Wall clock time and date at job start Tue Mar 31 2020 09:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 C 1.52997 * 109.47321 * 120.00101 * 2 1 3 5 5 O 1.42898 * 109.47397 * 175.00144 * 4 2 1 6 6 C 1.35432 * 117.00195 * 179.97438 * 5 4 2 7 7 N 1.32222 * 119.80109 * 0.02562 * 6 5 4 8 8 C 1.31896 * 121.80509 * 179.97438 * 7 6 5 9 9 C 1.38372 * 121.19788 * 359.97438 * 8 7 6 10 10 C 1.38320 * 119.46093 * 0.02562 * 9 8 7 11 11 C 1.40037 * 118.34783 * 359.74762 * 10 9 8 12 12 C 1.47420 * 120.60452 * 180.24891 * 11 10 9 13 13 O 1.21630 * 119.99959 * 126.85512 * 12 11 10 14 14 N 1.34781 * 120.00045 * 306.85341 * 12 11 10 15 15 C 1.36896 * 120.00060 * 185.81233 * 14 12 11 16 16 H 1.08000 * 119.99803 * 223.63465 * 15 14 12 17 17 C 1.39027 * 120.00389 * 43.63435 * 15 14 12 18 18 N 1.31378 * 119.99419 * 6.60316 * 17 15 14 19 19 Si 1.86793 * 120.00276 * 186.60173 * 17 15 14 20 20 H 1.48507 * 109.47003 * 60.00332 * 19 17 15 21 21 H 1.48506 * 109.47209 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47156 * 300.00130 * 19 17 15 23 23 C 1.46500 * 119.99542 * 5.81166 * 14 12 11 24 24 C 1.53002 * 117.49615 * 183.18965 * 23 14 12 25 25 C 1.52997 * 117.49655 * 114.57044 * 23 14 12 26 26 H 1.09005 * 109.47116 * 59.99758 * 1 2 3 27 27 H 1.09000 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47259 * 299.99756 * 1 2 3 29 29 H 1.08999 * 109.47259 * 240.00244 * 2 1 3 30 30 H 1.08998 * 109.47508 * 300.00424 * 3 2 1 31 31 H 1.08999 * 109.46873 * 60.00008 * 3 2 1 32 32 H 1.09004 * 109.47509 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46957 * 294.99973 * 4 2 1 34 34 H 1.08998 * 109.46781 * 54.99683 * 4 2 1 35 35 H 1.08001 * 119.40185 * 179.97438 * 8 7 6 36 36 H 1.07998 * 120.26623 * 180.02562 * 9 8 7 37 37 H 1.08006 * 120.82151 * 180.02562 * 10 9 8 38 38 H 0.97006 * 119.99834 * 184.99581 * 18 17 15 39 39 H 1.09003 * 115.55268 * 328.90057 * 23 14 12 40 40 H 1.08999 * 117.50030 * 0.02562 * 24 23 14 41 41 H 1.09004 * 117.49608 * 145.01811 * 24 23 14 42 42 H 1.09004 * 117.49988 * 214.97515 * 25 23 14 43 43 H 1.08997 * 117.50079 * 0.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4642 -0.8238 1.1920 6 6 4.0785 -1.4402 2.2297 7 7 3.3583 -1.9134 3.2325 8 6 3.9152 -2.5208 4.2624 9 6 5.2863 -2.6908 4.3386 10 6 6.0886 -2.2152 3.3172 11 6 5.4751 -1.5781 2.2315 12 6 6.2821 -1.0572 1.1132 13 8 6.0190 -1.3814 -0.0292 14 7 7.3113 -0.2217 1.3566 15 6 7.9854 0.3557 0.3144 16 1 9.0643 0.4036 0.3295 17 6 7.2814 0.8805 -0.7635 18 7 5.9695 0.9401 -0.7247 19 14 8.2005 1.5006 -2.2667 20 1 8.9875 0.3893 -2.8592 21 1 7.2275 2.0063 -3.2682 22 1 9.1173 2.5988 -1.8682 23 6 7.7085 0.0685 2.7365 24 6 8.8349 1.0818 2.9491 25 6 9.0904 -0.4075 3.1888 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.7517 -0.1583 2.1369 34 1 1.6054 -1.7197 1.2951 35 1 3.2897 -2.8921 5.0607 36 1 5.7263 -3.1908 5.1888 37 1 7.1612 -2.3364 3.3539 38 1 5.4743 1.2383 -1.5037 39 1 6.9038 0.0483 3.4715 40 1 9.2802 1.5329 2.0624 41 1 8.7714 1.7288 3.8241 42 1 9.1950 -0.7405 4.2214 43 1 9.7042 -0.9362 2.4595 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263977286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:45 Heat of formation + Delta-G solvation = -18.963832 kcal Electronic energy + Delta-G solvation = -26108.447801 eV Core-core repulsion = 22540.817455 eV Total energy + Delta-G solvation = -3567.630346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69785 -40.04754 -39.03582 -37.65579 -36.18000 -34.75043 -33.63181 -32.53370 -31.35540 -28.06486 -27.64218 -27.13020 -25.08079 -23.85666 -23.12434 -22.70737 -21.53157 -21.09839 -19.36474 -18.65702 -17.94123 -17.68132 -17.16177 -16.63620 -16.27687 -15.86143 -15.73966 -15.41483 -15.08266 -15.04414 -14.59831 -14.34862 -14.03644 -13.87124 -13.74763 -13.47511 -13.11955 -13.02161 -12.88941 -12.78947 -12.63757 -12.28427 -12.21801 -12.12017 -12.02698 -11.68216 -11.65049 -11.58014 -11.27533 -10.78896 -10.76903 -10.61880 -9.90863 -9.29073 -8.93562 -8.02480 -5.95303 0.07775 0.37797 1.37491 1.43786 1.48095 2.17351 2.29510 2.46912 2.84917 3.09961 3.17536 3.41955 3.46215 3.78984 3.87290 4.01846 4.04340 4.09876 4.12591 4.23534 4.29323 4.38719 4.47892 4.51256 4.56937 4.64942 4.70889 4.75610 4.88962 4.92127 4.99183 5.03429 5.09574 5.16091 5.26174 5.28915 5.32559 5.44087 5.47526 5.53900 5.62451 6.22676 6.47573 6.89835 7.08495 7.27974 7.71539 8.43312 8.96182 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.007361 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.629068 B = 3802.875953 C = 5881.598135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.139 4.139 4 C 0.077 3.923 5 O -0.301 6.301 6 C 0.328 3.672 7 N -0.556 5.556 8 C 0.140 3.860 9 C -0.200 4.200 10 C -0.021 4.021 11 C -0.206 4.206 12 C 0.523 3.477 13 O -0.571 6.571 14 N -0.436 5.436 15 C -0.349 4.349 16 H 0.080 0.920 17 C 0.004 3.996 18 N -0.844 5.844 19 Si 0.970 3.030 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.257 1.257 23 C 0.043 3.957 24 C -0.172 4.172 25 C -0.174 4.174 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.204 0.796 36 H 0.187 0.813 37 H 0.153 0.847 38 H 0.254 0.746 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.130 0.870 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -3.452 12.965 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 C -0.196 4.196 4 C 0.002 3.998 5 O -0.207 6.207 6 C 0.150 3.850 7 N -0.282 5.282 8 C -0.016 4.016 9 C -0.220 4.220 10 C -0.047 4.047 11 C -0.213 4.213 12 C 0.312 3.688 13 O -0.451 6.451 14 N -0.156 5.156 15 C -0.477 4.477 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.478 5.478 19 Si 0.795 3.205 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.182 1.182 23 C -0.062 4.062 24 C -0.210 4.210 25 C -0.212 4.212 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.221 0.779 36 H 0.204 0.796 37 H 0.170 0.830 38 H 0.063 0.937 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.134 0.866 42 H 0.148 0.852 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.354 -3.233 11.971 13.933 hybrid contribution 1.121 0.342 -1.311 1.758 sum -5.233 -2.891 10.661 12.223 Atomic orbital electron populations 1.21692 0.90855 1.02884 1.03304 1.21142 0.97717 0.96167 0.96164 1.21706 1.00541 0.95565 1.01784 1.22804 0.77334 1.00519 0.99160 1.86533 1.23622 1.71312 1.39224 1.20064 0.88652 0.89634 0.86674 1.67449 1.40458 1.16621 1.03631 1.23345 0.94160 0.90640 0.93484 1.22304 0.94278 1.04297 1.01105 1.21886 1.01555 0.91342 0.89899 1.20430 0.92159 1.08912 0.99789 1.17899 0.83088 0.80464 0.87391 1.90554 1.70102 1.59933 1.24520 1.42773 1.30254 1.38894 1.03677 1.19057 0.90927 1.37381 1.00293 0.90207 1.26171 0.95935 0.95827 1.02390 1.70055 1.06929 1.41712 1.29090 0.85381 0.77953 0.78495 0.78654 1.20588 1.21647 1.18177 1.21912 0.91948 1.06263 0.86040 1.23145 1.01874 0.92860 1.03109 1.23381 0.98349 0.96733 1.02775 0.90801 0.91550 0.91196 0.92774 0.91772 0.92131 0.95060 0.91683 0.91852 0.77937 0.79590 0.82966 0.93703 0.87267 0.89903 0.86648 0.85185 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.19 71.98 0.66 -2.37 16 2 C -0.09 -3.14 3.16 -10.79 -0.03 -3.18 16 3 C -0.14 -5.00 9.09 71.98 0.65 -4.35 16 4 C 0.08 2.84 4.69 71.98 0.34 3.17 16 5 O -0.30 -14.57 8.85 -83.83 -0.74 -15.31 16 6 C 0.33 14.48 7.50 85.15 0.64 15.12 16 7 N -0.56 -19.41 9.21 -307.93 -2.84 -22.24 16 8 C 0.14 3.46 11.17 84.72 0.95 4.41 16 9 C -0.20 -4.60 10.09 22.32 0.23 -4.37 16 10 C -0.02 -0.68 7.92 22.73 0.18 -0.50 16 11 C -0.21 -9.29 4.91 -19.91 -0.10 -9.39 16 12 C 0.52 29.14 5.96 86.66 0.52 29.66 16 13 O -0.57 -37.56 14.33 -0.67 -0.01 -37.57 16 14 N -0.44 -22.86 2.86 -616.81 -1.77 -24.63 16 15 C -0.35 -19.74 7.97 84.09 0.67 -19.07 16 16 H 0.08 4.31 7.17 -2.91 -0.02 4.29 16 17 C 0.00 0.23 4.75 84.95 0.40 0.63 16 18 N -0.84 -52.86 11.01 21.68 0.24 -52.62 16 19 Si 0.97 46.69 29.56 68.60 2.03 48.72 16 20 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 23 C 0.04 1.73 4.65 44.99 0.21 1.94 16 24 C -0.17 -5.92 9.80 30.59 0.30 -5.62 16 25 C -0.17 -5.33 9.89 30.59 0.30 -5.03 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.03 1.45 7.82 -2.38 -0.02 1.43 16 33 H 0.06 2.23 8.10 -2.39 -0.02 2.22 16 34 H 0.06 2.18 8.10 -2.39 -0.02 2.16 16 35 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 36 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.15 4.46 6.88 -2.91 -0.02 4.44 16 38 H 0.25 15.63 8.32 -92.70 -0.77 14.85 16 39 H 0.11 4.11 6.47 -2.39 -0.02 4.09 16 40 H 0.08 3.27 6.71 -2.39 -0.02 3.25 16 41 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 42 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -82.31 356.85 3.83 -78.49 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 1.00 Total: 24.11 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.91 Total: 1.06 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -4.36 Total: -99.49 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.75 Total: -52.88 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -82.31 3.83 -78.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263977286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.521 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds