Wall clock time and date at job start Tue Mar 31 2020 09:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47104 * 2 1 4 4 C 1.53002 * 109.47741 * 119.99902 * 2 1 3 5 5 N 1.46497 * 109.47226 * 174.99708 * 4 2 1 6 6 C 1.46500 * 120.00389 * 269.99990 * 5 4 2 7 7 C 1.50700 * 109.47084 * 279.21253 * 6 5 4 8 8 N 1.34782 * 119.99788 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00172 * 359.97438 * 7 6 5 10 10 C 1.34779 * 119.99388 * 90.00385 * 5 4 2 11 11 O 1.21582 * 120.00356 * 6.43624 * 10 5 4 12 12 C 1.47641 * 119.99724 * 186.43249 * 10 5 4 13 13 C 1.40017 * 119.89820 * 149.30263 * 12 10 5 14 14 C 1.36316 * 120.11127 * 180.25782 * 13 12 10 15 15 C 1.40886 * 119.88793 * 359.51981 * 14 13 12 16 16 C 1.41110 * 120.10022 * 180.23496 * 15 14 13 17 17 H 1.07995 * 119.99753 * 209.58231 * 16 15 14 18 18 C 1.40228 * 120.00043 * 29.58111 * 16 15 14 19 19 N 1.30640 * 120.00101 * 10.60406 * 18 16 15 20 20 Si 1.86803 * 119.99778 * 190.60987 * 18 16 15 21 21 H 1.48499 * 109.47135 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47143 * 119.99806 * 20 18 16 23 23 H 1.48500 * 109.46863 * 239.99834 * 20 18 16 24 24 C 1.40882 * 119.79493 * 0.49787 * 15 14 13 25 25 C 1.36315 * 119.89264 * 359.73253 * 24 15 14 26 26 H 1.08999 * 109.47309 * 299.99669 * 1 2 3 27 27 H 1.08993 * 109.47566 * 60.00538 * 1 2 3 28 28 H 1.09002 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47359 * 240.00139 * 2 1 3 30 30 H 1.09002 * 109.46879 * 300.00500 * 3 2 1 31 31 H 1.08995 * 109.47120 * 59.99637 * 3 2 1 32 32 H 1.09000 * 109.47422 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46501 * 55.00187 * 4 2 1 34 34 H 1.08993 * 109.47036 * 295.00734 * 4 2 1 35 35 H 1.08996 * 109.46890 * 39.21722 * 6 5 4 36 36 H 1.09000 * 109.46836 * 159.21410 * 6 5 4 37 37 H 0.96999 * 120.00051 * 359.97438 * 8 7 6 38 38 H 0.96994 * 119.99909 * 180.02562 * 8 7 6 39 39 H 1.08001 * 119.94301 * 359.97438 * 13 12 10 40 40 H 1.08002 * 120.05321 * 179.72435 * 14 13 12 41 41 H 0.97004 * 120.00122 * 179.97438 * 19 18 16 42 42 H 1.08008 * 120.05554 * 179.71432 * 24 15 14 43 43 H 1.08000 * 119.94730 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1259 -1.9919 0.5610 7 6 4.1366 -3.1428 1.5338 8 7 4.6678 -4.3271 1.1707 9 8 3.6681 -3.0031 2.6437 10 6 4.2676 0.1493 1.7154 11 8 3.7538 1.0572 2.3399 12 6 5.7322 0.1155 1.5323 13 6 6.4552 1.3127 1.4668 14 6 7.8069 1.2867 1.2925 15 6 8.4777 0.0521 1.1884 16 6 9.8775 0.0198 1.0129 17 1 10.3357 -0.7981 0.4769 18 6 10.6734 1.0497 1.5346 19 7 10.1548 1.9247 2.3544 20 14 12.4754 1.1706 1.0571 21 1 12.8150 0.0672 0.1231 22 1 12.7253 2.4755 0.3941 23 1 13.3183 1.0646 2.2751 24 6 7.7459 -1.1499 1.2545 25 6 6.3938 -1.1137 1.4242 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6055 -1.7198 1.2951 34 1 1.7517 -0.1584 2.1369 35 1 3.5604 -2.2723 -0.3275 36 1 5.1493 -1.7460 0.2778 37 1 5.0428 -4.4387 0.2832 38 1 4.6744 -5.0680 1.7967 39 1 5.9405 2.2586 1.5499 40 1 8.3631 2.2108 1.2377 41 1 10.7055 2.6369 2.7156 42 1 8.2553 -2.0987 1.1706 43 1 5.8319 -2.0347 1.4746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270242223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:14 Heat of formation + Delta-G solvation = -62.856563 kcal Electronic energy + Delta-G solvation = -25435.022243 eV Core-core repulsion = 21865.488565 eV Total energy + Delta-G solvation = -3569.533677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78890 -40.00755 -39.10890 -37.27415 -35.90753 -35.07362 -34.61776 -31.97342 -31.58868 -29.10605 -28.36154 -27.96486 -26.46882 -23.43138 -22.97597 -22.19361 -21.26128 -20.29034 -19.47720 -18.54059 -18.05137 -17.74787 -17.30129 -17.05288 -16.44803 -16.13381 -15.63050 -15.53471 -15.20650 -15.04273 -14.62205 -14.52138 -14.21217 -14.03356 -13.71085 -13.58776 -13.25566 -13.09489 -13.02634 -12.84518 -12.75479 -12.39724 -12.35696 -12.17515 -11.83930 -11.66583 -11.59231 -11.30057 -11.28815 -11.18453 -10.64340 -10.60519 -9.68636 -9.51449 -9.34826 -8.71283 -6.48425 0.45928 1.05388 1.40054 1.42618 1.56572 1.56765 1.97287 2.04825 2.18156 2.64804 2.82223 3.61129 3.72381 3.95485 4.01035 4.07434 4.12357 4.23936 4.25566 4.37454 4.45566 4.59093 4.68016 4.80260 4.88914 4.95464 5.00461 5.02562 5.06964 5.15841 5.20672 5.25044 5.38814 5.45248 5.58082 5.63003 5.73861 5.91858 5.95072 6.00496 6.18503 6.36672 6.54369 6.57262 6.79152 6.88743 7.32701 7.38249 8.23562 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.004013 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.340397 B = 6975.879027 C = 7964.259695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.137 4.137 4 C 0.124 3.876 5 N -0.592 5.592 6 C 0.053 3.947 7 C 0.494 3.506 8 N -0.830 5.830 9 O -0.584 6.584 10 C 0.575 3.425 11 O -0.592 6.592 12 C -0.282 4.282 13 C -0.053 4.053 14 C -0.189 4.189 15 C 0.101 3.899 16 C -0.474 4.474 17 H 0.095 0.905 18 C 0.029 3.971 19 N -0.818 5.818 20 Si 0.991 3.009 21 H -0.248 1.248 22 H -0.266 1.266 23 H -0.269 1.269 24 C -0.231 4.231 25 C -0.069 4.069 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.422 0.578 38 H 0.409 0.591 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.292 0.708 42 H 0.122 0.878 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.950 -10.513 -10.121 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.194 4.194 4 C 0.002 3.998 5 N -0.322 5.322 6 C -0.073 4.073 7 C 0.278 3.722 8 N -0.396 5.396 9 O -0.463 6.463 10 C 0.370 3.630 11 O -0.475 6.475 12 C -0.286 4.286 13 C -0.073 4.073 14 C -0.208 4.208 15 C 0.098 3.902 16 C -0.502 4.502 17 H 0.113 0.887 18 C -0.187 4.187 19 N -0.443 5.443 20 Si 0.811 3.189 21 H -0.171 1.171 22 H -0.191 1.191 23 H -0.194 1.194 24 C -0.250 4.250 25 C -0.087 4.087 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.254 0.746 38 H 0.241 0.759 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.140 0.860 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.528 -9.582 -9.004 16.238 hybrid contribution 1.016 0.265 0.409 1.127 sum -8.511 -9.317 -8.595 15.268 Atomic orbital electron populations 1.21724 0.92752 1.02774 1.02260 1.21497 0.97204 0.95653 0.97909 1.21746 0.99706 0.96955 1.00997 1.21566 0.78471 1.01189 0.98544 1.47261 1.06552 1.19704 1.58636 1.22566 1.05211 0.83814 0.95685 1.21428 0.76901 0.85559 0.88302 1.43665 1.62255 1.12714 1.20938 1.90768 1.47959 1.83763 1.23811 1.18495 0.87123 0.80780 0.76637 1.90627 1.75874 1.38133 1.42833 1.19208 0.91684 0.94825 1.22913 1.20480 0.94155 0.95919 0.96714 1.20975 0.92522 0.98680 1.08635 1.18144 0.94114 0.91558 0.86396 1.20141 0.91868 1.07334 1.30843 0.88741 1.27008 1.06359 0.93176 0.92176 1.69803 1.40541 1.12328 1.21587 0.85012 0.74953 0.79707 0.79224 1.17102 1.19117 1.19383 1.20995 0.93822 0.97487 1.12744 1.21207 0.94678 0.95953 0.96861 0.93405 0.91104 0.91014 0.89334 0.91530 0.94465 0.95491 0.89330 0.92892 0.83668 0.83832 0.74635 0.75926 0.89277 0.87722 0.89731 0.86048 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.19 71.98 0.66 -1.79 16 2 C -0.10 -2.42 3.13 -10.79 -0.03 -2.46 16 3 C -0.14 -4.04 8.06 71.98 0.58 -3.46 16 4 C 0.12 3.65 4.82 86.38 0.42 4.07 16 5 N -0.59 -19.93 1.91 -829.80 -1.58 -21.51 16 6 C 0.05 1.32 5.37 85.63 0.46 1.78 16 7 C 0.49 12.84 6.21 87.66 0.54 13.38 16 8 N -0.83 -12.57 8.87 -173.53 -1.54 -14.11 16 9 O -0.58 -21.67 17.11 -3.02 -0.05 -21.73 16 10 C 0.58 25.46 5.81 86.73 0.50 25.97 16 11 O -0.59 -30.11 15.03 -3.97 -0.06 -30.17 16 12 C -0.28 -13.11 5.59 -19.93 -0.11 -13.22 16 13 C -0.05 -2.71 9.52 22.25 0.21 -2.49 16 14 C -0.19 -9.95 8.59 22.47 0.19 -9.75 16 15 C 0.10 5.12 5.54 -21.28 -0.12 5.00 16 16 C -0.47 -23.33 9.05 23.46 0.21 -23.12 16 17 H 0.09 4.28 7.87 -2.91 -0.02 4.26 16 18 C 0.03 1.39 5.25 85.35 0.45 1.84 16 19 N -0.82 -41.60 10.87 21.87 0.24 -41.36 16 20 Si 0.99 35.34 29.57 68.60 2.03 37.37 16 21 H -0.25 -8.33 7.11 99.48 0.71 -7.63 16 22 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 23 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 24 C -0.23 -10.21 9.73 22.47 0.22 -9.99 16 25 C -0.07 -2.84 7.39 22.25 0.16 -2.68 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.23 8.11 -2.39 -0.02 1.21 16 32 H 0.03 0.95 6.18 -2.39 -0.01 0.94 16 33 H 0.09 2.21 8.07 -2.38 -0.02 2.20 16 34 H 0.05 1.89 7.34 -2.39 -0.02 1.87 16 35 H 0.15 2.14 8.13 -2.39 -0.02 2.12 16 36 H 0.14 3.82 4.01 -2.54 -0.01 3.81 16 37 H 0.42 3.22 8.83 -92.71 -0.82 2.41 16 38 H 0.41 5.52 8.93 -92.71 -0.83 4.69 16 39 H 0.09 4.54 7.92 -2.91 -0.02 4.52 16 40 H 0.10 5.78 6.26 -2.91 -0.02 5.76 16 41 H 0.29 13.41 8.29 -92.71 -0.77 12.65 16 42 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 43 H 0.14 4.64 3.22 -2.91 -0.01 4.63 16 Total: -1.00 -74.02 349.89 2.79 -71.23 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.59 Total: 37.18 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.35 Total: -16.91 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -2.89 Total: -76.98 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.11 Total: -51.89 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Total: -74.02 2.79 -71.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270242223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.373 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds