Wall clock time and date at job start Tue Mar 31 2020 09:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 119.99962 * 2 1 4 4 O 1.21286 * 120.00134 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00105 * 180.02562 * 3 2 1 6 6 C 1.53007 * 109.47157 * 59.99627 * 5 3 2 7 7 C 1.53000 * 109.47205 * 299.99804 * 5 3 2 8 8 C 1.53006 * 109.47263 * 179.97438 * 5 3 2 9 9 N 1.46496 * 109.47119 * 179.97438 * 8 5 3 10 10 C 1.34777 * 120.00061 * 179.97438 * 9 8 5 11 11 O 1.21546 * 119.99729 * 0.02562 * 10 9 8 12 12 C 1.47881 * 120.00167 * 179.97438 * 10 9 8 13 13 C 1.39924 * 120.02537 * 359.73022 * 12 10 9 14 14 C 1.38331 * 120.35880 * 179.73915 * 13 12 10 15 15 C 1.37756 * 120.40917 * 0.55784 * 14 13 12 16 16 C 1.40748 * 120.03940 * 359.70017 * 15 14 13 17 17 C 1.41443 * 120.17618 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99396 * 24.43795 * 17 16 15 19 19 C 1.39929 * 120.00242 * 204.43097 * 17 16 15 20 20 N 1.30831 * 119.99625 * 17.89746 * 19 17 16 21 21 Si 1.86797 * 120.00296 * 197.89270 * 19 17 16 22 22 H 1.48498 * 109.47171 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47242 * 120.00091 * 21 19 17 24 24 H 1.48500 * 109.47099 * 240.00107 * 21 19 17 25 25 C 1.38989 * 120.02751 * 180.02562 * 12 10 9 26 26 H 1.08999 * 109.47139 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47158 * 300.00056 * 1 2 3 28 28 H 1.09003 * 109.46986 * 60.00254 * 1 2 3 29 29 H 0.96995 * 120.00516 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46684 * 179.97438 * 6 5 3 31 31 H 1.08999 * 109.46938 * 300.00106 * 6 5 3 32 32 H 1.09002 * 109.46633 * 60.00020 * 6 5 3 33 33 H 1.08998 * 109.47154 * 300.00049 * 7 5 3 34 34 H 1.08999 * 109.47231 * 59.99685 * 7 5 3 35 35 H 1.08998 * 109.47251 * 179.97438 * 7 5 3 36 36 H 1.08998 * 109.46644 * 299.99787 * 8 5 3 37 37 H 1.08994 * 109.47011 * 59.99481 * 8 5 3 38 38 H 0.97003 * 120.00114 * 359.97438 * 9 8 5 39 39 H 1.07997 * 119.81628 * 359.97438 * 13 12 10 40 40 H 1.07991 * 119.79376 * 180.28090 * 14 13 12 41 41 H 1.08000 * 119.97530 * 179.71778 * 15 14 13 42 42 H 0.97004 * 119.99702 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.20229 * 359.95694 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1554 0.4462 -1.2502 7 6 4.1564 0.4458 1.2483 8 6 4.1559 2.6098 -0.0011 9 7 5.6208 2.6098 -0.0011 10 6 6.2947 3.7770 -0.0020 11 8 5.6869 4.8296 -0.0024 12 6 7.7735 3.7770 -0.0014 13 6 8.4737 2.5656 0.0059 14 6 9.8570 2.5575 0.0011 15 6 10.5612 3.7415 0.0007 16 6 9.8741 4.9699 -0.0012 17 6 10.5943 6.1873 -0.0022 18 1 11.6024 6.2180 -0.3886 19 6 10.0006 7.3518 0.4972 20 7 8.9488 7.2698 1.2709 21 14 10.7099 9.0235 0.0594 22 1 11.8903 8.8446 -0.8237 23 1 9.6811 9.8281 -0.6474 24 1 11.1217 9.7270 1.3006 25 6 8.4690 4.9804 -0.0018 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 5.2455 0.4467 -1.2508 31 1 3.7921 -0.5815 -1.2502 32 1 3.7917 0.9602 -2.1399 33 1 3.7934 0.9594 2.1385 34 1 3.7930 -0.5819 1.2483 35 1 5.2463 0.4454 1.2477 36 1 3.7922 3.1234 -0.8911 37 1 3.7928 3.1238 0.8888 38 1 6.1058 1.7698 -0.0003 39 1 7.9311 1.6318 0.0115 40 1 10.3881 1.6173 0.0022 41 1 11.6411 3.7270 0.0015 42 1 8.5370 8.0771 1.6169 43 1 7.9328 5.9178 -0.0033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178995347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:04 Heat of formation + Delta-G solvation = -90.644533 kcal Electronic energy + Delta-G solvation = -24489.753606 eV Core-core repulsion = 20919.014952 eV Total energy + Delta-G solvation = -3570.738654 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58935 -40.66855 -38.85908 -37.41678 -35.77920 -35.61157 -34.15255 -31.93625 -31.26111 -28.31759 -28.11702 -27.65052 -27.01576 -24.50338 -23.03654 -22.71171 -21.32789 -20.60762 -19.63999 -18.18766 -17.81623 -17.10183 -16.93308 -16.66248 -16.60282 -16.32265 -16.08113 -15.43128 -15.13996 -14.84406 -14.79952 -14.61765 -14.32571 -14.25497 -13.87906 -13.48186 -13.25365 -13.23448 -13.11752 -12.96929 -12.86438 -12.78841 -12.53344 -12.19090 -12.14154 -11.99353 -11.90241 -11.49201 -11.08272 -10.93896 -10.77581 -10.24207 -10.14465 -9.46753 -9.37221 -8.66749 -6.37761 0.38171 1.01280 1.35660 1.46510 1.52079 1.52604 1.92300 2.09307 2.18778 2.46724 2.78791 3.36429 3.69784 3.70211 3.74532 4.00383 4.02436 4.43611 4.47298 4.52239 4.60758 4.61835 4.64845 4.71380 4.81407 4.82473 4.90267 4.93854 4.95640 5.09321 5.20097 5.21784 5.26946 5.31984 5.37710 5.39675 5.52680 5.87487 5.93178 6.06737 6.29675 6.46989 6.51843 6.68652 6.88329 6.95853 7.18816 7.29847 8.29981 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.003025 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.020380 B = 9253.224373 C =10087.335081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.713 5.713 3 C 0.522 3.478 4 O -0.588 6.588 5 C -0.083 4.083 6 C -0.141 4.141 7 C -0.142 4.142 8 C 0.147 3.853 9 N -0.703 5.703 10 C 0.558 3.442 11 O -0.593 6.593 12 C -0.137 4.137 13 C -0.193 4.193 14 C -0.094 4.094 15 C -0.215 4.215 16 C 0.066 3.934 17 C -0.496 4.496 18 H 0.085 0.915 19 C 0.027 3.973 20 N -0.826 5.826 21 Si 0.982 3.018 22 H -0.249 1.249 23 H -0.273 1.273 24 H -0.264 1.264 25 C -0.134 4.134 26 H 0.117 0.883 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.421 0.579 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.415 0.585 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.109 0.891 42 H 0.285 0.715 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 -21.209 -2.062 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.365 5.365 3 C 0.308 3.692 4 O -0.468 6.468 5 C -0.087 4.087 6 C -0.198 4.198 7 C -0.199 4.199 8 C 0.023 3.977 9 N -0.358 5.358 10 C 0.348 3.652 11 O -0.474 6.474 12 C -0.140 4.140 13 C -0.213 4.213 14 C -0.111 4.111 15 C -0.235 4.235 16 C 0.064 3.936 17 C -0.526 4.526 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.452 5.452 21 Si 0.802 3.198 22 H -0.172 1.172 23 H -0.198 1.198 24 H -0.188 1.188 25 C -0.154 4.154 26 H 0.135 0.865 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.259 0.741 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.255 0.745 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.324 -19.648 -1.913 22.758 hybrid contribution 0.335 0.975 0.071 1.034 sum -10.989 -18.673 -1.842 21.744 Atomic orbital electron populations 1.21702 0.78694 1.04487 1.01282 1.45617 1.08267 1.08272 1.74382 1.20611 0.89891 0.83880 0.74791 1.90739 1.71254 1.33492 1.51276 1.20912 0.91314 0.95143 1.01297 1.21957 1.02949 1.01275 0.93652 1.21956 1.02923 1.01296 0.93725 1.20928 0.79392 0.96383 1.01024 1.45624 1.06447 1.08267 1.75482 1.18858 0.88294 0.83430 0.74659 1.90693 1.71128 1.33610 1.52012 1.19726 0.90796 0.95700 1.07816 1.20860 0.94435 0.95096 1.10900 1.20949 0.93845 0.97578 0.98768 1.21428 0.98924 0.92483 1.10683 1.17953 0.91684 0.94107 0.89897 1.19889 1.01677 0.93360 1.37625 0.89694 1.26872 0.94448 1.05430 0.91981 1.69908 1.19545 1.32512 1.23239 0.85163 0.79265 0.76016 0.79322 1.17222 1.19816 1.18837 1.21446 0.94704 0.96288 1.03011 0.86463 0.93485 0.93417 0.74135 0.90058 0.87933 0.93009 0.93166 0.87897 0.90113 0.93502 0.93778 0.74473 0.84114 0.83904 0.87253 0.90436 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.70 127.77 1.37 2.28 16 2 N -0.71 -8.86 5.50 -484.52 -2.66 -11.53 16 3 C 0.52 11.64 6.48 87.66 0.57 12.21 16 4 O -0.59 -19.89 15.98 -3.05 -0.05 -19.94 16 5 C -0.08 -1.60 0.63 -52.92 -0.03 -1.63 16 6 C -0.14 -1.85 8.20 71.98 0.59 -1.26 16 7 C -0.14 -1.93 8.20 71.98 0.59 -1.34 16 8 C 0.15 4.63 3.85 86.38 0.33 4.96 16 9 N -0.70 -22.67 4.91 -465.95 -2.29 -24.96 16 10 C 0.56 25.48 7.77 86.80 0.67 26.16 16 11 O -0.59 -33.10 16.33 -3.86 -0.06 -33.16 16 12 C -0.14 -6.52 5.87 -20.14 -0.12 -6.64 16 13 C -0.19 -7.28 9.55 22.70 0.22 -7.06 16 14 C -0.09 -3.55 10.01 22.18 0.22 -3.33 16 15 C -0.22 -9.91 9.78 22.77 0.22 -9.69 16 16 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 17 C -0.50 -27.33 9.05 23.47 0.21 -27.12 16 18 H 0.08 4.40 7.91 -2.91 -0.02 4.38 16 19 C 0.03 1.46 5.14 85.25 0.44 1.90 16 20 N -0.83 -47.39 10.95 21.82 0.24 -47.15 16 21 Si 0.98 40.62 29.60 68.60 2.03 42.65 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 25 C -0.13 -7.57 8.24 23.01 0.19 -7.38 16 26 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.42 1.84 7.66 -92.71 -0.71 1.13 16 30 H 0.08 0.98 6.86 -2.38 -0.02 0.96 16 31 H 0.10 0.56 7.57 -2.39 -0.02 0.54 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.59 7.56 -2.39 -0.02 0.58 16 35 H 0.08 1.02 6.86 -2.39 -0.02 1.00 16 36 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 37 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 38 H 0.41 9.93 4.18 -92.71 -0.39 9.55 16 39 H 0.14 3.76 6.38 -2.91 -0.02 3.74 16 40 H 0.14 4.06 8.06 -2.92 -0.02 4.04 16 41 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 42 H 0.29 15.13 8.30 -92.71 -0.77 14.36 16 43 H 0.10 6.06 5.74 -2.91 -0.02 6.04 16 Total: -1.00 -82.74 355.67 2.50 -80.24 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.06 Total: 28.31 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 5.35 Total: -14.47 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -4.71 Total: -83.64 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.11 Total: -53.10 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -82.74 2.50 -80.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178995347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.410 kcal (2) G-P(sol) polarization free energy of solvation -82.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds