Wall clock time and date at job start Tue Mar 31 2020 09:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 119.99962 * 2 1 4 4 O 1.21286 * 120.00134 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00105 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47157 * 59.99627 * 5 3 2 7 7 C 1.53000 * 109.47205 * 299.99804 * 5 3 2 8 8 C 1.53006 * 109.47263 * 179.97438 * 5 3 2 9 9 N 1.46496 * 109.47119 * 179.97438 * 8 5 3 10 10 C 1.34777 * 120.00061 * 179.97438 * 9 8 5 11 11 O 1.21546 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.47881 * 120.00167 * 179.97438 * 10 9 8 13 13 C 1.39924 * 120.02537 * 359.73022 * 12 10 9 14 14 C 1.38331 * 120.35880 * 179.73915 * 13 12 10 15 15 C 1.37756 * 120.40917 * 0.55784 * 14 13 12 16 16 C 1.40748 * 120.03940 * 359.70017 * 15 14 13 17 17 C 1.41443 * 120.17618 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99396 * 24.43795 * 17 16 15 19 19 C 1.39929 * 120.00242 * 204.43097 * 17 16 15 20 20 N 1.30831 * 119.99625 * 17.89746 * 19 17 16 21 21 Si 1.86797 * 120.00296 * 197.89270 * 19 17 16 22 22 H 1.48498 * 109.47171 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47242 * 120.00091 * 21 19 17 24 24 H 1.48500 * 109.47099 * 240.00107 * 21 19 17 25 25 C 1.38989 * 120.02751 * 180.02562 * 12 10 9 26 26 H 1.08999 * 109.47139 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47158 * 300.00056 * 1 2 3 28 28 H 1.09003 * 109.46986 * 60.00254 * 1 2 3 29 29 H 0.96995 * 120.00516 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46684 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.46938 * 300.00106 * 6 5 3 32 32 H 1.09002 * 109.46633 * 60.00020 * 6 5 3 33 33 H 1.08998 * 109.47154 * 300.00049 * 7 5 3 34 34 H 1.08999 * 109.47231 * 59.99685 * 7 5 3 35 35 H 1.08998 * 109.47251 * 179.97438 * 7 5 3 36 36 H 1.08998 * 109.46644 * 299.99787 * 8 5 3 37 37 H 1.08994 * 109.47011 * 59.99481 * 8 5 3 38 38 H 0.97003 * 120.00114 * 359.97438 * 9 8 5 39 39 H 1.07997 * 119.81628 * 359.97438 * 13 12 10 40 40 H 1.07991 * 119.79376 * 180.28090 * 14 13 12 41 41 H 1.08000 * 119.97530 * 179.71778 * 15 14 13 42 42 H 0.97004 * 119.99702 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.20229 * 359.95694 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1554 0.4462 -1.2502 7 6 4.1564 0.4458 1.2483 8 6 4.1559 2.6098 -0.0011 9 7 5.6208 2.6098 -0.0011 10 6 6.2947 3.7770 -0.0020 11 8 5.6869 4.8296 -0.0024 12 6 7.7735 3.7770 -0.0014 13 6 8.4737 2.5656 0.0059 14 6 9.8570 2.5575 0.0011 15 6 10.5612 3.7415 0.0007 16 6 9.8741 4.9699 -0.0012 17 6 10.5943 6.1873 -0.0022 18 1 11.6024 6.2180 -0.3886 19 6 10.0006 7.3518 0.4972 20 7 8.9488 7.2698 1.2709 21 14 10.7099 9.0235 0.0594 22 1 11.8903 8.8446 -0.8237 23 1 9.6811 9.8281 -0.6474 24 1 11.1217 9.7270 1.3006 25 6 8.4690 4.9804 -0.0018 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 5.2455 0.4467 -1.2508 31 1 3.7921 -0.5815 -1.2502 32 1 3.7917 0.9602 -2.1399 33 1 3.7934 0.9594 2.1385 34 1 3.7930 -0.5819 1.2483 35 1 5.2463 0.4454 1.2477 36 1 3.7922 3.1234 -0.8911 37 1 3.7928 3.1238 0.8888 38 1 6.1058 1.7698 -0.0003 39 1 7.9311 1.6318 0.0115 40 1 10.3881 1.6173 0.0022 41 1 11.6411 3.7270 0.0015 42 1 8.5370 8.0771 1.6169 43 1 7.9328 5.9178 -0.0033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178995347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:05 Heat of formation + Delta-G solvation = -66.469858 kcal Electronic energy + Delta-G solvation = -24488.705314 eV Core-core repulsion = 20919.014952 eV Total energy + Delta-G solvation = -3569.690361 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.53189 -39.05891 -37.12069 -36.13538 -34.92167 -33.75939 -32.73707 -30.14667 -29.42253 -27.64620 -27.23721 -26.50025 -25.21677 -23.12353 -21.71708 -20.92029 -19.72583 -19.60628 -17.93621 -16.91233 -16.54558 -15.86189 -15.65602 -15.34595 -14.98256 -14.77452 -14.63538 -14.12085 -13.93249 -13.69860 -13.49209 -13.12641 -12.92747 -12.73758 -12.62139 -12.52993 -12.44765 -12.26208 -12.01957 -11.63199 -11.30519 -11.13817 -11.10946 -11.04256 -10.72310 -10.47308 -10.00566 -9.92913 -9.68101 -9.42455 -9.20800 -8.99087 -8.61023 -7.61852 -7.51342 -6.79076 -4.40361 2.23452 2.42405 2.81853 2.85184 3.09383 3.14266 3.16123 3.78010 3.90105 3.93921 4.30264 4.47448 4.58606 4.66440 4.78104 4.95536 5.18475 5.25940 5.43605 5.44861 5.46936 5.52273 5.61396 5.73036 5.81924 5.86035 6.00362 6.04353 6.07899 6.19340 6.26768 6.72788 6.87266 6.99886 7.02822 7.15379 7.22338 7.39138 7.70848 7.76893 7.93812 7.97150 8.11165 8.20644 8.51939 8.81433 8.84622 8.99680 10.15550 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.003025 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.020380 B = 9253.224373 C =10087.335081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.735 5.735 3 C 0.527 3.473 4 O -0.529 6.529 5 C -0.094 4.094 6 C -0.142 4.142 7 C -0.142 4.142 8 C 0.146 3.854 9 N -0.736 5.736 10 C 0.563 3.437 11 O -0.542 6.542 12 C -0.126 4.126 13 C -0.219 4.219 14 C -0.097 4.097 15 C -0.213 4.213 16 C 0.099 3.901 17 C -0.459 4.459 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.909 3.091 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.274 1.274 25 C -0.093 4.093 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.401 0.599 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.284 0.716 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 -16.545 -1.697 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.388 5.388 3 C 0.312 3.688 4 O -0.404 6.404 5 C -0.098 4.098 6 C -0.199 4.199 7 C -0.200 4.200 8 C 0.022 3.978 9 N -0.391 5.391 10 C 0.353 3.647 11 O -0.420 6.420 12 C -0.129 4.129 13 C -0.240 4.240 14 C -0.116 4.116 15 C -0.233 4.233 16 C 0.096 3.904 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.147 4.147 20 N -0.406 5.406 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.113 4.113 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.235 0.765 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.919 -14.849 -1.546 19.104 hybrid contribution 0.615 -0.202 -0.030 0.648 sum -11.304 -15.051 -1.577 18.889 Atomic orbital electron populations 1.21538 0.79581 1.02117 1.02469 1.45764 1.07668 1.08719 1.76607 1.20389 0.89447 0.83605 0.75337 1.90752 1.70201 1.31213 1.48255 1.21005 0.91853 0.98347 0.98584 1.21893 1.02553 0.99595 0.95892 1.21891 1.02564 0.99583 0.95921 1.20948 0.80610 0.92748 1.03510 1.45968 1.05899 1.09279 1.77991 1.18835 0.88404 0.82676 0.74769 1.90716 1.70377 1.31358 1.49510 1.19464 0.89982 0.95309 1.08182 1.20299 0.94038 0.94538 1.15082 1.20422 0.93617 0.96597 1.00926 1.21087 0.97915 0.92418 1.11887 1.17611 0.91538 0.92530 0.88725 1.19620 1.01119 0.92171 1.35863 0.90035 1.25975 0.94314 1.01703 0.92680 1.69800 1.17653 1.31660 1.21454 0.86239 0.80038 0.81048 0.79315 1.18343 1.19536 1.19918 1.21650 0.94124 0.96302 0.99193 0.90704 0.92185 0.92183 0.76480 0.90764 0.91968 0.91596 0.91561 0.91973 0.90758 0.91012 0.90989 0.76681 0.89415 0.88952 0.88652 0.90444 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.84 0.64 1.22 16 2 N -0.74 -5.66 5.50 -67.08 -0.37 -6.03 16 3 C 0.53 6.16 6.48 -10.99 -0.07 6.09 16 4 O -0.53 -8.63 15.98 5.55 0.09 -8.54 16 5 C -0.09 -1.00 0.63 -155.65 -0.10 -1.10 16 6 C -0.14 -1.20 8.20 37.16 0.30 -0.90 16 7 C -0.14 -1.23 8.20 37.16 0.30 -0.92 16 8 C 0.15 2.25 3.85 -4.04 -0.02 2.24 16 9 N -0.74 -12.20 4.91 -61.24 -0.30 -12.50 16 10 C 0.56 12.55 7.77 -12.31 -0.10 12.45 16 11 O -0.54 -14.15 16.33 5.33 0.09 -14.07 16 12 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 13 C -0.22 -4.53 9.55 -38.92 -0.37 -4.90 16 14 C -0.10 -2.04 10.01 -39.72 -0.40 -2.44 16 15 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 16 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 17 C -0.46 -12.10 9.05 -37.73 -0.34 -12.44 16 18 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 19 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 20 N -0.78 -20.93 10.95 55.55 0.61 -20.33 16 21 Si 0.91 18.95 29.60 -169.99 -5.03 13.92 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.09 -2.49 8.24 -38.45 -0.32 -2.81 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.40 1.87 7.66 -40.82 -0.31 1.56 16 30 H 0.07 0.63 6.86 -51.93 -0.36 0.27 16 31 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 35 H 0.07 0.64 6.86 -51.93 -0.36 0.29 16 36 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.40 5.46 4.18 -40.82 -0.17 5.29 16 39 H 0.09 1.46 6.38 -52.49 -0.33 1.12 16 40 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 43 H 0.13 3.91 5.74 -52.49 -0.30 3.61 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -33.34 355.67 -7.66 -41.00 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.97 Total: 9.93 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.14 Total: -8.75 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: -0.06 Total: -38.85 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.18 Total: -22.61 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.34 -7.66 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178995347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.472 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds