Wall clock time and date at job start Tue Mar 31 2020 09:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.50703 * 120.00097 * 2 1 4 4 C 1.31004 * 120.00450 * 179.97438 * 2 1 3 5 5 C 1.50703 * 119.99489 * 353.64363 * 4 2 1 6 6 N 1.46502 * 109.46630 * 233.97007 * 5 4 2 7 7 C 1.34784 * 119.99728 * 180.02562 * 6 5 4 8 8 O 1.21584 * 119.99939 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99581 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99750 * 179.97438 * 9 7 6 11 11 C 1.50693 * 109.47128 * 180.02562 * 10 9 7 12 12 C 1.38303 * 119.93402 * 90.00045 * 11 10 9 13 13 C 1.38094 * 120.07543 * 179.97438 * 12 11 10 14 14 C 1.38885 * 119.92755 * 0.02751 * 13 12 11 15 15 O 1.35753 * 120.06641 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00134 * 5.49105 * 15 14 13 17 17 H 1.07998 * 119.99868 * 5.34439 * 16 15 14 18 18 C 1.38659 * 119.99877 * 185.33959 * 16 15 14 19 19 N 1.31548 * 120.00187 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99868 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47094 * 60.00412 * 20 18 16 22 22 H 1.48495 * 109.47022 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47299 * 300.00441 * 20 18 16 24 24 C 1.38878 * 119.86304 * 0.26714 * 14 13 12 25 25 C 1.38103 * 119.92738 * 359.45595 * 24 14 13 26 26 H 1.09003 * 109.46986 * 265.70098 * 1 2 3 27 27 H 1.09005 * 109.47407 * 25.69820 * 1 2 3 28 28 H 1.08996 * 109.47417 * 145.70119 * 1 2 3 29 29 H 1.09002 * 109.46703 * 269.99738 * 3 2 1 30 30 H 1.09002 * 109.46982 * 29.99238 * 3 2 1 31 31 H 1.08995 * 109.47604 * 149.99917 * 3 2 1 32 32 H 1.07993 * 120.00263 * 173.63509 * 4 2 1 33 33 H 1.08996 * 109.47441 * 113.96769 * 5 4 2 34 34 H 1.09005 * 109.47330 * 353.96692 * 5 4 2 35 35 H 0.96995 * 120.00526 * 359.97438 * 6 5 4 36 36 H 0.96995 * 120.00673 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47110 * 60.00105 * 10 9 7 38 38 H 1.08997 * 109.46685 * 300.00159 * 10 9 7 39 39 H 1.08001 * 119.96022 * 359.97438 * 12 11 10 40 40 H 1.07997 * 120.03489 * 179.97438 * 13 12 11 41 41 H 0.96997 * 120.00792 * 179.97438 * 19 18 16 42 42 H 1.07994 * 120.03657 * 179.72966 * 24 14 13 43 43 H 1.08002 * 119.96724 * 180.27002 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4154 -2.4355 0.1456 6 7 1.9821 -3.2022 1.2580 7 6 1.4702 -4.4080 1.5752 8 8 0.5384 -4.8596 0.9379 9 7 1.9919 -5.1135 2.5982 10 6 1.4351 -6.4239 2.9434 11 6 2.1905 -6.9980 4.1141 12 6 1.7672 -6.7355 5.4043 13 6 2.4569 -7.2606 6.4793 14 6 3.5772 -8.0526 6.2637 15 8 4.2571 -8.5707 7.3184 16 6 3.7291 -8.3740 8.5433 17 1 2.7634 -7.9014 8.6455 18 6 4.4259 -8.7786 9.6717 19 7 5.6024 -9.3539 9.5472 20 14 3.6941 -8.5068 11.3687 21 1 2.3987 -9.2257 11.4701 22 1 4.6295 -9.0235 12.3997 23 1 3.4724 -7.0544 11.5854 24 6 4.0034 -8.3095 4.9671 25 6 3.3059 -7.7861 3.8962 26 1 -0.3633 -0.0770 1.0248 27 1 -0.3634 0.9260 -0.4456 28 1 -0.3634 -0.8489 -0.5791 29 1 2.4421 1.6197 -1.0277 30 1 1.6713 2.0648 0.5137 31 1 3.2128 1.1749 0.5138 32 1 3.2370 -1.1374 -0.1032 33 1 1.5058 -3.0110 -0.7756 34 1 0.3634 -2.2306 0.3443 35 1 2.7262 -2.8424 1.7657 36 1 2.7359 -4.7537 3.1059 37 1 1.5255 -7.0938 2.0883 38 1 0.3837 -6.3134 3.2088 39 1 0.8962 -6.1191 5.5713 40 1 2.1261 -7.0548 7.4865 41 1 6.0900 -9.6366 10.3366 42 1 4.8767 -8.9214 4.7964 43 1 3.6342 -7.9890 2.8875 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188482360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:26 Heat of formation + Delta-G solvation = -47.793690 kcal Electronic energy + Delta-G solvation = -23027.780590 eV Core-core repulsion = 19458.900088 eV Total energy + Delta-G solvation = -3568.880502 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14868 -40.66792 -38.61026 -37.93373 -35.60957 -35.13682 -34.26330 -31.84196 -31.49166 -29.66510 -28.61953 -27.62083 -26.24273 -24.57134 -23.63427 -22.19113 -21.91083 -19.94135 -19.78701 -18.88529 -18.45098 -17.50681 -16.84219 -16.43667 -16.32289 -16.01003 -15.82616 -15.55434 -15.37933 -15.31033 -14.93789 -14.71559 -14.46537 -14.34052 -14.22586 -13.76929 -13.53072 -13.24093 -13.16275 -13.01312 -12.81021 -12.53721 -12.43141 -12.37160 -12.20830 -12.13951 -11.80725 -11.43165 -11.22411 -10.79731 -10.38539 -9.87651 -9.79944 -9.56758 -9.01377 -8.48050 -6.16195 0.52482 0.58401 1.02238 1.36045 1.45741 1.51839 2.01963 2.17504 2.18450 2.81876 3.15190 3.48196 3.52458 3.79459 3.89570 4.03956 4.04628 4.18731 4.31624 4.47010 4.49245 4.58022 4.61294 4.69893 4.76953 4.82088 4.82904 4.93843 4.97724 5.05139 5.12821 5.13889 5.19516 5.27429 5.46392 5.51256 5.53654 5.69696 5.70313 5.76496 5.94368 6.01338 6.05252 6.17071 6.96604 7.12100 7.60276 7.75927 8.74485 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021274 B = 0.002141 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.873733 B =13072.247034 C =13670.069715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C -0.120 4.120 4 C -0.197 4.197 5 C 0.167 3.833 6 N -0.732 5.732 7 C 0.699 3.301 8 O -0.638 6.638 9 N -0.731 5.731 10 C 0.204 3.796 11 C -0.181 4.181 12 C -0.045 4.045 13 C -0.244 4.244 14 C 0.122 3.878 15 O -0.229 6.229 16 C -0.413 4.413 17 H 0.103 0.897 18 C -0.022 4.022 19 N -0.918 5.918 20 Si 1.018 2.982 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.205 4.205 25 C -0.043 4.043 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.408 0.592 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.116 0.884 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 19.106 -16.453 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.104 4.104 3 C -0.177 4.177 4 C -0.215 4.215 5 C 0.044 3.956 6 N -0.388 5.388 7 C 0.399 3.601 8 O -0.520 6.520 9 N -0.386 5.386 10 C 0.080 3.920 11 C -0.182 4.182 12 C -0.063 4.063 13 C -0.263 4.263 14 C 0.071 3.929 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.120 0.880 18 C -0.220 4.220 19 N -0.556 5.556 20 Si 0.837 3.163 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.224 4.224 25 C -0.061 4.061 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.243 0.757 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.897 18.471 -16.902 26.253 hybrid contribution 0.736 -0.050 1.391 1.575 sum -7.161 18.421 -15.511 25.124 Atomic orbital electron populations 1.21009 0.92130 1.03151 1.02478 1.21971 0.96307 0.95613 0.96520 1.20916 0.99886 0.93964 1.02938 1.22576 1.00412 0.92235 1.06306 1.20158 0.97001 0.90010 0.88471 1.45009 1.39004 1.17975 1.36800 1.16130 0.82056 0.81132 0.80807 1.90883 1.32856 1.71969 1.56318 1.45238 1.38666 1.20367 1.34336 1.19711 0.95867 0.82364 0.94034 1.19484 0.99713 1.05272 0.93751 1.20940 0.97981 0.96318 0.91106 1.21248 0.99420 1.05199 1.00420 1.20008 0.91832 0.91990 0.89041 1.83956 1.47578 1.67734 1.14198 1.21771 1.04429 1.42254 0.80485 0.87994 1.26582 0.95953 0.95723 1.03728 1.70165 1.14170 1.39221 1.32034 0.84660 0.78060 0.79597 0.74012 1.18263 1.19748 1.18059 1.20443 1.04166 1.07966 0.89815 1.20882 0.93060 0.94189 0.97979 0.91307 0.90359 0.91751 0.90504 0.90826 0.91220 0.85559 0.92377 0.91634 0.75427 0.75687 0.91213 0.91484 0.84364 0.86174 0.91790 0.86632 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.92 71.23 0.64 -0.81 16 2 C -0.10 -1.17 6.05 -16.49 -0.10 -1.27 16 3 C -0.12 -0.95 10.01 71.24 0.71 -0.24 16 4 C -0.20 -2.49 9.21 25.64 0.24 -2.25 16 5 C 0.17 2.93 5.70 85.63 0.49 3.42 16 6 N -0.73 -13.50 5.55 -482.28 -2.68 -16.18 16 7 C 0.70 17.76 8.57 179.05 1.53 19.29 16 8 O -0.64 -21.59 16.34 -3.98 -0.07 -21.66 16 9 N -0.73 -16.42 5.55 -482.29 -2.68 -19.10 16 10 C 0.20 5.11 5.80 85.63 0.50 5.61 16 11 C -0.18 -5.23 5.25 -19.84 -0.10 -5.34 16 12 C -0.04 -1.44 9.69 22.25 0.22 -1.23 16 13 C -0.24 -10.02 9.13 22.39 0.20 -9.82 16 14 C 0.12 5.82 6.65 22.58 0.15 5.97 16 15 O -0.23 -13.36 9.76 -22.76 -0.22 -13.58 16 16 C -0.41 -23.43 9.44 67.92 0.64 -22.79 16 17 H 0.10 5.27 5.29 -2.91 -0.02 5.26 16 18 C -0.02 -1.22 5.49 84.84 0.47 -0.75 16 19 N -0.92 -55.34 13.67 21.61 0.30 -55.04 16 20 Si 1.02 41.86 29.55 68.60 2.03 43.89 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 C -0.20 -8.20 9.99 22.39 0.22 -7.98 16 25 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.65 8.10 -2.38 -0.02 0.63 16 28 H 0.06 0.79 6.66 -2.39 -0.02 0.78 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 31 H 0.07 0.51 8.06 -2.39 -0.02 0.49 16 32 H 0.13 1.32 8.05 -2.91 -0.02 1.29 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.26 5.77 -2.38 -0.01 1.25 16 35 H 0.41 5.39 8.48 -92.71 -0.79 4.60 16 36 H 0.41 7.70 8.48 -92.71 -0.79 6.91 16 37 H 0.07 1.76 8.09 -2.39 -0.02 1.75 16 38 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 39 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.12 5.06 5.71 -2.91 -0.02 5.04 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 43 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -73.02 367.15 2.16 -70.86 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.53 Total: 30.13 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 6.02 Total: -19.31 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -5.06 Total: -90.32 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.29 Total: -35.24 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -73.02 2.16 -70.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188482360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.065 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds