Wall clock time and date at job start Tue Mar 31 2020 08:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47607 * 2 1 4 4 C 1.53001 * 109.47269 * 239.99805 * 2 1 3 5 5 C 1.53005 * 109.46946 * 119.99982 * 2 1 3 6 6 C 1.50698 * 109.47247 * 59.99632 * 5 2 1 7 7 O 1.21284 * 120.00057 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99844 * 179.97438 * 6 5 2 9 9 N 1.40098 * 119.99521 * 180.02562 * 8 6 5 10 10 C 1.34781 * 119.99521 * 180.02562 * 9 8 6 11 11 O 1.21542 * 120.00510 * 0.02562 * 10 9 8 12 12 C 1.47886 * 119.99598 * 179.97438 * 10 9 8 13 13 C 1.39915 * 120.03143 * 359.97438 * 12 10 9 14 14 C 1.38328 * 120.36399 * 180.02562 * 13 12 10 15 15 C 1.37755 * 120.41072 * 359.97438 * 14 13 12 16 16 C 1.40744 * 120.03777 * 0.02562 * 15 14 13 17 17 C 1.41439 * 120.17691 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00305 * 24.40632 * 17 16 15 19 19 C 1.39937 * 120.00015 * 204.40385 * 17 16 15 20 20 N 1.30828 * 120.00202 * 17.84583 * 19 17 16 21 21 Si 1.86804 * 120.00094 * 197.84043 * 19 17 16 22 22 H 1.48505 * 109.46643 * 60.00420 * 21 19 17 23 23 H 1.48494 * 109.47065 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47088 * 300.00333 * 21 19 17 25 25 C 1.38995 * 120.02525 * 180.02562 * 12 10 9 26 26 H 1.09000 * 109.47177 * 300.00657 * 1 2 3 27 27 H 1.08998 * 109.47022 * 60.00073 * 1 2 3 28 28 H 1.09000 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47365 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.46925 * 300.00118 * 3 2 1 31 31 H 1.08995 * 109.47002 * 59.99285 * 3 2 1 32 32 H 1.09004 * 109.46694 * 300.00009 * 4 2 1 33 33 H 1.08998 * 109.47000 * 60.00108 * 4 2 1 34 34 H 1.08999 * 109.47141 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47182 * 299.99678 * 5 2 1 36 36 H 1.08999 * 109.47152 * 180.02562 * 5 2 1 37 37 H 0.96990 * 120.00015 * 0.02562 * 8 6 5 38 38 H 0.96999 * 120.00787 * 0.02562 * 9 8 6 39 39 H 1.08004 * 119.81919 * 0.02562 * 13 12 10 40 40 H 1.08001 * 119.79583 * 179.97438 * 14 13 12 41 41 H 1.07996 * 119.97894 * 179.97438 * 15 14 13 42 42 H 0.96991 * 120.00411 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.20307 * 359.70165 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.5375 -2.1420 1.2494 7 8 0.8406 -2.5389 0.3395 8 7 1.8635 -2.9720 2.2600 9 7 1.3969 -4.2930 2.2597 10 6 1.7225 -5.1229 3.2706 11 8 2.4205 -4.7251 4.1827 12 6 1.2294 -6.5171 3.2706 13 6 0.4245 -6.9752 2.2219 14 6 -0.0409 -8.2778 2.2152 15 6 0.2828 -9.1392 3.2403 16 6 1.0914 -8.6964 4.3038 17 6 1.4260 -9.5785 5.3575 18 1 1.4205 -10.6456 5.1909 19 6 1.7644 -9.0687 6.6160 20 7 1.4448 -7.8399 6.9316 21 14 2.6724 -10.1427 7.8456 22 1 3.9736 -10.5648 7.2678 23 1 2.9104 -9.3737 9.0934 24 1 1.8544 -11.3433 8.1530 25 6 1.5644 -7.3733 4.3131 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 1.6766 -0.2074 2.1393 36 1 3.1299 -0.7209 1.2496 37 1 2.4212 -2.6548 2.9874 38 1 0.8395 -4.6104 1.5321 39 1 0.1651 -6.3081 1.4131 40 1 -0.6620 -8.6217 1.4013 41 1 -0.0847 -10.1547 3.2282 42 1 1.6797 -7.4864 7.8037 43 1 2.1887 -7.0252 5.1228 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171482856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:18 Heat of formation + Delta-G solvation = -54.599716 kcal Electronic energy + Delta-G solvation = -24203.122177 eV Core-core repulsion = 20633.946543 eV Total energy + Delta-G solvation = -3569.175633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67312 -40.61039 -38.92776 -37.64888 -36.23147 -35.62849 -33.24704 -31.59281 -31.29066 -28.91409 -28.07879 -27.99167 -27.19328 -24.57536 -22.94643 -22.51831 -21.57680 -19.98836 -19.44971 -18.89357 -18.17998 -17.40734 -16.84240 -16.79973 -16.42266 -15.92021 -15.84421 -15.43790 -15.33368 -15.20618 -15.07213 -14.55591 -14.32130 -13.84485 -13.54553 -13.24905 -12.98908 -12.93893 -12.82103 -12.70874 -12.60227 -12.53185 -12.22417 -12.08273 -11.98294 -11.96699 -11.66705 -11.55351 -11.52258 -11.12066 -11.07652 -10.65315 -9.70982 -9.44508 -9.30732 -8.68088 -6.39510 0.25471 0.80030 0.98030 1.37898 1.42422 1.49444 1.52152 2.00943 2.19426 2.74436 3.00322 3.56220 3.65790 3.76023 3.94233 3.98567 4.24805 4.37122 4.52875 4.58839 4.63561 4.65715 4.85355 4.88347 4.88837 5.02231 5.05324 5.11935 5.12546 5.19219 5.25288 5.27999 5.38502 5.46499 5.50291 5.55700 5.66018 5.73540 5.83825 5.92630 6.02558 6.25310 6.47336 6.58149 6.84428 6.87850 6.90445 7.32861 8.28602 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.002780 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.172618 B =10069.686765 C =10810.250831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.050 4.050 3 C -0.137 4.137 4 C -0.154 4.154 5 C -0.119 4.119 6 C 0.511 3.489 7 O -0.557 6.557 8 N -0.522 5.522 9 N -0.519 5.519 10 C 0.567 3.433 11 O -0.576 6.576 12 C -0.130 4.130 13 C -0.203 4.203 14 C -0.093 4.093 15 C -0.213 4.213 16 C 0.068 3.932 17 C -0.494 4.494 18 H 0.086 0.914 19 C 0.031 3.969 20 N -0.822 5.822 21 Si 0.983 3.017 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.123 4.123 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.434 0.566 38 H 0.435 0.565 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.288 0.712 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 15.012 -10.165 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.211 4.211 5 C -0.159 4.159 6 C 0.300 3.700 7 O -0.434 6.434 8 N -0.271 5.271 9 N -0.268 5.268 10 C 0.358 3.642 11 O -0.456 6.456 12 C -0.134 4.134 13 C -0.223 4.223 14 C -0.111 4.111 15 C -0.233 4.233 16 C 0.066 3.934 17 C -0.523 4.523 18 H 0.104 0.896 19 C -0.185 4.185 20 N -0.448 5.448 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.144 4.144 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.277 0.723 38 H 0.280 0.720 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.512 15.213 -9.993 18.264 hybrid contribution 0.221 -0.587 0.809 1.024 sum 1.733 14.627 -9.184 17.357 Atomic orbital electron populations 1.22092 0.94932 1.02568 1.01566 1.20305 0.95731 0.95761 0.93243 1.21848 1.01582 0.93361 1.02635 1.22090 1.00613 1.01429 0.96987 1.21890 1.04183 0.87827 1.02034 1.21808 0.80087 0.88324 0.79809 1.90613 1.39252 1.77569 1.36014 1.45291 1.53468 1.00619 1.27678 1.44814 1.53621 1.01778 1.26560 1.18794 0.79407 0.85722 0.80321 1.90685 1.40289 1.77513 1.37098 1.19433 1.04028 0.91234 0.98718 1.20800 1.05126 0.97345 0.99036 1.20900 0.99068 0.93169 0.97957 1.21424 1.03488 1.00340 0.98078 1.17938 0.90022 0.92237 0.93219 1.19854 1.42450 0.95086 0.94906 0.89599 1.26853 0.93874 0.96583 1.01169 1.69865 1.34953 1.17292 1.22643 0.85233 0.79298 0.78721 0.76409 1.18463 1.19604 1.17750 1.21430 1.01280 0.94558 0.97148 0.92586 0.92583 0.92453 0.91522 0.92068 0.91594 0.92432 0.92599 0.92502 0.86130 0.86014 0.72327 0.72016 0.85511 0.84456 0.87061 0.90115 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.18 71.98 0.59 -2.23 16 2 C -0.05 -0.76 0.77 -52.18 -0.04 -0.80 16 3 C -0.14 -1.44 8.47 71.98 0.61 -0.83 16 4 C -0.15 -2.77 8.18 71.98 0.59 -2.19 16 5 C -0.12 -1.74 4.77 29.85 0.14 -1.60 16 6 C 0.51 12.07 7.36 87.66 0.65 12.72 16 7 O -0.56 -16.16 11.19 -3.04 -0.03 -16.19 16 8 N -0.52 -14.25 6.26 -173.53 -1.09 -15.34 16 9 N -0.52 -17.58 6.21 -175.58 -1.09 -18.67 16 10 C 0.57 24.33 7.89 86.80 0.68 25.02 16 11 O -0.58 -27.87 16.17 -3.85 -0.06 -27.93 16 12 C -0.13 -6.04 5.87 -20.13 -0.12 -6.16 16 13 C -0.20 -8.13 9.55 22.70 0.22 -7.92 16 14 C -0.09 -3.70 10.01 22.18 0.22 -3.48 16 15 C -0.21 -9.83 9.78 22.77 0.22 -9.61 16 16 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 17 C -0.49 -26.24 9.05 23.47 0.21 -26.03 16 18 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 19 C 0.03 1.56 5.14 85.25 0.44 2.00 16 20 N -0.82 -44.53 10.95 21.82 0.24 -44.29 16 21 Si 0.98 38.51 29.60 68.60 2.03 40.54 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 24 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 25 C -0.12 -6.68 8.23 23.01 0.19 -6.49 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.39 5.51 -2.39 -0.01 1.37 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 1.38 5.51 -2.38 -0.01 1.36 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.43 10.82 8.00 -213.33 -1.71 9.12 16 38 H 0.44 13.80 6.02 -213.32 -1.28 12.51 16 39 H 0.13 4.13 6.38 -2.91 -0.02 4.11 16 40 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 43 H 0.11 6.28 5.74 -2.91 -0.02 6.26 16 Total: -1.00 -66.57 353.27 2.53 -64.04 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -1.95 Total: 41.93 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 4.48 Total: -24.08 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.94 Total: -78.30 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.10 Total: -44.12 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -66.57 2.53 -64.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171482856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.436 kcal (2) G-P(sol) polarization free energy of solvation -66.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds