Wall clock time and date at job start Tue Mar 31 2020 09:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 C 1.52997 * 109.47321 * 120.00101 * 2 1 3 5 5 O 1.42898 * 109.47397 * 175.00144 * 4 2 1 6 6 C 1.35432 * 117.00195 * 179.97438 * 5 4 2 7 7 N 1.32222 * 119.80109 * 0.02562 * 6 5 4 8 8 C 1.31896 * 121.80509 * 179.97438 * 7 6 5 9 9 C 1.38372 * 121.19788 * 359.97438 * 8 7 6 10 10 C 1.38320 * 119.46093 * 0.02562 * 9 8 7 11 11 C 1.40037 * 118.34783 * 359.74762 * 10 9 8 12 12 C 1.47420 * 120.60452 * 180.24891 * 11 10 9 13 13 O 1.21630 * 119.99959 * 126.85512 * 12 11 10 14 14 N 1.34781 * 120.00045 * 306.85341 * 12 11 10 15 15 C 1.36896 * 120.00060 * 185.81233 * 14 12 11 16 16 H 1.08000 * 119.99803 * 223.63465 * 15 14 12 17 17 C 1.39027 * 120.00389 * 43.63435 * 15 14 12 18 18 N 1.31378 * 119.99419 * 6.60316 * 17 15 14 19 19 Si 1.86793 * 120.00276 * 186.60173 * 17 15 14 20 20 H 1.48507 * 109.47003 * 60.00332 * 19 17 15 21 21 H 1.48506 * 109.47209 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47156 * 300.00130 * 19 17 15 23 23 C 1.46500 * 119.99542 * 5.81166 * 14 12 11 24 24 C 1.53002 * 117.49615 * 183.18965 * 23 14 12 25 25 C 1.52997 * 117.49655 * 114.57044 * 23 14 12 26 26 H 1.09005 * 109.47116 * 59.99758 * 1 2 3 27 27 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47259 * 299.99756 * 1 2 3 29 29 H 1.08999 * 109.47259 * 240.00244 * 2 1 3 30 30 H 1.08998 * 109.47508 * 300.00424 * 3 2 1 31 31 H 1.08999 * 109.46873 * 60.00008 * 3 2 1 32 32 H 1.09004 * 109.47509 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46957 * 294.99973 * 4 2 1 34 34 H 1.08998 * 109.46781 * 54.99683 * 4 2 1 35 35 H 1.08001 * 119.40185 * 179.97438 * 8 7 6 36 36 H 1.07998 * 120.26623 * 180.02562 * 9 8 7 37 37 H 1.08006 * 120.82151 * 180.02562 * 10 9 8 38 38 H 0.97006 * 119.99834 * 184.99581 * 18 17 15 39 39 H 1.09003 * 115.55268 * 328.90057 * 23 14 12 40 40 H 1.08999 * 117.50030 * 0.02562 * 24 23 14 41 41 H 1.09004 * 117.49608 * 145.01811 * 24 23 14 42 42 H 1.09004 * 117.49988 * 214.97515 * 25 23 14 43 43 H 1.08997 * 117.50079 * 0.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4642 -0.8238 1.1920 6 6 4.0785 -1.4402 2.2297 7 7 3.3583 -1.9134 3.2325 8 6 3.9152 -2.5208 4.2624 9 6 5.2863 -2.6908 4.3386 10 6 6.0886 -2.2152 3.3172 11 6 5.4751 -1.5781 2.2315 12 6 6.2821 -1.0572 1.1132 13 8 6.0190 -1.3814 -0.0292 14 7 7.3113 -0.2217 1.3566 15 6 7.9854 0.3557 0.3144 16 1 9.0643 0.4036 0.3295 17 6 7.2814 0.8805 -0.7635 18 7 5.9695 0.9401 -0.7247 19 14 8.2005 1.5006 -2.2667 20 1 8.9875 0.3893 -2.8592 21 1 7.2275 2.0063 -3.2682 22 1 9.1173 2.5988 -1.8682 23 6 7.7085 0.0685 2.7365 24 6 8.8349 1.0818 2.9491 25 6 9.0904 -0.4075 3.1888 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.7517 -0.1583 2.1369 34 1 1.6054 -1.7197 1.2951 35 1 3.2897 -2.8921 5.0607 36 1 5.7263 -3.1908 5.1888 37 1 7.1612 -2.3364 3.3539 38 1 5.4743 1.2383 -1.5037 39 1 6.9038 0.0483 3.4715 40 1 9.2802 1.5329 2.0624 41 1 8.7714 1.7288 3.8241 42 1 9.1950 -0.7405 4.2214 43 1 9.7042 -0.9362 2.4595 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263977286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:46 Heat of formation + Delta-G solvation = 3.216902 kcal Electronic energy + Delta-G solvation = -26107.485972 eV Core-core repulsion = 22540.817455 eV Total energy + Delta-G solvation = -3566.668517 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.25308 -38.33599 -37.60934 -35.92918 -34.86540 -32.80926 -32.11942 -30.73259 -29.92729 -26.83454 -26.24697 -25.29317 -23.56014 -22.45808 -21.70669 -21.10557 -19.98300 -19.55072 -17.92171 -16.93317 -16.41607 -16.03577 -15.71004 -14.95499 -14.59682 -14.42373 -14.27625 -13.89344 -13.56375 -13.54229 -13.05604 -12.75071 -12.63286 -12.48646 -12.33555 -12.04535 -11.91207 -11.46877 -11.07089 -11.02756 -10.92562 -10.87536 -10.66938 -10.59397 -10.35019 -10.24952 -10.20036 -9.98406 -9.77634 -9.36030 -9.31918 -8.70422 -8.08509 -7.79922 -6.98172 -5.95911 -3.84063 1.43407 1.70262 3.33146 3.38816 3.39917 3.54161 4.01523 4.23093 4.38579 4.63237 4.81539 4.91312 5.09238 5.15199 5.20652 5.31838 5.35415 5.49955 5.54051 5.59668 5.65518 5.69877 5.77412 5.81486 5.85387 5.92780 6.00998 6.10227 6.13276 6.19914 6.20957 6.34577 6.37365 6.46610 6.55262 6.60809 6.73106 6.84201 6.92176 6.94142 7.64737 7.85196 8.21621 8.33598 9.11006 9.22654 9.68297 10.36589 11.05254 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.007361 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.629068 B = 3802.875953 C = 5881.598135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.076 3.924 5 O -0.260 6.260 6 C 0.355 3.645 7 N -0.551 5.551 8 C 0.133 3.867 9 C -0.225 4.225 10 C -0.027 4.027 11 C -0.163 4.163 12 C 0.531 3.469 13 O -0.506 6.506 14 N -0.422 5.422 15 C -0.338 4.338 16 H 0.077 0.923 17 C 0.059 3.941 18 N -0.813 5.813 19 Si 0.911 3.089 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.278 1.278 23 C 0.075 3.925 24 C -0.174 4.174 25 C -0.210 4.210 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.152 0.848 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.264 0.736 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 -2.622 9.286 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.205 4.205 4 C 0.000 4.000 5 O -0.164 6.164 6 C 0.175 3.825 7 N -0.276 5.276 8 C -0.024 4.024 9 C -0.245 4.245 10 C -0.053 4.053 11 C -0.170 4.170 12 C 0.317 3.683 13 O -0.382 6.382 14 N -0.143 5.143 15 C -0.465 4.465 16 H 0.095 0.905 17 C -0.152 4.152 18 N -0.446 5.446 19 Si 0.738 3.262 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.204 1.204 23 C -0.032 4.032 24 C -0.212 4.212 25 C -0.249 4.249 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.324 -2.424 8.243 10.668 hybrid contribution 1.065 0.183 -0.369 1.142 sum -5.259 -2.242 7.873 9.730 Atomic orbital electron populations 1.21759 0.94589 1.01591 1.01916 1.21098 0.94822 0.97549 0.97815 1.21826 1.04102 0.94209 1.00344 1.22640 0.78957 0.99997 0.98377 1.86566 1.21483 1.70569 1.37751 1.19913 0.88521 0.88310 0.85781 1.67351 1.40598 1.16198 1.03472 1.22335 0.92826 0.93192 0.94017 1.21779 0.94899 1.06599 1.01266 1.21675 1.00598 0.92403 0.90600 1.20635 0.92038 1.05399 0.98879 1.17184 0.83015 0.81229 0.86841 1.90630 1.68371 1.57544 1.21613 1.42582 1.30396 1.39396 1.01881 1.18802 0.90607 1.38045 0.99044 0.90504 1.25296 0.95201 0.95253 0.99443 1.69873 1.05582 1.40046 1.29105 0.86304 0.79091 0.78774 0.82048 1.20229 1.21184 1.20356 1.21734 0.90170 1.02808 0.88448 1.23077 1.03706 0.91621 1.02811 1.23357 1.02485 0.98130 1.00916 0.92132 0.92774 0.92697 0.90091 0.93257 0.93669 0.89721 0.92332 0.92449 0.83043 0.84956 0.84082 0.92584 0.88162 0.87466 0.89865 0.89750 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 2 C -0.09 -1.51 3.16 -90.62 -0.29 -1.80 16 3 C -0.15 -2.51 9.09 37.16 0.34 -2.17 16 4 C 0.08 1.35 4.69 37.16 0.17 1.52 16 5 O -0.26 -5.86 8.85 -21.60 -0.19 -6.05 16 6 C 0.35 7.61 7.50 -16.59 -0.12 7.48 16 7 N -0.55 -10.00 9.21 -12.96 -0.12 -10.12 16 8 C 0.13 1.93 11.17 -17.47 -0.20 1.73 16 9 C -0.22 -3.13 10.09 -39.50 -0.40 -3.53 16 10 C -0.03 -0.46 7.92 -38.88 -0.31 -0.77 16 11 C -0.16 -3.58 4.91 -104.69 -0.51 -4.09 16 12 C 0.53 13.99 5.96 -12.52 -0.07 13.91 16 13 O -0.51 -15.42 14.33 1.64 0.02 -15.40 16 14 N -0.42 -10.63 2.86 -108.94 -0.31 -10.94 16 15 C -0.34 -9.14 7.97 -15.00 -0.12 -9.26 16 16 H 0.08 2.00 7.17 -52.49 -0.38 1.63 16 17 C 0.06 1.65 4.75 -17.45 -0.08 1.57 16 18 N -0.81 -23.64 11.01 55.50 0.61 -23.03 16 19 Si 0.91 21.66 29.56 -169.99 -5.03 16.63 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.07 1.51 4.65 -67.93 -0.32 1.19 16 24 C -0.17 -3.13 9.80 -26.73 -0.26 -3.39 16 25 C -0.21 -3.49 9.89 -26.73 -0.26 -3.76 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.81 7.82 -51.93 -0.41 1.40 16 33 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.14 2.25 6.88 -52.48 -0.36 1.88 16 38 H 0.26 7.45 8.32 -40.82 -0.34 7.12 16 39 H 0.10 1.94 6.47 -51.93 -0.34 1.60 16 40 H 0.11 2.11 6.71 -51.93 -0.35 1.77 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -33.08 356.85 -8.18 -41.27 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.46 Total: 5.01 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.09 Total: -2.74 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.18 Total: -44.10 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.17 Total: -21.45 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.08 -8.18 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263977286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.482 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds