Wall clock time and date at job start Tue Mar 31 2020 09:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00219 * 2 1 4 4 C 1.50698 * 119.99550 * 179.97438 * 2 1 3 5 5 N 1.46507 * 109.47121 * 95.00293 * 4 2 1 6 6 C 1.46495 * 119.99651 * 270.00125 * 5 4 2 7 7 C 1.34780 * 120.00323 * 89.99603 * 5 4 2 8 8 O 1.21584 * 119.99515 * 359.97438 * 7 5 4 9 9 N 1.34769 * 119.99947 * 180.02562 * 7 5 4 10 10 C 1.46505 * 119.99695 * 180.02562 * 9 7 5 11 11 C 1.50699 * 109.46837 * 180.02562 * 10 9 7 12 12 C 1.38305 * 119.93408 * 89.99748 * 11 10 9 13 13 C 1.38101 * 120.07071 * 179.97438 * 12 11 10 14 14 C 1.38876 * 119.92956 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06861 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53840 * 15 14 13 17 17 H 1.08003 * 120.00029 * 354.94359 * 16 15 14 18 18 C 1.38659 * 120.00122 * 174.94542 * 16 15 14 19 19 N 1.31558 * 119.99705 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00035 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47181 * 89.99980 * 20 18 16 22 22 H 1.48498 * 109.47260 * 210.00361 * 20 18 16 23 23 H 1.48502 * 109.47130 * 330.00179 * 20 18 16 24 24 C 1.38880 * 119.86555 * 0.27954 * 14 13 12 25 25 C 1.38102 * 119.92551 * 359.44514 * 24 14 13 26 26 H 1.07990 * 120.00210 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99165 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47012 * 269.99691 * 3 2 1 29 29 H 1.08995 * 109.47376 * 30.00086 * 3 2 1 30 30 H 1.09003 * 109.46913 * 150.00586 * 3 2 1 31 31 H 1.09003 * 109.47636 * 335.00136 * 4 2 1 32 32 H 1.08999 * 109.47209 * 214.99585 * 4 2 1 33 33 H 1.09005 * 109.47120 * 269.99334 * 6 5 4 34 34 H 1.09004 * 109.47669 * 29.99728 * 6 5 4 35 35 H 1.09003 * 109.47274 * 149.99990 * 6 5 4 36 36 H 0.96998 * 120.00328 * 0.02562 * 9 7 5 37 37 H 1.08986 * 109.47314 * 59.99652 * 10 9 7 38 38 H 1.09005 * 109.46923 * 299.99397 * 10 9 7 39 39 H 1.07999 * 119.96326 * 0.02562 * 12 11 10 40 40 H 1.07997 * 120.03156 * 180.02562 * 13 12 11 41 41 H 0.96997 * 119.99350 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.04097 * 179.72435 * 24 14 13 43 43 H 1.07997 * 119.96688 * 180.27743 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.4119 -1.6685 -1.3753 6 6 1.4914 -2.4820 -2.1734 7 6 3.5792 -1.2542 -1.9067 8 8 4.3427 -0.5786 -1.2444 9 7 3.8994 -1.5881 -3.1725 10 6 5.1685 -1.1382 -3.7499 11 6 5.2826 -1.6417 -5.1657 12 6 4.8007 -0.8757 -6.2116 13 6 4.9043 -1.3341 -7.5101 14 6 5.4927 -2.5660 -7.7652 15 8 5.5964 -3.0191 -9.0406 16 6 5.2142 -2.1775 -10.0223 17 1 4.7699 -1.2249 -9.7742 18 6 5.3916 -2.5351 -11.3502 19 7 5.0191 -1.7136 -12.3079 20 14 6.1607 -4.1824 -11.7791 21 1 5.0948 -5.2089 -11.9035 22 1 6.8902 -4.0677 -13.0675 23 1 7.1084 -4.5803 -10.7074 24 6 5.9699 -3.3357 -6.7124 25 6 5.8685 -2.8692 -5.4165 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5399 0.9354 0.0004 28 1 2.2453 1.6197 -1.0276 29 1 1.4746 2.0647 0.5138 30 1 3.0160 1.1746 0.5138 31 1 1.4385 -2.0853 0.4352 32 1 2.9741 -1.1987 0.5899 33 1 1.7217 -3.5377 -2.0299 34 1 0.4666 -2.2874 -1.8571 35 1 1.6011 -2.2264 -3.2274 36 1 3.2897 -2.1262 -3.7013 37 1 5.9958 -1.5283 -3.1573 38 1 5.2024 -0.0487 -3.7483 39 1 4.3437 0.0824 -6.0126 40 1 4.5282 -0.7353 -8.3264 41 1 5.1435 -1.9637 -13.2368 42 1 6.4239 -4.2961 -6.9071 43 1 6.2434 -3.4652 -4.5977 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180955053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:57 Heat of formation + Delta-G solvation = -6.986694 kcal Electronic energy + Delta-G solvation = -23877.930981 eV Core-core repulsion = 20310.820003 eV Total energy + Delta-G solvation = -3567.110978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29393 -39.28429 -37.29999 -36.58494 -34.73530 -34.06131 -32.47424 -30.40708 -30.07374 -27.90962 -27.52922 -26.47053 -25.42524 -24.12743 -22.18910 -20.66027 -20.27815 -18.90961 -18.13342 -17.96560 -17.33656 -16.54190 -16.01718 -15.10024 -14.97083 -14.79923 -14.44722 -14.29938 -14.07318 -13.88685 -13.75660 -13.50881 -13.34067 -13.18971 -12.82149 -12.70171 -12.62736 -12.27144 -12.03342 -11.88913 -11.79032 -11.49516 -11.43047 -10.94755 -10.86612 -10.76594 -10.22835 -10.18578 -9.49390 -9.40377 -9.09648 -8.96352 -8.65102 -8.38571 -7.49242 -6.50861 -4.17902 1.74585 1.98566 2.01954 2.87782 3.16921 3.19503 3.20608 3.33789 3.96146 4.15762 4.43132 4.59603 4.62966 4.73052 4.83415 5.01900 5.07470 5.16839 5.18300 5.36899 5.40344 5.40671 5.50667 5.56387 5.58756 5.67649 5.74497 5.86088 5.89341 6.02258 6.24426 6.25032 6.32252 6.44845 6.56548 6.60591 6.67250 6.81201 6.93684 7.12440 7.18561 7.49145 7.69700 7.92602 7.94172 8.58958 8.83686 9.44372 10.56345 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.028494 B = 0.002468 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.440625 B =11340.238844 C =11515.627855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 C -0.112 4.112 4 C 0.166 3.834 5 N -0.632 5.632 6 C 0.079 3.921 7 C 0.703 3.297 8 O -0.591 6.591 9 N -0.738 5.738 10 C 0.196 3.804 11 C -0.205 4.205 12 C -0.052 4.052 13 C -0.224 4.224 14 C 0.167 3.833 15 O -0.213 6.213 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.064 3.936 19 N -0.876 5.876 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.195 4.195 25 C -0.055 4.055 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.281 0.719 42 H 0.118 0.882 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 -0.691 21.078 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.137 4.137 3 C -0.169 4.169 4 C 0.043 3.957 5 N -0.369 5.369 6 C -0.065 4.065 7 C 0.404 3.596 8 O -0.469 6.469 9 N -0.394 5.394 10 C 0.073 3.927 11 C -0.207 4.207 12 C -0.071 4.071 13 C -0.243 4.243 14 C 0.114 3.886 15 O -0.117 6.117 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.513 5.513 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.215 4.215 25 C -0.074 4.074 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.890 -0.376 21.187 22.282 hybrid contribution -0.256 -0.770 -0.839 1.167 sum -7.146 -1.146 20.348 21.597 Atomic orbital electron populations 1.23707 0.95105 1.01772 1.02084 1.22232 0.95504 0.96780 0.99151 1.20780 1.00150 0.93736 1.02253 1.20331 0.99958 0.93125 0.82248 1.47031 1.19074 1.56224 1.14582 1.21729 0.94014 0.94913 0.95839 1.15946 0.81460 0.80150 0.82008 1.90891 1.51117 1.43729 1.61169 1.45629 1.23153 1.58042 1.12624 1.19838 0.84246 0.98634 0.90002 1.19308 1.09996 0.97786 0.93594 1.20708 0.96409 0.98051 0.91893 1.21279 1.07402 0.98341 0.97317 1.19182 0.92452 0.91913 0.85094 1.83571 1.74764 1.41757 1.11635 1.20791 1.40886 1.00869 0.84152 0.87500 1.24492 0.96291 0.99168 0.94002 1.69644 1.45196 1.36088 1.00347 0.86169 0.80071 0.82409 0.78207 1.19814 1.20706 1.18298 1.20212 1.08558 1.01643 0.91045 1.20543 0.97020 0.94568 0.95302 0.88617 0.88469 0.91702 0.92423 0.91261 0.90205 0.89175 0.92528 0.90954 0.91253 0.76723 0.91639 0.91680 0.87124 0.84808 0.90902 0.86374 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 13.89 29.01 0.40 -1.04 16 2 C -0.14 -1.24 5.63 -101.07 -0.57 -1.81 16 3 C -0.11 -1.12 9.97 36.01 0.36 -0.76 16 4 C 0.17 1.53 5.56 -5.19 -0.03 1.50 16 5 N -0.63 -6.56 2.86 -188.74 -0.54 -7.10 16 6 C 0.08 0.59 10.20 59.84 0.61 1.20 16 7 C 0.70 9.50 8.28 -86.92 -0.72 8.78 16 8 O -0.59 -9.85 15.86 5.29 0.08 -9.76 16 9 N -0.74 -9.30 5.41 -66.42 -0.36 -9.66 16 10 C 0.20 2.70 5.80 -5.19 -0.03 2.67 16 11 C -0.21 -3.15 5.25 -104.57 -0.55 -3.70 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 14 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 15 O -0.21 -5.40 8.59 0.05 0.00 -5.40 16 16 C -0.39 -10.67 9.95 30.89 0.31 -10.36 16 17 H 0.11 2.97 5.44 -52.48 -0.29 2.69 16 18 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 19 N -0.88 -24.68 13.96 55.48 0.77 -23.90 16 20 Si 0.91 21.05 28.62 -169.99 -4.86 16.18 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 24 C -0.20 -3.62 9.99 -39.39 -0.39 -4.01 16 25 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 26 H 0.10 0.60 7.99 -52.49 -0.42 0.18 16 27 H 0.10 0.69 8.04 -52.48 -0.42 0.27 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 30 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 32 H 0.09 0.95 7.38 -51.93 -0.38 0.57 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 35 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16 36 H 0.40 4.46 6.19 -40.82 -0.25 4.20 16 37 H 0.07 0.91 8.08 -51.94 -0.42 0.49 16 38 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 41 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 43 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -30.39 365.94 -7.63 -38.02 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.15 Total: 6.03 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.10 Total: -9.92 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.12 Total: -40.66 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.08 Total: -15.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.39 -7.63 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180955053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.030 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds