 4 C 1.53001 * 109.47269 * 239.99805 * 2 1 3 5 5 C 1.53005 * 109.46946 * 119.99982 * 2 1 3 6 6 C 1.50698 * 109.47247 * 59.99632 * 5 2 1 7 7 O 1.21284 * 120.00057 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99844 * 179.97438 * 6 5 2 9 9 N 1.40098 * 119.99521 * 180.02562 * 8 6 5 10 10 C 1.34781 * 119.99521 * 180.02562 * 9 8 6 11 11 O 1.21542 * 120.00510 * 0.02562 * 10 9 8 12 12 C 1.47886 * 119.99598 * 179.97438 * 10 9 8 13 13 C 1.39915 * 120.03143 * 359.97438 * 12 10 9 14 14 C 1.38328 * 120.36399 * 180.02562 * 13 12 10 15 15 C 1.37755 * 120.41072 * 359.97438 * 14 13 12 16 16 C 1.40744 * 120.03777 * 0.02562 * 15 14 13 17 17 C 1.41439 * 120.17691 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00305 * 24.40632 * 17 16 15 19 19 C 1.39937 * 120.00015 * 204.40385 * 17 16 15 20 20 N 1.30828 * 120.00202 * 17.84583 * 19 17 16 21 21 Si 1.86804 * 120.00094 * 197.84043 * 19 17 16 22 22 H 1.48505 * 109.46643 * 60.00420 * 21 19 17 23 23 H 1.48494 * 109.47065 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47088 * 300.00333 * 21 19 17 25 25 C 1.38995 * 120.02525 * 180.02562 * 12 10 9 26 26 H 1.09000 * 109.47177 * 300.00657 * 1 2 3 27 27 H 1.08998 * 109.47022 * 60.00073 * 1 2 3 28 28 H 1.09000 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47365 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46925 * 300.00118 * 3 2 1 31 31 H 1.08995 * 109.47002 * 59.99285 * 3 2 1 32 32 H 1.09004 * 109.46694 * 300.00009 * 4 2 1 33 33 H 1.08998 * 109.47000 * 60.00108 * 4 2 1 34 34 H 1.08999 * 109.47141 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47182 * 299.99678 * 5 2 1 36 36 H 1.08999 * 109.47152 * 180.02562 * 5 2 1 37 37 H 0.96990 * 120.00015 * 0.02562 * 8 6 5 38 38 H 0.96999 * 120.00787 * 0.02562 * 9 8 6 39 39 H 1.08004 * 119.81919 * 0.02562 * 13 12 10 40 40 H 1.08001 * 119.79583 * 179.97438 * 14 13 12 41 41 H 1.07996 * 119.97894 * 179.97438 * 15 14 13 42 42 H 0.96991 * 120.00411 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.20307 * 359.70165 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.5375 -2.1420 1.2494 7 8 0.8406 -2.5389 0.3395 8 7 1.8635 -2.9720 2.2600 9 7 1.3969 -4.2930 2.2597 10 6 1.7225 -5.1229 3.2706 11 8 2.4205 -4.7251 4.1827 12 6 1.2294 -6.5171 3.2706 13 6 0.4245 -6.9752 2.2219 14 6 -0.0409 -8.2778 2.2152 15 6 0.2828 -9.1392 3.2403 16 6 1.0914 -8.6964 4.3038 17 6 1.4260 -9.5785 5.3575 18 1 1.4205 -10.6456 5.1909 19 6 1.7644 -9.0687 6.6160 20 7 1.4448 -7.8399 6.9316 21 14 2.6724 -10.1427 7.8456 22 1 3.9736 -10.5648 7.2678 23 1 2.9104 -9.3737 9.0934 24 1 1.8544 -11.3433 8.1530 25 6 1.5644 -7.3733 4.3131 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.6766 -0.2074 2.1393 36 1 3.1299 -0.7209 1.2496 37 1 2.4212 -2.6548 2.9874 38 1 0.8395 -4.6104 1.5321 39 1 0.1651 -6.3081 1.4131 40 1 -0.6620 -8.6217 1.4013 41 1 -0.0847 -10.1547 3.2282 42 1 1.6797 -7.4864 7.8037 43 1 2.1887 -7.0252 5.1228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171482856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:19 Heat of formation + Delta-G solvation = -37.348166 kcal Electronic energy + Delta-G solvation = -24202.374093 eV Core-core repulsion = 20633.946543 eV Total energy + Delta-G solvation = -3568.427550 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47776 -39.14672 -37.26825 -36.62533 -34.92361 -33.82599 -31.78812 -29.99433 -29.51635 -27.94156 -27.36197 -27.30344 -25.36009 -22.94445 -21.49355 -20.97136 -20.11489 -18.95570 -17.96288 -17.54397 -16.81000 -15.81631 -15.72197 -15.21103 -14.83424 -14.68618 -14.63447 -14.38341 -14.15841 -14.03250 -13.29463 -13.04488 -12.81697 -12.59243 -12.47158 -12.32757 -11.95336 -11.78995 -11.66280 -11.28586 -11.23499 -11.14972 -10.96950 -10.88561 -10.82822 -10.75017 -10.56571 -10.17381 -9.79227 -9.75338 -9.29618 -9.26178 -8.16484 -7.69646 -7.60069 -6.86652 -4.47928 2.01156 2.07756 2.50298 2.75914 3.04007 3.05495 3.12093 3.70815 3.87091 4.15743 4.41649 4.55198 4.61899 4.73682 4.97748 5.23472 5.27688 5.32014 5.44238 5.51756 5.52322 5.58764 5.71644 5.75761 5.94092 5.94504 6.00865 6.05447 6.20878 6.35387 6.38847 6.61628 6.82300 6.91414 6.95636 7.00324 7.13997 7.28660 7.60432 7.66449 7.83702 7.93677 8.06783 8.12103 8.41802 8.72701 8.74675 8.79127 10.08056 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.002780 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.172618 B =10069.686765 C =10810.250831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.050 4.050 3 C -0.142 4.142 4 C -0.155 4.155 5 C -0.123 4.123 6 C 0.510 3.490 7 O -0.536 6.536 8 N -0.521 5.521 9 N -0.531 5.531 10 C 0.568 3.432 11 O -0.546 6.546 12 C -0.121 4.121 13 C -0.218 4.218 14 C -0.094 4.094 15 C -0.208 4.208 16 C 0.099 3.901 17 C -0.458 4.458 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.088 4.088 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.428 0.572 38 H 0.431 0.569 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.286 0.714 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 13.699 -8.896 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.050 4.050 3 C -0.199 4.199 4 C -0.212 4.212 5 C -0.165 4.165 6 C 0.297 3.703 7 O -0.412 6.412 8 N -0.267 5.267 9 N -0.282 5.282 10 C 0.359 3.641 11 O -0.423 6.423 12 C -0.126 4.126 13 C -0.239 4.239 14 C -0.113 4.113 15 C -0.228 4.228 16 C 0.096 3.904 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.108 4.108 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.270 0.730 38 H 0.274 0.726 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.491 13.881 -8.671 16.435 hybrid contribution 0.341 -0.300 0.668 0.808 sum 1.832 13.582 -8.002 15.870 Atomic orbital electron populations 1.22127 0.93944 1.04290 1.00867 1.20268 0.96529 0.94448 0.93780 1.21897 1.00908 0.95164 1.01964 1.22127 1.00041 1.02970 0.96074 1.21737 1.02724 0.90958 1.01060 1.20923 0.81014 0.87367 0.80997 1.90596 1.38389 1.76953 1.35302 1.44965 1.52870 1.02250 1.26611 1.45180 1.54752 1.00330 1.27959 1.19117 0.79419 0.85754 0.79827 1.90710 1.38823 1.77051 1.35730 1.19176 1.04091 0.90364 0.98921 1.20370 1.07376 0.96736 0.99382 1.20447 0.99497 0.93629 0.97692 1.21131 1.04198 0.99222 0.98276 1.17582 0.88982 0.91884 0.91960 1.19573 1.40338 0.94808 0.93938 0.89955 1.25980 0.93717 0.95404 0.99535 1.69772 1.33475 1.15447 1.22012 0.86303 0.80751 0.80422 0.78952 1.18671 1.20202 1.18908 1.21615 0.99507 0.93428 0.96266 0.93460 0.93031 0.89651 0.92612 0.92305 0.92607 0.89656 0.93033 0.93473 0.88449 0.88461 0.73011 0.72551 0.89059 0.88612 0.88402 0.90306 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.18 37.16 0.30 -1.24 16 2 C -0.05 -0.44 0.77 -154.51 -0.12 -0.56 16 3 C -0.14 -0.99 8.47 37.16 0.31 -0.68 16 4 C -0.16 -1.53 8.18 37.16 0.30 -1.23 16 5 C -0.12 -1.08 4.77 -27.88 -0.13 -1.22 16 6 C 0.51 6.46 7.36 -10.98 -0.08 6.38 16 7 O -0.54 -8.05 11.19 5.55 0.06 -7.99 16 8 N -0.52 -7.43 6.26 31.22 0.20 -7.24 16 9 N -0.53 -9.22 6.21 30.54 0.19 -9.03 16 10 C 0.57 12.06 7.89 -12.31 -0.10 11.97 16 11 O -0.55 -12.84 16.17 5.33 0.09 -12.76 16 12 C -0.12 -2.79 5.87 -105.04 -0.62 -3.40 16 13 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 14 C -0.09 -1.98 10.01 -39.73 -0.40 -2.38 16 15 C -0.21 -4.83 9.78 -38.81 -0.38 -5.21 16 16 C 0.10 2.54 5.57 -106.87 -0.60 1.95 16 17 C -0.46 -11.72 9.05 -37.73 -0.34 -12.06 16 18 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 19 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.78 -20.19 10.95 55.55 0.61 -19.58 16 21 Si 0.91 18.32 29.60 -169.99 -5.03 13.29 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 25 C -0.09 -2.27 8.23 -38.44 -0.32 -2.59 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.07 5.51 -51.93 -0.29 0.78 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 1.06 5.51 -51.93 -0.29 0.77 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.43 5.58 8.00 -182.61 -1.46 4.12 16 38 H 0.43 7.16 6.02 -182.60 -1.10 6.06 16 39 H 0.09 1.63 6.38 -52.48 -0.33 1.30 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 43 H 0.14 3.76 5.74 -52.48 -0.30 3.46 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -29.07 353.27 -9.15 -38.22 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.97 Total: 13.26 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -2.61 Total: -13.50 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.99 Total: -35.85 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.15 Total: -20.75 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.07 -9.15 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171482856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.873 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds