Wall clock time and date at job start Tue Mar 31 2020 10:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47518 * 2 1 4 4 H 1.08999 * 110.91380 * 51.09398 * 3 2 1 5 5 C 1.55151 * 111.00987 * 175.00147 * 3 2 1 6 6 C 1.54321 * 102.94537 * 153.57756 * 5 3 2 7 7 N 1.47028 * 107.26871 * 337.80950 * 6 5 3 8 8 C 1.34772 * 125.64575 * 178.89757 * 7 6 5 9 9 O 1.21587 * 119.99978 * 180.02562 * 8 7 6 10 10 N 1.34781 * 120.00046 * 0.02562 * 8 7 6 11 11 C 1.39942 * 119.99640 * 174.74003 * 10 8 7 12 12 C 1.38954 * 120.03871 * 326.17681 * 11 10 8 13 13 C 1.38162 * 120.06665 * 179.72284 * 12 11 10 14 14 C 1.38165 * 120.14143 * 0.55661 * 13 12 11 15 15 C 1.38910 * 120.06447 * 359.72035 * 14 13 12 16 16 O 1.35756 * 120.03189 * 179.97438 * 15 14 13 17 17 C 1.34834 * 116.99964 * 185.92707 * 16 15 14 18 18 H 1.07995 * 120.00038 * 5.40867 * 17 16 15 19 19 C 1.38654 * 119.99846 * 185.40309 * 17 16 15 20 20 N 1.31555 * 119.99921 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47393 * 90.00158 * 21 19 17 23 23 H 1.48501 * 109.46896 * 210.00174 * 21 19 17 24 24 H 1.48498 * 109.47398 * 329.99787 * 21 19 17 25 25 C 1.38706 * 120.03348 * 146.45738 * 11 10 8 26 26 C 1.47426 * 108.70339 * 358.93968 * 7 6 5 27 27 H 1.09000 * 109.46927 * 299.99577 * 1 2 3 28 28 H 1.08995 * 109.47143 * 59.99543 * 1 2 3 29 29 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46927 * 240.00423 * 2 1 3 31 31 H 1.08995 * 109.47143 * 120.00457 * 2 1 3 32 32 H 1.09006 * 110.71702 * 35.21721 * 5 3 2 33 33 H 1.08996 * 110.72333 * 271.94334 * 5 3 2 34 34 H 1.09000 * 109.88321 * 97.22227 * 6 5 3 35 35 H 1.08997 * 109.88376 * 218.39398 * 6 5 3 36 36 H 0.96994 * 120.00204 * 354.74028 * 10 8 7 37 37 H 1.08001 * 119.96819 * 359.97438 * 12 11 10 38 38 H 1.08007 * 119.92981 * 180.25540 * 13 12 11 39 39 H 1.07995 * 119.97034 * 179.74853 * 14 13 12 40 40 H 0.96997 * 119.99981 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.07088 * 359.97334 * 25 11 10 42 42 H 1.08996 * 110.36364 * 265.28902 * 26 7 6 43 43 H 1.08997 * 110.45554 * 143.01624 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5669 2.0225 0.7923 5 6 3.5859 1.4858 0.1262 6 6 3.9509 2.8218 -0.5545 7 7 2.8409 3.1715 -1.4530 8 6 2.7669 4.2806 -2.2150 9 8 1.7965 4.4679 -2.9233 10 7 3.7685 5.1822 -2.1920 11 6 3.7443 6.2772 -3.0632 12 6 3.1971 6.1435 -4.3334 13 6 3.1678 7.2257 -5.1919 14 6 3.6924 8.4406 -4.7948 15 6 4.2460 8.5791 -3.5283 16 8 4.7618 9.7730 -3.1391 17 6 5.3927 9.8081 -1.9480 18 1 5.5466 8.8956 -1.3913 19 6 5.8442 11.0158 -1.4380 20 7 5.6565 12.1275 -2.1160 21 14 6.7190 11.0644 0.2118 22 1 8.1790 10.8908 0.0033 23 1 6.4647 12.3717 0.8685 24 1 6.2086 9.9692 1.0751 25 6 4.2718 7.4956 -2.6616 26 6 1.8219 2.1085 -1.3815 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.0396 0.6472 -0.4021 33 1 3.8873 1.4917 1.1736 34 1 4.0770 3.5994 0.1989 35 1 4.8702 2.7064 -1.1286 36 1 4.5059 5.0721 -1.5717 37 1 2.7907 5.1938 -4.6485 38 1 2.7382 7.1204 -6.1772 39 1 3.6717 9.2836 -5.4695 40 1 5.9726 12.9723 -1.7594 41 1 4.7014 7.6009 -1.6763 42 1 1.9739 1.3831 -2.1806 43 1 0.8210 2.5355 -1.4430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268033294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:00 Heat of formation + Delta-G solvation = -52.796087 kcal Electronic energy + Delta-G solvation = -24279.926910 eV Core-core repulsion = 20710.829488 eV Total energy + Delta-G solvation = -3569.097422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85879 -40.63995 -39.31738 -37.98393 -35.76817 -34.91882 -34.20787 -31.67871 -30.92741 -30.17176 -28.99253 -27.30165 -25.57983 -23.53759 -23.39432 -23.02592 -21.21101 -21.02766 -19.87476 -19.50786 -18.81001 -17.54083 -17.09258 -16.80461 -16.47644 -16.27512 -15.80684 -15.69982 -15.51814 -15.14993 -14.59851 -14.53931 -14.32369 -14.20196 -13.99348 -13.65053 -13.57774 -13.38050 -13.20679 -12.85563 -12.70336 -12.59624 -12.48627 -12.11941 -12.05993 -11.60842 -11.56174 -11.51971 -11.42781 -11.37269 -11.13511 -10.73480 -9.81230 -9.32743 -8.85058 -8.45944 -6.14727 0.43042 0.69491 1.35981 1.40444 1.45899 1.53705 1.97041 2.18415 2.81837 2.84610 3.17258 3.48754 3.52646 3.62090 3.85360 4.10060 4.23506 4.32004 4.35892 4.36242 4.43659 4.51220 4.53789 4.62478 4.63859 4.71200 4.84280 4.90871 4.99874 5.01481 5.06822 5.11124 5.13185 5.21707 5.23809 5.38927 5.41621 5.47795 5.53453 5.66671 5.66896 5.94356 6.01998 6.18406 6.76186 6.98245 7.35313 7.77651 8.77153 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.003144 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.644840 B = 8904.055248 C =10177.966040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C -0.095 4.095 4 H 0.082 0.918 5 C -0.114 4.114 6 C 0.084 3.916 7 N -0.633 5.633 8 C 0.715 3.285 9 O -0.612 6.612 10 N -0.672 5.672 11 C 0.205 3.795 12 C -0.201 4.201 13 C -0.049 4.049 14 C -0.214 4.214 15 C 0.137 3.863 16 O -0.225 6.225 17 C -0.413 4.413 18 H 0.103 0.897 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.019 2.981 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.252 1.252 25 C -0.260 4.260 26 C 0.124 3.876 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.416 0.584 37 H 0.126 0.874 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.273 0.727 41 H 0.129 0.871 42 H 0.071 0.929 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 -26.208 7.639 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.114 4.114 4 H 0.101 0.899 5 C -0.152 4.152 6 C -0.038 4.038 7 N -0.370 5.370 8 C 0.417 3.583 9 O -0.491 6.491 10 N -0.320 5.320 11 C 0.110 3.890 12 C -0.222 4.222 13 C -0.068 4.068 14 C -0.234 4.234 15 C 0.085 3.915 16 O -0.131 6.131 17 C -0.489 4.489 18 H 0.120 0.880 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.838 3.162 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.175 1.175 25 C -0.282 4.282 26 C 0.001 3.999 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.254 0.746 37 H 0.144 0.856 38 H 0.172 0.828 39 H 0.139 0.861 40 H 0.082 0.918 41 H 0.146 0.854 42 H 0.090 0.910 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.728 -25.657 7.028 26.862 hybrid contribution 0.550 0.709 0.696 1.135 sum -3.178 -24.948 7.724 26.309 Atomic orbital electron populations 1.21834 0.96039 1.02113 1.01603 1.21432 0.95699 0.93726 1.03436 1.22428 0.96554 0.97435 0.94977 0.89922 1.22695 0.94621 0.95361 1.02507 1.22389 0.89417 0.99149 0.92841 1.47661 1.24078 1.20032 1.45262 1.15565 0.82360 0.79724 0.80611 1.90911 1.33915 1.78083 1.46225 1.42443 1.25272 1.23668 1.40609 1.17208 0.97302 0.85308 0.89210 1.20841 1.07971 1.00356 0.93000 1.20905 0.95725 0.90392 0.99756 1.20473 1.08263 0.99785 0.94886 1.19571 0.92169 0.85860 0.93867 1.83991 1.64293 1.27433 1.37394 1.21801 1.35186 0.96132 0.95803 0.88017 1.26606 0.98287 0.93351 1.03791 1.70187 1.45993 0.99266 1.40333 0.84582 0.78178 0.78705 0.74715 1.18635 1.19850 1.17503 1.20770 1.13741 0.92005 1.01724 1.22350 0.90922 0.87813 0.98783 0.92740 0.93609 0.91803 0.91080 0.89744 0.88925 0.87747 0.90835 0.90280 0.74600 0.85592 0.82772 0.86053 0.91830 0.85368 0.91034 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.82 71.98 0.71 -0.86 16 2 C -0.11 -0.85 5.45 30.59 0.17 -0.69 16 3 C -0.09 -1.08 3.01 -9.41 -0.03 -1.11 16 4 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 5 C -0.11 -0.97 6.42 31.78 0.20 -0.77 16 6 C 0.08 1.20 6.16 86.73 0.53 1.73 16 7 N -0.63 -14.51 3.33 -829.76 -2.76 -17.27 16 8 C 0.71 23.15 8.22 179.05 1.47 24.63 16 9 O -0.61 -24.75 14.32 -3.99 -0.06 -24.81 16 10 N -0.67 -21.40 5.29 -317.23 -1.68 -23.08 16 11 C 0.20 8.12 6.27 38.13 0.24 8.36 16 12 C -0.20 -7.85 8.65 22.42 0.19 -7.66 16 13 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 14 C -0.21 -9.54 9.99 22.41 0.22 -9.31 16 15 C 0.14 6.97 6.64 22.56 0.15 7.12 16 16 O -0.22 -13.56 9.76 -22.85 -0.22 -13.79 16 17 C -0.41 -23.84 9.44 67.92 0.64 -23.20 16 18 H 0.10 5.33 5.30 -2.91 -0.02 5.31 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 20 N -0.92 -56.32 13.67 21.61 0.30 -56.03 16 21 Si 1.02 42.12 29.55 68.60 2.03 44.15 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 25 C -0.26 -11.73 9.04 22.51 0.20 -11.53 16 26 C 0.12 2.34 5.86 86.85 0.51 2.85 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 0.56 7.75 -2.39 -0.02 0.54 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.54 7.96 -2.39 -0.02 0.52 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.59 8.04 -2.38 -0.02 0.57 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.42 10.52 7.80 -92.71 -0.72 9.80 16 37 H 0.13 4.85 6.45 -2.91 -0.02 4.83 16 38 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.12 5.21 8.06 -2.91 -0.02 5.18 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.13 5.67 5.72 -2.91 -0.02 5.65 16 42 H 0.07 1.27 7.91 -2.39 -0.02 1.25 16 43 H 0.06 1.33 8.04 -2.39 -0.02 1.31 16 Total: -1.00 -77.13 354.08 3.81 -73.32 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.30 Total: 30.40 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.91 Total: -12.90 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -4.14 Total: -96.38 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.28 Total: -38.59 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -77.13 3.81 -73.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268033294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.528 kcal (2) G-P(sol) polarization free energy of solvation -77.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds