Wall clock time and date at job start Tue Mar 31 2020 09:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 C 1.53002 * 109.47104 * 120.00283 * 2 1 3 5 5 N 1.46499 * 109.46832 * 174.99901 * 4 2 1 6 6 C 1.46503 * 119.99773 * 89.99823 * 5 4 2 7 7 C 1.50700 * 109.47108 * 79.17799 * 6 5 4 8 8 N 1.34776 * 120.00323 * 180.02562 * 7 6 5 9 9 O 1.21288 * 120.00180 * 359.97438 * 7 6 5 10 10 C 1.34777 * 120.00025 * 269.99532 * 5 4 2 11 11 O 1.21543 * 120.00030 * 2.08102 * 10 5 4 12 12 C 1.47887 * 119.99762 * 182.07593 * 10 5 4 13 13 C 1.39915 * 120.02476 * 22.60627 * 12 10 5 14 14 C 1.38338 * 120.35765 * 179.73698 * 13 12 10 15 15 C 1.37757 * 120.40644 * 0.56350 * 14 13 12 16 16 C 1.40744 * 120.04100 * 359.69407 * 15 14 13 17 17 C 1.41444 * 120.17656 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00088 * 148.59315 * 17 16 15 19 19 C 1.39938 * 119.99759 * 328.58985 * 17 16 15 20 20 N 1.30823 * 119.99730 * 165.77611 * 19 17 16 21 21 Si 1.86799 * 120.00157 * 345.77640 * 19 17 16 22 22 H 1.48496 * 109.47187 * 87.03241 * 21 19 17 23 23 H 1.48499 * 109.47205 * 207.03282 * 21 19 17 24 24 H 1.48504 * 109.47244 * 327.03453 * 21 19 17 25 25 C 1.38995 * 120.02390 * 202.88200 * 12 10 5 26 26 H 1.08997 * 109.46927 * 299.99570 * 1 2 3 27 27 H 1.08999 * 109.47087 * 60.00394 * 1 2 3 28 28 H 1.09002 * 109.47181 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46659 * 239.99910 * 2 1 3 30 30 H 1.09002 * 109.47013 * 300.00271 * 3 2 1 31 31 H 1.09000 * 109.47210 * 59.99708 * 3 2 1 32 32 H 1.08995 * 109.47259 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46791 * 294.99883 * 4 2 1 34 34 H 1.09001 * 109.47014 * 54.99875 * 4 2 1 35 35 H 1.08994 * 109.46936 * 199.17193 * 6 5 4 36 36 H 1.09000 * 109.47404 * 319.17326 * 6 5 4 37 37 H 0.97010 * 119.99707 * 359.97438 * 8 7 6 38 38 H 0.96995 * 120.00620 * 179.97438 * 8 7 6 39 39 H 1.07997 * 119.82383 * 0.02562 * 13 12 10 40 40 H 1.07994 * 119.79474 * 180.27518 * 14 13 12 41 41 H 1.07997 * 119.97373 * 179.71719 * 15 14 13 42 42 H 0.96998 * 119.99993 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.20129 * 359.95418 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.3343 0.2340 1.7612 7 6 4.4028 0.0689 3.2575 8 7 5.1192 0.9366 3.9993 9 8 3.8125 -0.8445 3.7945 10 6 4.0757 -1.8987 0.6115 11 8 3.3842 -2.7601 0.1046 12 6 5.5489 -2.0271 0.5929 13 6 6.3232 -1.3438 1.5369 14 6 7.7014 -1.4632 1.5292 15 6 8.3281 -2.2468 0.5853 16 6 7.5661 -2.9374 -0.3756 17 6 8.2065 -3.7432 -1.3458 18 1 7.7114 -4.6231 -1.7290 19 6 9.4816 -3.4001 -1.8090 20 7 10.1888 -4.2703 -2.4829 21 14 10.1741 -1.6996 -1.4651 22 1 10.8562 -1.7003 -0.1461 23 1 11.1483 -1.3380 -2.5260 24 1 9.0682 -0.7086 -1.4499 25 6 6.1657 -2.8222 -0.3660 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.7517 -0.1584 2.1370 34 1 1.6054 -1.7199 1.2951 35 1 5.3386 0.1712 1.3424 36 1 3.9012 1.2053 1.5223 37 1 5.5911 1.6674 3.5698 38 1 5.1631 0.8306 4.9624 39 1 5.8421 -0.7234 2.2785 40 1 8.2899 -0.9352 2.2648 41 1 9.4047 -2.3314 0.5829 42 1 11.0728 -4.0327 -2.8037 43 1 5.5722 -3.3485 -1.0989 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195468501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:11 Heat of formation + Delta-G solvation = -29.499146 kcal Electronic energy + Delta-G solvation = -25565.897135 eV Core-core repulsion = 21997.809944 eV Total energy + Delta-G solvation = -3568.087191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.66421 -38.80307 -37.59814 -36.30810 -34.36312 -33.69936 -33.50281 -30.81175 -30.08368 -28.51372 -27.19115 -26.12337 -25.17812 -22.56098 -21.14930 -20.92944 -20.34978 -19.17901 -17.96300 -17.26273 -16.97818 -16.48489 -16.05506 -15.81673 -15.17519 -14.82889 -14.62638 -14.15524 -13.87118 -13.65073 -13.59273 -13.30974 -12.91978 -12.79234 -12.67897 -12.44489 -12.29282 -11.89013 -11.73656 -11.42711 -11.28114 -11.11138 -10.95038 -10.69555 -10.67854 -10.42256 -10.18253 -9.94580 -9.78115 -9.73494 -9.39057 -9.10784 -8.48089 -7.92055 -7.77540 -7.02695 -4.60526 1.88472 2.39462 2.59797 3.00446 3.05150 3.12722 3.18016 3.41261 3.71323 3.87648 4.40077 4.78236 4.80950 4.88639 5.01687 5.05310 5.14644 5.21777 5.45268 5.51293 5.53627 5.62929 5.73473 5.78874 5.84843 5.93980 5.96217 6.06305 6.22254 6.27249 6.34642 6.58825 6.61094 6.66843 6.73243 6.94324 7.15858 7.19442 7.31779 7.42821 7.61956 7.70894 7.91148 8.20096 8.24328 8.47583 8.62855 8.67544 9.99669 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.004524 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.644807 B = 6188.327355 C = 6960.315996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.150 4.150 4 C 0.127 3.873 5 N -0.590 5.590 6 C 0.049 3.951 7 C 0.499 3.501 8 N -0.858 5.858 9 O -0.528 6.528 10 C 0.569 3.431 11 O -0.537 6.537 12 C -0.102 4.102 13 C -0.249 4.249 14 C -0.079 4.079 15 C -0.228 4.228 16 C 0.086 3.914 17 C -0.440 4.440 18 H 0.094 0.906 19 C 0.081 3.919 20 N -0.805 5.805 21 Si 0.918 3.082 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.247 1.247 25 C -0.137 4.137 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.101 0.899 37 H 0.402 0.598 38 H 0.400 0.600 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 15.751 7.276 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.207 4.207 4 C 0.005 3.995 5 N -0.322 5.322 6 C -0.078 4.078 7 C 0.283 3.717 8 N -0.423 5.423 9 O -0.403 6.403 10 C 0.361 3.639 11 O -0.414 6.414 12 C -0.105 4.105 13 C -0.268 4.268 14 C -0.097 4.097 15 C -0.248 4.248 16 C 0.083 3.917 17 C -0.469 4.469 18 H 0.112 0.888 19 C -0.138 4.138 20 N -0.429 5.429 21 Si 0.745 3.255 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.171 1.171 25 C -0.157 4.157 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.173 0.827 36 H 0.118 0.882 37 H 0.230 0.770 38 H 0.231 0.769 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.332 14.470 6.973 18.576 hybrid contribution 0.820 1.011 0.481 1.388 sum -8.512 15.481 7.454 19.175 Atomic orbital electron populations 1.21746 0.94757 1.01996 1.01526 1.21550 0.95826 0.96478 0.99690 1.21975 1.01392 0.95936 1.01432 1.21446 0.79435 1.01859 0.96789 1.47281 1.05938 1.20978 1.58012 1.22730 1.02017 0.92899 0.90115 1.21247 0.78169 0.81588 0.90740 1.43890 1.54262 1.32732 1.11435 1.90776 1.44365 1.31498 1.73691 1.18816 0.88716 0.80076 0.76326 1.90699 1.64924 1.40110 1.45701 1.19418 0.90281 1.01606 0.99191 1.21202 0.93970 1.08259 1.03380 1.20542 0.93919 0.97808 0.97436 1.21340 0.99079 1.05692 0.98665 1.17718 0.91365 0.90689 0.91964 1.19554 0.99299 1.09337 1.18672 0.88768 1.26185 0.95554 0.99383 0.92691 1.69659 1.10577 1.35181 1.27506 0.86283 0.79341 0.82530 0.77374 1.19321 1.21849 1.17054 1.21264 0.94450 1.00646 0.99328 0.92827 0.92580 0.92404 0.90388 0.92700 0.92957 0.92154 0.91067 0.89816 0.82730 0.88152 0.77025 0.76897 0.86738 0.88287 0.87397 0.90247 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 2 C -0.12 -1.39 3.13 -90.62 -0.28 -1.67 16 3 C -0.15 -1.46 8.27 37.16 0.31 -1.16 16 4 C 0.13 1.80 4.59 -4.04 -0.02 1.79 16 5 N -0.59 -9.53 1.87 -176.16 -0.33 -9.86 16 6 C 0.05 0.62 4.73 -5.19 -0.02 0.60 16 7 C 0.50 6.55 5.95 -10.99 -0.07 6.48 16 8 N -0.86 -7.11 8.87 31.22 0.28 -6.84 16 9 O -0.53 -9.44 17.04 5.55 0.09 -9.34 16 10 C 0.57 11.73 7.53 -12.31 -0.09 11.63 16 11 O -0.54 -12.53 16.16 5.33 0.09 -12.44 16 12 C -0.10 -2.21 5.61 -105.04 -0.59 -2.79 16 13 C -0.25 -4.79 7.54 -38.92 -0.29 -5.08 16 14 C -0.08 -1.56 10.01 -39.72 -0.40 -1.96 16 15 C -0.23 -5.20 7.23 -38.81 -0.28 -5.48 16 16 C 0.09 2.13 5.10 -106.87 -0.55 1.59 16 17 C -0.44 -11.72 9.59 -37.73 -0.36 -12.08 16 18 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 19 C 0.08 2.06 5.45 -17.34 -0.09 1.96 16 20 N -0.81 -20.99 13.93 55.55 0.77 -20.22 16 21 Si 0.92 19.80 24.52 -169.99 -4.17 15.63 16 22 H -0.27 -5.52 6.35 56.52 0.36 -5.16 16 23 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.25 -5.35 7.04 56.52 0.40 -4.95 16 25 C -0.14 -3.28 9.33 -38.44 -0.36 -3.64 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.60 5.68 -51.93 -0.29 0.31 16 33 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 34 H 0.08 1.35 7.45 -51.93 -0.39 0.97 16 35 H 0.16 2.06 4.22 -51.95 -0.22 1.85 16 36 H 0.10 0.92 5.56 -51.93 -0.29 0.63 16 37 H 0.40 2.01 8.83 -40.82 -0.36 1.65 16 38 H 0.40 2.95 8.93 -40.82 -0.36 2.59 16 39 H 0.12 1.86 2.60 -52.49 -0.14 1.72 16 40 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 2.44 4.40 -52.49 -0.23 2.21 16 42 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 43 H 0.11 2.80 7.81 -52.49 -0.41 2.39 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -32.31 342.91 -6.53 -38.84 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.67 Total: 9.95 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -2.76 Total: -10.88 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.72 Total: -36.91 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.18 Total: -21.79 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.17 Total: 15.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.31 -6.53 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195468501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.340 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds