Wall clock time and date at job start Tue Mar 31 2020 09:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.50703 * 120.00097 * 2 1 4 4 C 1.31004 * 120.00450 * 179.97438 * 2 1 3 5 5 C 1.50703 * 119.99489 * 353.64363 * 4 2 1 6 6 N 1.46502 * 109.46630 * 233.97007 * 5 4 2 7 7 C 1.34784 * 119.99728 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99939 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99581 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99750 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47128 * 180.02562 * 10 9 7 12 12 C 1.38303 * 119.93402 * 90.00045 * 11 10 9 13 13 C 1.38094 * 120.07543 * 179.97438 * 12 11 10 14 14 C 1.38885 * 119.92755 * 0.02751 * 13 12 11 15 15 O 1.35753 * 120.06641 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00134 * 5.49105 * 15 14 13 17 17 H 1.07998 * 119.99868 * 5.34439 * 16 15 14 18 18 C 1.38659 * 119.99877 * 185.33959 * 16 15 14 19 19 N 1.31548 * 120.00187 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99868 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47094 * 60.00412 * 20 18 16 22 22 H 1.48495 * 109.47022 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47299 * 300.00441 * 20 18 16 24 24 C 1.38878 * 119.86304 * 0.26714 * 14 13 12 25 25 C 1.38103 * 119.92738 * 359.45595 * 24 14 13 26 26 H 1.09003 * 109.46986 * 265.70098 * 1 2 3 27 27 H 1.09005 * 109.47407 * 25.69820 * 1 2 3 28 28 H 1.08996 * 109.47417 * 145.70119 * 1 2 3 29 29 H 1.09002 * 109.46703 * 269.99738 * 3 2 1 30 30 H 1.09002 * 109.46982 * 29.99238 * 3 2 1 31 31 H 1.08995 * 109.47604 * 149.99917 * 3 2 1 32 32 H 1.07993 * 120.00263 * 173.63509 * 4 2 1 33 33 H 1.08996 * 109.47441 * 113.96769 * 5 4 2 34 34 H 1.09005 * 109.47330 * 353.96692 * 5 4 2 35 35 H 0.96995 * 120.00526 * 359.97438 * 6 5 4 36 36 H 0.96995 * 120.00673 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47110 * 60.00105 * 10 9 7 38 38 H 1.08997 * 109.46685 * 300.00159 * 10 9 7 39 39 H 1.08001 * 119.96022 * 359.97438 * 12 11 10 40 40 H 1.07997 * 120.03489 * 179.97438 * 13 12 11 41 41 H 0.96997 * 120.00792 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.03657 * 179.72966 * 24 14 13 43 43 H 1.08002 * 119.96724 * 180.27002 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4154 -2.4355 0.1456 6 7 1.9821 -3.2022 1.2580 7 6 1.4702 -4.4080 1.5752 8 8 0.5384 -4.8596 0.9379 9 7 1.9919 -5.1135 2.5982 10 6 1.4351 -6.4239 2.9434 11 6 2.1905 -6.9980 4.1141 12 6 1.7672 -6.7355 5.4043 13 6 2.4569 -7.2606 6.4793 14 6 3.5772 -8.0526 6.2637 15 8 4.2571 -8.5707 7.3184 16 6 3.7291 -8.3740 8.5433 17 1 2.7634 -7.9014 8.6455 18 6 4.4259 -8.7786 9.6717 19 7 5.6024 -9.3539 9.5472 20 14 3.6941 -8.5068 11.3687 21 1 2.3987 -9.2257 11.4701 22 1 4.6295 -9.0235 12.3997 23 1 3.4724 -7.0544 11.5854 24 6 4.0034 -8.3095 4.9671 25 6 3.3059 -7.7861 3.8962 26 1 -0.3633 -0.0770 1.0248 27 1 -0.3634 0.9260 -0.4456 28 1 -0.3634 -0.8489 -0.5791 29 1 2.4421 1.6197 -1.0277 30 1 1.6713 2.0648 0.5137 31 1 3.2128 1.1749 0.5138 32 1 3.2370 -1.1374 -0.1032 33 1 1.5058 -3.0110 -0.7756 34 1 0.3634 -2.2306 0.3443 35 1 2.7262 -2.8424 1.7657 36 1 2.7359 -4.7537 3.1059 37 1 1.5255 -7.0938 2.0883 38 1 0.3837 -6.3134 3.2088 39 1 0.8962 -6.1191 5.5713 40 1 2.1261 -7.0548 7.4865 41 1 6.0900 -9.6366 10.3366 42 1 4.8767 -8.9214 4.7964 43 1 3.6342 -7.9890 2.8875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188482360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:26 Heat of formation + Delta-G solvation = -26.848744 kcal Electronic energy + Delta-G solvation = -23026.872349 eV Core-core repulsion = 19458.900088 eV Total energy + Delta-G solvation = -3567.972261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.98269 -39.08391 -37.45201 -36.80399 -34.37139 -34.20452 -32.36845 -30.31996 -30.15449 -28.84738 -28.09644 -25.89912 -24.87900 -23.71741 -22.04390 -20.90590 -20.61244 -18.95806 -18.07940 -17.79561 -17.04053 -16.49308 -15.84386 -15.09523 -14.87809 -14.73666 -14.60256 -14.45827 -14.25436 -13.95366 -13.69548 -13.63579 -13.43402 -13.02498 -12.81113 -12.77291 -12.56961 -12.34211 -12.05716 -11.91713 -11.67348 -11.38745 -11.24086 -10.95750 -10.79596 -10.67193 -10.49753 -10.21801 -9.45799 -9.40381 -9.09556 -8.90873 -8.68970 -8.27857 -7.32860 -6.53218 -4.12056 1.57985 2.07206 2.13593 3.01063 3.08970 3.11523 3.12665 3.28310 3.90266 4.32419 4.36007 4.52908 4.59483 4.87823 5.03150 5.09590 5.13526 5.15059 5.19112 5.25971 5.34606 5.45179 5.46514 5.52090 5.61214 5.67384 5.68085 5.83517 5.95592 6.13102 6.22739 6.31189 6.36335 6.53035 6.59170 6.63575 6.80973 6.91760 7.01219 7.16155 7.28475 7.35054 7.72093 7.91361 8.08201 8.65978 8.92002 9.60395 10.64228 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021274 B = 0.002141 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.873733 B =13072.247034 C =13670.069715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 C -0.120 4.120 4 C -0.190 4.190 5 C 0.166 3.834 6 N -0.746 5.746 7 C 0.700 3.300 8 O -0.598 6.598 9 N -0.738 5.738 10 C 0.198 3.802 11 C -0.214 4.214 12 C -0.050 4.050 13 C -0.237 4.237 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.196 4.196 25 C -0.054 4.054 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.396 0.604 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.272 0.728 42 H 0.118 0.882 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 16.803 -15.149 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.108 4.108 3 C -0.177 4.177 4 C -0.208 4.208 5 C 0.043 3.957 6 N -0.402 5.402 7 C 0.400 3.600 8 O -0.477 6.477 9 N -0.393 5.393 10 C 0.075 3.925 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.256 4.256 14 C 0.105 3.895 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.215 4.215 25 C -0.072 4.072 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.230 0.770 36 H 0.231 0.769 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.481 16.111 -15.555 23.313 hybrid contribution 0.445 0.512 1.380 1.538 sum -6.036 16.623 -14.175 22.665 Atomic orbital electron populations 1.20971 0.92160 1.02694 1.02623 1.21730 0.96043 0.95035 0.97976 1.20878 0.99820 0.94771 1.02223 1.22677 1.00028 0.93252 1.04855 1.20145 0.97009 0.89229 0.89343 1.45095 1.39158 1.19143 1.36853 1.16025 0.82430 0.80440 0.81067 1.90902 1.31005 1.70854 1.54980 1.45504 1.38491 1.20938 1.34362 1.19823 0.96070 0.81644 0.94958 1.19228 1.01111 1.07724 0.93464 1.20652 0.97675 0.96877 0.91704 1.21163 0.99750 1.05186 0.99544 1.19457 0.90650 0.90520 0.88845 1.83991 1.45552 1.64748 1.13283 1.21299 1.03702 1.41999 0.79930 0.89006 1.25318 0.95562 0.96170 0.99428 1.70018 1.12073 1.36413 1.30859 0.85764 0.78718 0.79059 0.79825 1.19404 1.20221 1.19455 1.20208 1.03680 1.07667 0.89979 1.20542 0.93736 0.95555 0.97411 0.91064 0.91669 0.91111 0.91353 0.91509 0.91640 0.86671 0.91325 0.90864 0.77037 0.76898 0.91741 0.91804 0.87389 0.85439 0.91823 0.86394 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 8.92 36.00 0.32 -0.49 16 2 C -0.11 -0.72 6.05 -101.07 -0.61 -1.33 16 3 C -0.12 -0.63 10.01 36.01 0.36 -0.27 16 4 C -0.19 -1.40 9.21 -36.03 -0.33 -1.73 16 5 C 0.17 1.59 5.70 -5.19 -0.03 1.56 16 6 N -0.75 -7.75 5.55 -66.41 -0.37 -8.12 16 7 C 0.70 9.77 8.57 -86.92 -0.74 9.02 16 8 O -0.60 -10.67 16.34 5.29 0.09 -10.58 16 9 N -0.74 -9.53 5.55 -66.41 -0.37 -9.90 16 10 C 0.20 2.85 5.80 -5.19 -0.03 2.82 16 11 C -0.21 -3.44 5.25 -104.58 -0.55 -3.99 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.24 -4.91 9.13 -39.39 -0.36 -5.27 16 14 C 0.16 3.71 6.65 -39.10 -0.26 3.45 16 15 O -0.17 -4.80 9.76 0.04 0.00 -4.80 16 16 C -0.39 -10.68 9.44 30.89 0.29 -10.39 16 17 H 0.09 2.30 5.29 -52.49 -0.28 2.02 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 20 Si 0.94 20.00 29.55 -169.99 -5.02 14.97 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.20 -3.94 9.99 -39.39 -0.39 -4.34 16 25 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 28 H 0.07 0.47 6.66 -51.93 -0.35 0.13 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.06 0.33 8.06 -51.93 -0.42 -0.09 16 32 H 0.12 0.75 8.05 -52.49 -0.42 0.32 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.75 5.77 -51.93 -0.30 0.45 16 35 H 0.40 3.17 8.48 -40.82 -0.35 2.83 16 36 H 0.40 4.48 8.48 -40.82 -0.35 4.14 16 37 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.13 2.66 5.71 -52.49 -0.30 2.36 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -31.91 367.15 -8.69 -40.60 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.11 Total: 8.69 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -3.20 Total: -12.53 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.02 Total: -41.89 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.09 Total: -15.38 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.91 -8.69 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188482360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.751 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds