Wall clock time and date at job start Tue Mar 31 2020 08:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33023 * 119.99678 * 2 1 4 4 C 1.50697 * 119.99937 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47093 * 95.00066 * 4 3 2 6 6 C 1.47053 * 119.99985 * 180.02562 * 3 2 1 7 7 O 1.21619 * 119.99918 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99963 * 179.97438 * 6 3 2 9 9 C 1.39466 * 119.99708 * 179.97438 * 8 6 3 10 10 N 1.32293 * 119.73546 * 0.24956 * 9 8 6 11 11 C 1.31958 * 121.69132 * 180.28487 * 10 9 8 12 12 C 1.38082 * 120.95576 * 359.72777 * 11 10 9 13 13 C 1.38784 * 119.36023 * 0.02562 * 12 11 10 14 14 C 1.38787 * 118.45017 * 359.97438 * 13 12 11 15 15 O 1.35973 * 120.50046 * 179.97438 * 14 13 12 16 16 C 1.42906 * 116.99587 * 0.02562 * 15 14 13 17 17 C 1.53006 * 109.46748 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46866 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00305 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99832 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46901 * 89.99815 * 22 20 18 24 24 H 1.48488 * 109.47487 * 210.00255 * 22 20 18 25 25 H 1.48503 * 109.47026 * 330.00635 * 22 20 18 26 26 H 1.08995 * 109.47581 * 60.00121 * 1 2 3 27 27 H 1.09010 * 109.46858 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47180 * 299.99449 * 1 2 3 29 29 H 1.08001 * 119.99829 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47148 * 214.99866 * 4 3 2 31 31 H 1.09004 * 109.47680 * 334.99925 * 4 3 2 32 32 H 1.09007 * 109.47495 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47183 * 299.99428 * 5 4 3 34 34 H 1.09000 * 109.47229 * 59.99849 * 5 4 3 35 35 H 0.96999 * 119.99984 * 359.97438 * 8 6 3 36 36 H 1.08000 * 119.51820 * 179.74730 * 11 10 9 37 37 H 1.07998 * 120.31648 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.77501 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47490 * 59.99648 * 16 15 14 40 40 H 1.09001 * 109.47232 * 299.99002 * 16 15 14 41 41 H 1.08993 * 109.46955 * 299.99993 * 17 16 15 42 42 H 1.09000 * 109.47050 * 59.99822 * 17 16 15 43 43 H 0.97002 * 120.00008 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 1.4185 2.4571 0.0006 5 6 1.2730 2.9613 1.4377 6 6 3.6426 1.1521 -0.0006 7 8 4.2508 0.0989 -0.0015 8 7 4.3165 2.3194 -0.0011 9 6 5.7111 2.3194 -0.0011 10 7 6.3673 1.1707 -0.0056 11 6 7.6861 1.1256 -0.0002 12 6 8.4364 2.2848 0.0048 13 6 7.7906 3.5133 0.0047 14 6 6.4029 3.5308 -0.0011 15 8 5.7276 4.7110 -0.0009 16 6 6.5106 5.9064 0.0048 17 6 5.5833 7.1234 0.0034 18 6 6.4090 8.3841 0.0101 19 1 7.4873 8.3233 0.0153 20 6 5.7879 9.6150 0.0107 21 7 6.5085 10.7151 0.0170 22 14 3.9229 9.7201 0.0025 23 1 3.4224 9.7441 1.4004 24 1 3.5000 10.9604 -0.6960 25 1 3.3636 8.5393 -0.7032 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 2.0470 -0.9353 -0.0004 30 1 1.9656 3.1928 -0.5889 31 1 0.4301 2.3062 -0.4334 32 1 0.7283 3.9055 1.4382 33 1 0.7258 2.2256 2.0272 34 1 2.2614 3.1123 1.8717 35 1 3.8314 3.1594 -0.0015 36 1 8.1858 0.1682 0.0000 37 1 9.5152 2.2359 0.0088 38 1 8.3549 4.4342 0.0081 39 1 7.1430 5.9309 -0.8827 40 1 7.1360 5.9269 0.8973 41 1 4.9582 7.1028 -0.8891 42 1 4.9507 7.0992 0.8907 43 1 6.0715 11.5812 0.0171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188783607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:04 Heat of formation + Delta-G solvation = -25.465077 kcal Electronic energy + Delta-G solvation = -24455.961307 eV Core-core repulsion = 20888.049046 eV Total energy + Delta-G solvation = -3567.912261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97311 -39.51499 -37.89964 -36.27114 -34.94422 -33.45611 -31.78760 -31.51613 -30.87751 -29.40395 -27.84487 -25.65545 -23.95622 -23.44860 -22.85477 -21.54558 -20.54267 -19.01807 -18.10969 -17.63891 -17.10035 -16.61599 -16.03034 -15.89014 -15.29650 -15.05043 -14.66587 -14.27534 -14.20898 -14.02126 -13.99505 -13.50498 -13.34075 -13.13046 -12.72142 -12.58856 -12.51807 -12.31824 -12.21484 -12.06693 -11.29798 -11.25343 -11.10794 -10.99799 -10.75760 -10.39543 -10.20157 -10.15097 -9.94443 -9.45459 -9.31047 -9.22119 -9.07442 -8.70589 -7.71077 -6.21283 -4.23047 0.97409 1.40111 1.46263 2.89208 3.21282 3.21353 3.29221 3.32200 3.42682 3.99971 4.30945 4.31820 4.55665 4.68157 4.85486 4.91075 4.91608 5.05079 5.11229 5.12538 5.20241 5.25229 5.32231 5.42618 5.43082 5.58618 5.70857 5.75807 5.78142 5.80236 6.00526 6.01951 6.13953 6.21871 6.28952 6.31069 6.37327 6.56827 6.93312 7.10841 7.24800 7.49293 7.62800 8.03735 8.29817 8.32688 8.78973 9.38342 10.91177 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.004141 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.407602 B = 6760.632813 C = 9044.557385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.094 4.094 5 C -0.151 4.151 6 C 0.546 3.454 7 O -0.485 6.485 8 N -0.648 5.648 9 C 0.329 3.671 10 N -0.444 5.444 11 C 0.077 3.923 12 C -0.160 4.160 13 C -0.146 4.146 14 C 0.065 3.935 15 O -0.320 6.320 16 C 0.073 3.927 17 C -0.007 4.007 18 C -0.529 4.529 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.881 3.119 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.263 1.263 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.423 0.577 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.157 -19.113 0.377 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.187 4.187 4 C -0.131 4.131 5 C -0.208 4.208 6 C 0.334 3.666 7 O -0.357 6.357 8 N -0.296 5.296 9 C 0.096 3.904 10 N -0.159 5.159 11 C -0.080 4.080 12 C -0.181 4.181 13 C -0.172 4.172 14 C 0.014 3.986 15 O -0.233 6.233 16 C -0.001 4.001 17 C -0.045 4.045 18 C -0.567 4.567 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.707 3.293 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.188 1.188 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.496 -20.395 0.371 22.097 hybrid contribution -0.223 1.624 0.008 1.640 sum -8.719 -18.771 0.379 20.700 Atomic orbital electron populations 1.21003 0.92036 1.02982 1.02756 1.23563 0.96274 0.97743 0.91478 1.21412 0.92094 0.96842 1.08366 1.20636 1.00431 0.93683 0.98348 1.21761 1.02472 1.01155 0.95430 1.18529 0.87725 0.83449 0.76917 1.90866 1.69341 1.30270 1.45257 1.43408 1.03414 1.10802 1.71968 1.17812 0.84644 0.87184 1.00736 1.67649 1.10055 1.24688 1.13520 1.22439 0.88239 0.98503 0.98828 1.21907 1.01363 0.92404 1.02430 1.21632 0.92561 1.00088 1.02929 1.19554 0.91543 0.86477 1.01068 1.86046 1.37051 1.12323 1.87882 1.23147 0.95256 0.80978 1.00695 1.19582 0.95900 0.91092 0.97899 1.20810 0.94846 0.88360 1.52669 0.90726 1.24934 0.98518 0.95460 0.94050 1.69886 1.35839 0.97771 1.49883 0.86759 0.85805 0.77933 0.78769 1.20023 1.21134 1.18774 0.90561 0.91424 0.90634 0.85521 0.90922 0.90088 0.91753 0.92464 0.92377 0.73836 0.82556 0.84666 0.83572 0.92303 0.92324 0.95373 0.95803 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.84 36.01 0.32 -0.52 16 2 C -0.07 -0.68 9.84 -36.12 -0.36 -1.04 16 3 C -0.18 -2.05 5.25 -102.86 -0.54 -2.59 16 4 C -0.09 -0.85 5.16 -27.89 -0.14 -0.99 16 5 C -0.15 -1.35 9.89 37.16 0.37 -0.98 16 6 C 0.55 8.13 7.71 -12.69 -0.10 8.04 16 7 O -0.49 -8.73 14.47 5.26 0.08 -8.65 16 8 N -0.65 -9.70 5.34 -12.38 -0.07 -9.77 16 9 C 0.33 5.48 7.44 -154.52 -1.15 4.33 16 10 N -0.44 -7.49 7.87 -12.24 -0.10 -7.58 16 11 C 0.08 1.04 11.17 -17.55 -0.20 0.85 16 12 C -0.16 -1.98 10.10 -39.44 -0.40 -2.38 16 13 C -0.15 -2.10 9.14 -39.18 -0.36 -2.45 16 14 C 0.06 1.06 6.72 -38.91 -0.26 0.80 16 15 O -0.32 -5.64 9.38 -19.66 -0.18 -5.83 16 16 C 0.07 1.38 4.70 37.16 0.17 1.56 16 17 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 18 C -0.53 -14.25 9.66 -34.44 -0.33 -14.58 16 19 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 22 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 26 H 0.08 0.43 7.42 -51.93 -0.39 0.05 16 27 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.08 0.44 7.82 -51.93 -0.41 0.03 16 29 H 0.13 1.32 7.49 -52.49 -0.39 0.93 16 30 H 0.07 0.68 6.96 -51.93 -0.36 0.32 16 31 H 0.08 0.59 6.32 -51.93 -0.33 0.26 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.46 7.86 -51.93 -0.41 0.05 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.42 5.68 6.26 -40.82 -0.26 5.42 16 36 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.15 1.96 6.44 -52.49 -0.34 1.62 16 39 H 0.06 1.07 7.70 -51.93 -0.40 0.68 16 40 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 41 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 42 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -32.66 358.32 -8.10 -40.76 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.14 Total: 3.73 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -3.19 Total: -8.31 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.61 Total: -43.06 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.11 Total: -14.48 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.66 -8.10 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188783607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.292 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds