Wall clock time and date at job start Tue Mar 31 2020 10:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47518 * 2 1 4 4 H 1.08999 * 110.91380 * 51.09398 * 3 2 1 5 5 C 1.55151 * 111.00987 * 175.00147 * 3 2 1 6 6 C 1.54321 * 102.94537 * 153.57756 * 5 3 2 7 7 N 1.47028 * 107.26871 * 337.80950 * 6 5 3 8 8 C 1.34772 * 125.64575 * 178.89757 * 7 6 5 9 9 O 1.21587 * 119.99978 * 180.02562 * 8 7 6 10 10 N 1.34781 * 120.00046 * 0.02562 * 8 7 6 11 11 C 1.39942 * 119.99640 * 174.74003 * 10 8 7 12 12 C 1.38954 * 120.03871 * 326.17681 * 11 10 8 13 13 C 1.38162 * 120.06665 * 179.72284 * 12 11 10 14 14 C 1.38165 * 120.14143 * 0.55661 * 13 12 11 15 15 C 1.38910 * 120.06447 * 359.72035 * 14 13 12 16 16 O 1.35756 * 120.03189 * 179.97438 * 15 14 13 17 17 C 1.34834 * 116.99964 * 185.92707 * 16 15 14 18 18 H 1.07995 * 120.00038 * 5.40867 * 17 16 15 19 19 C 1.38654 * 119.99846 * 185.40309 * 17 16 15 20 20 N 1.31555 * 119.99921 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47393 * 90.00158 * 21 19 17 23 23 H 1.48501 * 109.46896 * 210.00174 * 21 19 17 24 24 H 1.48498 * 109.47398 * 329.99787 * 21 19 17 25 25 C 1.38706 * 120.03348 * 146.45738 * 11 10 8 26 26 C 1.47426 * 108.70339 * 358.93968 * 7 6 5 27 27 H 1.09000 * 109.46927 * 299.99577 * 1 2 3 28 28 H 1.08995 * 109.47143 * 59.99543 * 1 2 3 29 29 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46927 * 240.00423 * 2 1 3 31 31 H 1.08995 * 109.47143 * 120.00457 * 2 1 3 32 32 H 1.09006 * 110.71702 * 35.21721 * 5 3 2 33 33 H 1.08996 * 110.72333 * 271.94334 * 5 3 2 34 34 H 1.09000 * 109.88321 * 97.22227 * 6 5 3 35 35 H 1.08997 * 109.88376 * 218.39398 * 6 5 3 36 36 H 0.96994 * 120.00204 * 354.74028 * 10 8 7 37 37 H 1.08001 * 119.96819 * 359.97438 * 12 11 10 38 38 H 1.08007 * 119.92981 * 180.25540 * 13 12 11 39 39 H 1.07995 * 119.97034 * 179.74853 * 14 13 12 40 40 H 0.96997 * 119.99981 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.07088 * 359.97334 * 25 11 10 42 42 H 1.08996 * 110.36364 * 265.28902 * 26 7 6 43 43 H 1.08997 * 110.45554 * 143.01624 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5669 2.0225 0.7923 5 6 3.5859 1.4858 0.1262 6 6 3.9509 2.8218 -0.5545 7 7 2.8409 3.1715 -1.4530 8 6 2.7669 4.2806 -2.2150 9 8 1.7965 4.4679 -2.9233 10 7 3.7685 5.1822 -2.1920 11 6 3.7443 6.2772 -3.0632 12 6 3.1971 6.1435 -4.3334 13 6 3.1678 7.2257 -5.1919 14 6 3.6924 8.4406 -4.7948 15 6 4.2460 8.5791 -3.5283 16 8 4.7618 9.7730 -3.1391 17 6 5.3927 9.8081 -1.9480 18 1 5.5466 8.8956 -1.3913 19 6 5.8442 11.0158 -1.4380 20 7 5.6565 12.1275 -2.1160 21 14 6.7190 11.0644 0.2118 22 1 8.1790 10.8908 0.0033 23 1 6.4647 12.3717 0.8685 24 1 6.2086 9.9692 1.0751 25 6 4.2718 7.4956 -2.6616 26 6 1.8219 2.1085 -1.3815 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.0396 0.6472 -0.4021 33 1 3.8873 1.4917 1.1736 34 1 4.0770 3.5994 0.1989 35 1 4.8702 2.7064 -1.1286 36 1 4.5059 5.0721 -1.5717 37 1 2.7907 5.1938 -4.6485 38 1 2.7382 7.1204 -6.1772 39 1 3.6717 9.2836 -5.4695 40 1 5.9726 12.9723 -1.7594 41 1 4.7014 7.6009 -1.6763 42 1 1.9739 1.3831 -2.1806 43 1 0.8210 2.5355 -1.4430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268033294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:00 Heat of formation + Delta-G solvation = -31.710773 kcal Electronic energy + Delta-G solvation = -24279.012582 eV Core-core repulsion = 20710.829488 eV Total energy + Delta-G solvation = -3568.183094 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.59827 -39.08799 -38.09973 -36.32198 -34.47329 -33.94141 -32.21182 -30.84368 -29.38567 -28.69973 -28.00747 -25.32162 -24.64927 -22.65087 -21.76266 -21.73587 -20.52582 -19.70555 -18.45342 -17.83983 -17.21379 -16.53631 -15.65499 -15.32572 -15.07160 -14.89377 -14.54332 -14.18214 -13.94681 -13.87801 -13.63603 -13.56401 -13.05393 -13.02169 -12.91787 -12.78688 -12.31470 -12.15468 -11.73651 -11.58108 -11.50672 -11.12481 -11.08457 -11.01492 -10.92877 -10.88641 -10.78062 -10.44828 -9.99784 -9.62761 -9.43182 -8.80000 -8.75087 -7.66494 -7.09921 -6.42905 -4.02441 2.09363 2.42749 2.58683 3.11989 3.12720 3.17602 3.32281 3.89452 3.97276 4.22371 4.22934 4.39167 4.64788 4.79275 4.85683 4.98587 5.04135 5.12276 5.15584 5.30585 5.31672 5.42159 5.44313 5.58025 5.63071 5.63540 5.70083 5.73470 5.86725 5.96274 6.04622 6.06303 6.13004 6.30064 6.35698 6.63286 6.88995 7.04533 7.14446 7.29065 7.38122 7.46276 7.86439 7.99781 8.02020 8.65605 9.02542 9.73849 10.75346 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.003144 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.644840 B = 8904.055248 C =10177.966040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.086 0.914 5 C -0.125 4.125 6 C 0.095 3.905 7 N -0.639 5.639 8 C 0.721 3.279 9 O -0.568 6.568 10 N -0.680 5.680 11 C 0.199 3.801 12 C -0.205 4.205 13 C -0.062 4.062 14 C -0.202 4.202 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.089 0.911 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.258 4.258 26 C 0.131 3.869 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.401 0.599 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -23.032 5.933 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.104 0.896 5 C -0.163 4.163 6 C -0.028 4.028 7 N -0.378 5.378 8 C 0.424 3.576 9 O -0.444 6.444 10 N -0.326 5.326 11 C 0.105 3.895 12 C -0.226 4.226 13 C -0.081 4.081 14 C -0.222 4.222 15 C 0.115 3.885 16 O -0.080 6.080 17 C -0.467 4.467 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.280 4.280 26 C 0.008 3.992 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.236 0.764 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.146 0.854 42 H 0.084 0.916 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.331 -22.380 5.293 23.401 hybrid contribution 0.880 -0.021 1.348 1.610 sum -3.451 -22.401 6.641 23.618 Atomic orbital electron populations 1.21814 0.95509 1.01760 1.02267 1.21450 0.96209 0.94818 1.02398 1.22471 0.95583 0.96867 0.97421 0.89569 1.22669 0.95727 0.96546 1.01323 1.22045 0.90294 0.97440 0.93055 1.47573 1.22576 1.21362 1.46277 1.15396 0.83049 0.78900 0.80304 1.90950 1.32405 1.76909 1.44163 1.42594 1.24581 1.24609 1.40854 1.17190 0.98617 0.85022 0.88629 1.20563 1.09078 0.99946 0.93011 1.20522 0.97381 0.91887 0.98305 1.20235 1.07970 0.98502 0.95524 1.19062 0.91031 0.86033 0.92350 1.84024 1.62258 1.25304 1.36442 1.21257 1.34723 0.95131 0.95638 0.89325 1.25268 0.97658 0.94162 0.99433 1.70035 1.43614 0.98387 1.37748 0.85733 0.79285 0.78202 0.80292 1.19917 1.20276 1.19343 1.20770 1.13433 0.91758 1.01999 1.22130 0.92393 0.88338 0.96334 0.92605 0.92355 0.92647 0.91553 0.91445 0.90328 0.89894 0.91466 0.91398 0.76377 0.86302 0.86633 0.86391 0.92054 0.85357 0.91649 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.82 37.16 0.36 -0.54 16 2 C -0.11 -0.61 5.45 -26.73 -0.15 -0.76 16 3 C -0.10 -0.73 3.01 -88.48 -0.27 -1.00 16 4 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.12 -0.77 6.42 -24.90 -0.16 -0.93 16 6 C 0.09 0.82 6.16 -3.06 -0.02 0.80 16 7 N -0.64 -7.86 3.33 -176.24 -0.59 -8.45 16 8 C 0.72 12.05 8.22 -86.92 -0.71 11.34 16 9 O -0.57 -11.61 14.32 5.29 0.08 -11.53 16 10 N -0.68 -11.25 5.29 -14.24 -0.08 -11.32 16 11 C 0.20 4.01 6.27 -83.72 -0.52 3.49 16 12 C -0.20 -4.14 8.65 -39.34 -0.34 -4.48 16 13 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 14 C -0.20 -4.46 9.99 -39.36 -0.39 -4.85 16 15 C 0.17 4.19 6.64 -39.13 -0.26 3.93 16 16 O -0.18 -5.09 9.76 0.02 0.00 -5.09 16 17 C -0.39 -10.93 9.44 30.89 0.29 -10.64 16 18 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 21 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 C -0.26 -5.75 9.04 -39.21 -0.35 -6.10 16 26 C 0.13 1.33 5.86 -2.53 -0.01 1.32 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.38 7.75 -51.93 -0.40 -0.02 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.36 7.96 -51.93 -0.41 -0.06 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.43 8.04 -51.93 -0.42 0.01 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.40 5.42 7.80 -40.82 -0.32 5.10 16 37 H 0.12 2.38 6.45 -52.49 -0.34 2.04 16 38 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 39 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.13 2.81 5.72 -52.48 -0.30 2.51 16 42 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 43 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -33.83 354.08 -8.78 -42.61 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.23 Total: 6.75 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.03 Total: -9.07 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.10 Total: -44.42 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.08 Total: -16.62 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.83 -8.78 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268033294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.902 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds