Wall clock time and date at job start Tue Mar 31 2020 09:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47104 * 2 1 4 4 C 1.53002 * 109.47741 * 119.99902 * 2 1 3 5 5 N 1.46497 * 109.47226 * 174.99708 * 4 2 1 6 6 C 1.46500 * 120.00389 * 269.99990 * 5 4 2 7 7 C 1.50700 * 109.47084 * 279.21253 * 6 5 4 8 8 N 1.34782 * 119.99788 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00172 * 359.97438 * 7 6 5 10 10 C 1.34779 * 119.99388 * 90.00385 * 5 4 2 11 11 O 1.21582 * 120.00356 * 6.43624 * 10 5 4 12 12 C 1.47641 * 119.99724 * 186.43249 * 10 5 4 13 13 C 1.40017 * 119.89820 * 149.30263 * 12 10 5 14 14 C 1.36316 * 120.11127 * 180.25782 * 13 12 10 15 15 C 1.40886 * 119.88793 * 359.51981 * 14 13 12 16 16 C 1.41110 * 120.10022 * 180.23496 * 15 14 13 17 17 H 1.07995 * 119.99753 * 209.58231 * 16 15 14 18 18 C 1.40228 * 120.00043 * 29.58111 * 16 15 14 19 19 N 1.30640 * 120.00101 * 10.60406 * 18 16 15 20 20 Si 1.86803 * 119.99778 * 190.60987 * 18 16 15 21 21 H 1.48499 * 109.47135 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47143 * 119.99806 * 20 18 16 23 23 H 1.48500 * 109.46863 * 239.99834 * 20 18 16 24 24 C 1.40882 * 119.79493 * 0.49787 * 15 14 13 25 25 C 1.36315 * 119.89264 * 359.73253 * 24 15 14 26 26 H 1.08999 * 109.47309 * 299.99669 * 1 2 3 27 27 H 1.08993 * 109.47566 * 60.00538 * 1 2 3 28 28 H 1.09002 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47359 * 240.00139 * 2 1 3 30 30 H 1.09002 * 109.46879 * 300.00500 * 3 2 1 31 31 H 1.08995 * 109.47120 * 59.99637 * 3 2 1 32 32 H 1.09000 * 109.47422 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46501 * 55.00187 * 4 2 1 34 34 H 1.08993 * 109.47036 * 295.00734 * 4 2 1 35 35 H 1.08996 * 109.46890 * 39.21722 * 6 5 4 36 36 H 1.09000 * 109.46836 * 159.21410 * 6 5 4 37 37 H 0.96999 * 120.00051 * 359.97438 * 8 7 6 38 38 H 0.96994 * 119.99909 * 180.02562 * 8 7 6 39 39 H 1.08001 * 119.94301 * 359.97438 * 13 12 10 40 40 H 1.08002 * 120.05321 * 179.72435 * 14 13 12 41 41 H 0.97004 * 120.00122 * 179.97438 * 19 18 16 42 42 H 1.08008 * 120.05554 * 179.71432 * 24 15 14 43 43 H 1.08000 * 119.94730 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.1366 -3.1428 1.5338 8 7 4.6678 -4.3271 1.1707 9 8 3.6681 -3.0031 2.6437 10 6 4.2676 0.1493 1.7154 11 8 3.7538 1.0572 2.3399 12 6 5.7322 0.1155 1.5323 13 6 6.4552 1.3127 1.4668 14 6 7.8069 1.2867 1.2925 15 6 8.4777 0.0521 1.1884 16 6 9.8775 0.0198 1.0129 17 1 10.3357 -0.7981 0.4769 18 6 10.6734 1.0497 1.5346 19 7 10.1548 1.9247 2.3544 20 14 12.4754 1.1706 1.0571 21 1 12.8150 0.0672 0.1231 22 1 12.7253 2.4755 0.3941 23 1 13.3183 1.0646 2.2751 24 6 7.7459 -1.1499 1.2545 25 6 6.3938 -1.1137 1.4242 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6055 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.5604 -2.2723 -0.3275 36 1 5.1493 -1.7460 0.2778 37 1 5.0428 -4.4387 0.2832 38 1 4.6744 -5.0680 1.7967 39 1 5.9405 2.2586 1.5499 40 1 8.3631 2.2108 1.2377 41 1 10.7055 2.6369 2.7156 42 1 8.2553 -2.0987 1.1706 43 1 5.8319 -2.0347 1.4746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270242223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:14 Heat of formation + Delta-G solvation = -41.491741 kcal Electronic energy + Delta-G solvation = -25434.095794 eV Core-core repulsion = 21865.488565 eV Total energy + Delta-G solvation = -3568.607229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.37823 -38.63832 -37.40009 -35.88762 -34.32232 -33.59604 -33.54779 -30.19247 -29.83293 -27.86043 -26.99140 -26.65104 -24.96994 -21.75726 -21.22998 -20.99767 -19.99593 -18.90706 -17.71239 -17.33808 -16.85677 -16.33604 -15.83737 -15.43479 -15.04295 -14.77353 -14.45054 -14.05894 -13.66364 -13.53249 -13.37769 -12.97298 -12.65613 -12.46882 -12.37955 -12.09249 -11.89987 -11.71595 -11.56613 -11.40986 -11.24160 -11.11086 -10.79486 -10.77065 -10.60726 -10.51856 -10.05210 -9.95171 -9.66183 -9.50733 -9.42397 -8.91240 -8.25332 -7.71887 -7.51906 -6.94737 -4.61693 2.23262 2.64904 2.90254 2.95732 2.97256 3.01347 3.26964 3.60109 3.76885 3.93076 4.52287 4.89691 4.99140 5.05806 5.12445 5.26574 5.40310 5.42111 5.62801 5.69035 5.77438 5.79130 5.92247 6.01454 6.07871 6.13944 6.20512 6.22481 6.44167 6.63814 6.75392 6.78884 6.83023 6.93104 6.99815 7.08566 7.31722 7.41262 7.54147 7.73070 7.84027 7.99781 8.09122 8.32011 8.42228 8.63452 8.72925 8.99391 9.97272 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.004013 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.340397 B = 6975.879027 C = 7964.259695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.140 4.140 4 C 0.126 3.874 5 N -0.598 5.598 6 C 0.061 3.939 7 C 0.496 3.504 8 N -0.858 5.858 9 O -0.529 6.529 10 C 0.580 3.420 11 O -0.553 6.553 12 C -0.271 4.271 13 C -0.041 4.041 14 C -0.170 4.170 15 C 0.127 3.873 16 C -0.448 4.448 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.780 5.780 20 Si 0.915 3.085 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.227 4.227 25 C -0.081 4.081 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.402 0.598 38 H 0.399 0.601 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.285 0.715 42 H 0.098 0.902 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 -7.781 -8.058 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.003 3.997 5 N -0.330 5.330 6 C -0.067 4.067 7 C 0.279 3.721 8 N -0.423 5.423 9 O -0.404 6.404 10 C 0.375 3.625 11 O -0.432 6.432 12 C -0.275 4.275 13 C -0.061 4.061 14 C -0.189 4.189 15 C 0.124 3.876 16 C -0.477 4.477 17 H 0.101 0.899 18 C -0.149 4.149 19 N -0.403 5.403 20 Si 0.739 3.261 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.247 4.247 25 C -0.099 4.099 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.168 0.832 37 H 0.230 0.770 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.367 -6.767 -6.876 13.447 hybrid contribution 1.065 -0.520 -0.209 1.203 sum -8.302 -7.288 -7.085 13.123 Atomic orbital electron populations 1.21760 0.95035 1.01372 1.01885 1.21528 0.95431 0.97578 0.98591 1.21790 1.01879 0.95017 1.01019 1.21400 0.79796 1.00121 0.98365 1.47301 1.05789 1.19893 1.60060 1.22338 1.04877 0.85195 0.94277 1.21413 0.77027 0.84408 0.89217 1.43896 1.64472 1.14120 1.19817 1.90766 1.45181 1.82689 1.21748 1.18596 0.87272 0.80099 0.76505 1.90655 1.75411 1.36307 1.40875 1.18946 0.90597 0.94666 1.23326 1.20439 0.94220 0.95306 0.96098 1.21068 0.92265 0.98773 1.06783 1.17789 0.93195 0.90920 0.85720 1.19806 0.91685 1.06143 1.30046 0.89867 1.26065 1.01779 0.94091 0.92916 1.69722 1.38532 1.11536 1.20550 0.86141 0.80991 0.79482 0.79491 1.18229 1.19495 1.19742 1.20723 0.93307 0.97369 1.13262 1.20917 0.94965 0.95364 0.98673 0.92514 0.92663 0.92942 0.91507 0.93687 0.92308 0.92265 0.91542 0.89824 0.88843 0.83179 0.77013 0.76998 0.88370 0.85944 0.90339 0.88428 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 37.15 0.34 -1.13 16 2 C -0.11 -1.43 3.13 -90.62 -0.28 -1.71 16 3 C -0.14 -2.07 8.06 37.16 0.30 -1.77 16 4 C 0.13 1.92 4.82 -4.04 -0.02 1.90 16 5 N -0.60 -10.36 1.91 -176.25 -0.34 -10.70 16 6 C 0.06 0.84 5.37 -5.19 -0.03 0.81 16 7 C 0.50 7.15 6.21 -10.98 -0.07 7.09 16 8 N -0.86 -8.16 8.87 31.22 0.28 -7.88 16 9 O -0.53 -10.21 17.11 5.56 0.10 -10.11 16 10 C 0.58 12.55 5.81 -12.42 -0.07 12.48 16 11 O -0.55 -13.38 15.03 5.29 0.08 -13.30 16 12 C -0.27 -6.16 5.59 -104.73 -0.59 -6.75 16 13 C -0.04 -0.99 9.52 -39.61 -0.38 -1.37 16 14 C -0.17 -4.26 8.59 -39.27 -0.34 -4.59 16 15 C 0.13 3.16 5.54 -106.81 -0.59 2.57 16 16 C -0.45 -10.98 9.05 -37.75 -0.34 -11.32 16 17 H 0.08 1.92 7.87 -52.49 -0.41 1.50 16 18 C 0.07 1.68 5.25 -17.31 -0.09 1.59 16 19 N -0.78 -19.23 10.87 55.56 0.60 -18.63 16 20 Si 0.92 17.39 29.57 -169.99 -5.03 12.36 16 21 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 22 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.23 -5.09 9.73 -39.27 -0.38 -5.47 16 25 C -0.08 -1.70 7.39 -39.61 -0.29 -1.99 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.06 1.03 6.18 -51.93 -0.32 0.71 16 33 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.08 1.46 7.34 -51.93 -0.38 1.08 16 35 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.15 2.21 4.01 -52.09 -0.21 2.00 16 37 H 0.40 2.49 8.83 -40.82 -0.36 2.13 16 38 H 0.40 3.42 8.93 -40.82 -0.36 3.06 16 39 H 0.10 2.31 7.92 -52.49 -0.42 1.89 16 40 H 0.12 3.16 6.26 -52.49 -0.33 2.83 16 41 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 42 H 0.10 1.99 8.06 -52.48 -0.42 1.57 16 43 H 0.10 1.87 3.22 -52.49 -0.17 1.70 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -31.86 349.89 -7.76 -39.62 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.90 Total: 13.04 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.83 Total: -9.67 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.54 Total: -37.21 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.17 Total: -23.41 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.86 -7.76 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270242223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.876 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds