Wall clock time and date at job start Tue Mar 31 2020 09:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46939 * 2 1 4 4 C 1.50698 * 109.46856 * 119.99832 * 2 1 3 5 5 O 1.21276 * 120.00377 * 0.02562 * 4 2 1 6 6 N 1.34783 * 119.99784 * 180.02562 * 4 2 1 7 7 C 1.39448 * 119.99620 * 185.26877 * 6 4 2 8 8 C 1.39125 * 119.92541 * 33.68815 * 7 6 4 9 9 C 1.37676 * 120.07090 * 180.25226 * 8 7 6 10 10 C 1.39748 * 119.92208 * 359.49137 * 9 8 7 11 11 C 1.47601 * 120.06969 * 180.27558 * 10 9 8 12 12 O 1.21582 * 120.00155 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99890 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00302 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47615 * 179.97438 * 14 13 11 16 16 C 1.50690 * 109.47487 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99813 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00061 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47195 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46756 * 119.99942 * 20 18 16 23 23 H 1.48494 * 109.47098 * 239.99584 * 20 18 16 24 24 C 1.39751 * 119.85654 * 0.25684 * 10 9 8 25 25 C 1.37667 * 119.92498 * 359.97438 * 24 10 9 26 26 H 1.08999 * 109.47555 * 300.00111 * 1 2 3 27 27 H 1.09005 * 109.47146 * 60.00459 * 1 2 3 28 28 H 1.09005 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47262 * 239.99435 * 2 1 3 30 30 H 1.08996 * 109.47015 * 299.99575 * 3 2 1 31 31 H 1.08997 * 109.47605 * 59.99645 * 3 2 1 32 32 H 1.09004 * 109.46813 * 179.97438 * 3 2 1 33 33 H 0.96998 * 119.99975 * 5.26823 * 6 4 2 34 34 H 1.07998 * 119.97218 * 0.02562 * 8 7 6 35 35 H 1.08001 * 120.03651 * 179.76370 * 9 8 7 36 36 H 0.97009 * 119.99696 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.46640 * 299.99715 * 14 13 11 38 38 H 1.08998 * 109.46995 * 59.99163 * 14 13 11 39 39 H 1.09004 * 109.46566 * 299.99963 * 15 14 13 40 40 H 1.09003 * 109.47361 * 59.98908 * 15 14 13 41 41 H 0.97009 * 120.00021 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.03689 * 180.02562 * 24 10 9 43 43 H 1.07995 * 119.96634 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.2442 -1.1717 2.0286 6 7 3.3574 -0.8331 1.4441 7 6 3.8231 -1.5839 2.5229 8 6 3.1209 -2.7106 2.9390 9 6 3.5751 -3.4511 4.0070 10 6 4.7487 -3.0760 4.6665 11 6 5.2419 -3.8711 5.8081 12 8 4.6268 -4.8532 6.1759 13 7 6.3737 -3.5078 6.4435 14 6 6.8636 -4.2971 7.5762 15 6 8.1546 -3.6746 8.1114 16 6 8.6582 -4.4862 9.2769 17 1 8.1118 -5.3587 9.6035 18 6 9.8165 -4.1150 9.9262 19 7 10.4821 -3.0530 9.5281 20 14 10.4404 -5.1208 11.3715 21 1 9.5179 -6.2581 11.6181 22 1 11.7963 -5.6419 11.0633 23 1 10.5032 -4.2624 12.5816 24 6 5.4545 -1.9468 4.2426 25 6 4.9921 -1.2080 3.1770 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9562 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4424 0.0005 33 1 3.9870 -0.3991 0.8473 34 1 2.2164 -3.0026 2.4260 35 1 3.0275 -4.3234 4.3320 36 1 6.8643 -2.7239 6.1502 37 1 6.1108 -4.3075 8.3644 38 1 7.0612 -5.3180 7.2491 39 1 8.9072 -3.6646 7.3229 40 1 7.9574 -2.6535 8.4382 41 1 11.2972 -2.7920 9.9848 42 1 6.3619 -1.6545 4.7499 43 1 5.5372 -0.3354 2.8486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272965293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:28 Heat of formation + Delta-G solvation = -66.013677 kcal Electronic energy + Delta-G solvation = -23336.991883 eV Core-core repulsion = 19767.321304 eV Total energy + Delta-G solvation = -3569.670580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06004 -39.68495 -38.10448 -35.15508 -34.97353 -34.87361 -32.88630 -31.16753 -30.48423 -29.09247 -27.63055 -25.38126 -24.46825 -22.96214 -22.68770 -21.00874 -20.43171 -20.06160 -18.28154 -17.55941 -17.35020 -16.40618 -15.96570 -15.56911 -15.00931 -14.89681 -14.83328 -14.52298 -14.37339 -14.07007 -13.69271 -13.49974 -13.31613 -13.21219 -12.87468 -12.63272 -12.48702 -12.42417 -12.27985 -11.72380 -11.62168 -11.40416 -11.17854 -11.05273 -10.63305 -10.61668 -10.33223 -10.16248 -9.83049 -9.47950 -9.20232 -9.12628 -8.59384 -8.42589 -8.24222 -6.09581 -4.12079 0.72127 1.26373 2.13201 2.59175 3.08913 3.28713 3.36203 3.41355 3.68283 3.92728 4.06096 4.30842 4.38512 4.42241 4.64952 4.75844 4.79744 5.00526 5.06977 5.13204 5.20529 5.27713 5.28488 5.32152 5.35665 5.41551 5.58892 5.77946 5.86177 5.93217 6.04690 6.23533 6.26681 6.35961 6.44251 6.74456 6.75546 6.91438 6.94203 7.51832 7.61466 7.68112 7.88941 8.01143 8.27995 8.64349 8.94105 9.52793 11.02080 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.039131 B = 0.002091 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.375167 B =13387.001087 C =13943.738536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.514 3.486 5 O -0.512 6.512 6 N -0.673 5.673 7 C 0.162 3.838 8 C -0.132 4.132 9 C -0.041 4.041 10 C -0.142 4.142 11 C 0.549 3.451 12 O -0.548 6.548 13 N -0.717 5.717 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.065 4.065 25 C -0.153 4.153 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.411 0.589 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.396 0.604 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.134 0.866 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 10.580 -23.795 29.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.205 4.205 4 C 0.302 3.698 5 O -0.386 6.386 6 N -0.318 5.318 7 C 0.068 3.932 8 C -0.152 4.152 9 C -0.061 4.061 10 C -0.146 4.146 11 C 0.335 3.665 12 O -0.427 6.427 13 N -0.367 5.367 14 C -0.001 4.001 15 C -0.026 4.026 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.085 4.085 25 C -0.174 4.174 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.231 0.769 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.631 9.655 -22.934 29.386 hybrid contribution 1.154 0.233 0.356 1.230 sum -14.478 9.888 -22.579 28.586 Atomic orbital electron populations 1.21644 0.92029 1.03145 1.02452 1.21338 0.98788 0.97371 0.95933 1.21830 1.01190 0.94026 1.03447 1.20978 0.81558 0.79505 0.87794 1.90754 1.54963 1.47033 1.45844 1.43527 1.08054 1.51466 1.28800 1.17887 0.94753 0.91170 0.89420 1.21052 1.01378 0.93741 0.98993 1.21170 0.93677 0.98502 0.92741 1.20139 0.97735 0.97851 0.98840 1.18202 0.81179 0.84539 0.82548 1.90747 1.57586 1.27587 1.66828 1.46270 1.25143 1.31218 1.34021 1.21760 0.97923 0.94636 0.85795 1.19337 0.90149 0.96692 0.96403 1.21093 1.08534 1.11893 1.14385 0.92144 1.25000 0.96601 0.95199 0.97544 1.69964 1.17151 1.25013 1.41196 0.86452 0.78723 0.80215 0.82157 1.19566 1.20950 1.20942 1.21179 0.98844 0.93267 0.95167 1.20777 0.97670 1.01459 0.97472 0.91714 0.91730 0.91746 0.88038 0.90978 0.91751 0.92084 0.75246 0.84498 0.84289 0.76903 0.92374 0.92375 0.95898 0.95902 0.92917 0.84808 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.48 37.16 0.32 -0.45 16 2 C -0.11 -0.56 3.27 -91.78 -0.30 -0.86 16 3 C -0.15 -0.50 9.09 37.15 0.34 -0.16 16 4 C 0.51 4.42 6.88 -10.98 -0.08 4.34 16 5 O -0.51 -6.55 13.67 5.56 0.08 -6.47 16 6 N -0.67 -4.99 5.24 -9.86 -0.05 -5.04 16 7 C 0.16 1.70 6.27 -83.73 -0.53 1.17 16 8 C -0.13 -1.63 8.62 -39.46 -0.34 -1.98 16 9 C -0.04 -0.58 9.58 -39.22 -0.38 -0.95 16 10 C -0.14 -2.09 5.88 -104.95 -0.62 -2.70 16 11 C 0.55 10.04 7.76 -12.44 -0.10 9.94 16 12 O -0.55 -11.93 16.34 5.29 0.09 -11.84 16 13 N -0.72 -12.99 5.51 -61.33 -0.34 -13.32 16 14 C 0.12 2.62 5.61 -4.05 -0.02 2.60 16 15 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 16 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 17 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 20 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 C -0.07 -0.77 9.53 -39.22 -0.37 -1.14 16 25 C -0.15 -1.50 9.94 -39.46 -0.39 -1.89 16 26 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.13 7.45 -51.93 -0.39 -0.26 16 33 H 0.41 1.60 8.09 -40.82 -0.33 1.27 16 34 H 0.14 1.71 6.42 -52.49 -0.34 1.37 16 35 H 0.14 1.98 7.64 -52.49 -0.40 1.58 16 36 H 0.40 6.13 6.49 -40.82 -0.27 5.86 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.13 1.35 6.39 -52.49 -0.34 1.02 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -34.77 363.41 -8.30 -43.07 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.24 Total: 2.26 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -3.02 Total: -5.20 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.35 Total: -43.72 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.16 Total: -18.32 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.77 -8.30 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272965293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.946 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds