Wall clock time and date at job start Tue Mar 31 2020 09:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46939 * 2 1 4 4 C 1.50698 * 109.46856 * 119.99832 * 2 1 3 5 5 O 1.21276 * 120.00377 * 0.02562 * 4 2 1 6 6 N 1.34783 * 119.99784 * 180.02562 * 4 2 1 7 7 C 1.39448 * 119.99620 * 185.26877 * 6 4 2 8 8 C 1.39125 * 119.92541 * 33.68815 * 7 6 4 9 9 C 1.37676 * 120.07090 * 180.25226 * 8 7 6 10 10 C 1.39748 * 119.92208 * 359.49137 * 9 8 7 11 11 C 1.47601 * 120.06969 * 180.27558 * 10 9 8 12 12 O 1.21582 * 120.00155 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99890 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00302 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47615 * 179.97438 * 14 13 11 16 16 C 1.50690 * 109.47487 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99813 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00061 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47195 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46756 * 119.99942 * 20 18 16 23 23 H 1.48494 * 109.47098 * 239.99584 * 20 18 16 24 24 C 1.39751 * 119.85654 * 0.25684 * 10 9 8 25 25 C 1.37667 * 119.92498 * 359.97438 * 24 10 9 26 26 H 1.08999 * 109.47555 * 300.00111 * 1 2 3 27 27 H 1.09005 * 109.47146 * 60.00459 * 1 2 3 28 28 H 1.09005 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47262 * 239.99435 * 2 1 3 30 30 H 1.08996 * 109.47015 * 299.99575 * 3 2 1 31 31 H 1.08997 * 109.47605 * 59.99645 * 3 2 1 32 32 H 1.09004 * 109.46813 * 179.97438 * 3 2 1 33 33 H 0.96998 * 119.99975 * 5.26823 * 6 4 2 34 34 H 1.07998 * 119.97218 * 0.02562 * 8 7 6 35 35 H 1.08001 * 120.03651 * 179.76370 * 9 8 7 36 36 H 0.97009 * 119.99696 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.46640 * 299.99715 * 14 13 11 38 38 H 1.08998 * 109.46995 * 59.99163 * 14 13 11 39 39 H 1.09004 * 109.46566 * 299.99963 * 15 14 13 40 40 H 1.09003 * 109.47361 * 59.98908 * 15 14 13 41 41 H 0.97009 * 120.00021 * 180.02562 * 19 18 16 42 42 H 1.07995 * 120.03689 * 180.02562 * 24 10 9 43 43 H 1.07995 * 119.96634 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.2442 -1.1717 2.0286 6 7 3.3574 -0.8331 1.4441 7 6 3.8231 -1.5839 2.5229 8 6 3.1209 -2.7106 2.9390 9 6 3.5751 -3.4511 4.0070 10 6 4.7487 -3.0760 4.6665 11 6 5.2419 -3.8711 5.8081 12 8 4.6268 -4.8532 6.1759 13 7 6.3737 -3.5078 6.4435 14 6 6.8636 -4.2971 7.5762 15 6 8.1546 -3.6746 8.1114 16 6 8.6582 -4.4862 9.2769 17 1 8.1118 -5.3587 9.6035 18 6 9.8165 -4.1150 9.9262 19 7 10.4821 -3.0530 9.5281 20 14 10.4404 -5.1208 11.3715 21 1 9.5179 -6.2581 11.6181 22 1 11.7963 -5.6419 11.0633 23 1 10.5032 -4.2624 12.5816 24 6 5.4545 -1.9468 4.2426 25 6 4.9921 -1.2080 3.1770 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9562 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4424 0.0005 33 1 3.9870 -0.3991 0.8473 34 1 2.2164 -3.0026 2.4260 35 1 3.0275 -4.3234 4.3320 36 1 6.8643 -2.7239 6.1502 37 1 6.1108 -4.3075 8.3644 38 1 7.0612 -5.3180 7.2491 39 1 8.9072 -3.6646 7.3229 40 1 7.9574 -2.6535 8.4382 41 1 11.2972 -2.7920 9.9848 42 1 6.3619 -1.6545 4.7499 43 1 5.5372 -0.3354 2.8486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272965293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:28 Heat of formation + Delta-G solvation = -89.451345 kcal Electronic energy + Delta-G solvation = -23338.008217 eV Core-core repulsion = 19767.321304 eV Total energy + Delta-G solvation = -3570.686913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86393 -40.93559 -39.19781 -36.66398 -35.96016 -35.48702 -34.85442 -32.31003 -31.79056 -30.51816 -27.99216 -26.96368 -25.59604 -23.97313 -23.65920 -22.78965 -21.56051 -20.90883 -19.24025 -18.63397 -18.38877 -18.17137 -16.98884 -16.59060 -16.49816 -16.46842 -15.85250 -15.75018 -15.40945 -14.95440 -14.81606 -14.74691 -14.38225 -14.28242 -13.97096 -13.72692 -13.50635 -13.21803 -13.13752 -12.96172 -12.88530 -12.54146 -12.33458 -12.25730 -12.07281 -12.00505 -11.69842 -11.48866 -11.46225 -11.05082 -10.81631 -10.61117 -10.10684 -10.06820 -9.24124 -8.24411 -6.34385 -0.30777 0.32921 1.38399 1.40944 1.42087 1.55148 1.85508 1.98561 2.19714 2.44416 2.82548 3.10381 3.52642 3.74425 3.78696 3.88425 3.97535 4.03540 4.25010 4.32565 4.41670 4.47586 4.47983 4.54304 4.77453 4.83528 4.89413 4.93391 4.95514 5.04152 5.07596 5.15445 5.22666 5.29213 5.32534 5.33969 5.39158 5.48139 5.57583 5.78010 5.85333 6.15901 6.33834 6.57203 6.78365 7.05534 7.19314 7.34704 8.87572 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.039131 B = 0.002091 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.375167 B =13387.001087 C =13943.738536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.145 4.145 4 C 0.510 3.490 5 O -0.560 6.560 6 N -0.658 5.658 7 C 0.172 3.828 8 C -0.142 4.142 9 C -0.052 4.052 10 C -0.166 4.166 11 C 0.549 3.451 12 O -0.592 6.592 13 N -0.710 5.710 14 C 0.139 3.861 15 C 0.023 3.977 16 C -0.547 4.547 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.059 4.059 25 C -0.140 4.140 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.432 0.568 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.411 0.589 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.266 0.734 42 H 0.152 0.848 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 12.460 -25.711 31.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 C -0.203 4.203 4 C 0.299 3.701 5 O -0.437 6.437 6 N -0.305 5.305 7 C 0.076 3.924 8 C -0.162 4.162 9 C -0.072 4.072 10 C -0.170 4.170 11 C 0.338 3.662 12 O -0.474 6.474 13 N -0.361 5.361 14 C 0.015 3.985 15 C -0.014 4.014 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.078 4.078 25 C -0.160 4.160 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.147 0.853 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.273 0.727 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.170 0.830 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.751 11.583 -24.904 31.177 hybrid contribution 0.821 -0.275 0.838 1.205 sum -13.931 11.308 -24.066 30.018 Atomic orbital electron populations 1.21668 0.92903 1.02197 1.02685 1.21403 0.98003 0.98368 0.94765 1.21858 1.02388 0.92438 1.03600 1.21773 0.81348 0.78690 0.88248 1.90748 1.56190 1.49054 1.47670 1.43489 1.08323 1.50575 1.28090 1.18031 0.94384 0.90278 0.89678 1.21022 1.01611 0.94740 0.98818 1.21084 0.93817 0.98651 0.93630 1.19855 0.99019 0.99425 0.98652 1.18747 0.80356 0.84145 0.82916 1.90714 1.58758 1.29655 1.68274 1.46033 1.25472 1.31399 1.33151 1.21287 0.96223 0.94338 0.86609 1.19142 0.91054 0.95821 0.95427 1.21486 1.09127 1.12339 1.15592 0.92430 1.25852 0.96725 0.96284 1.00253 1.70053 1.17614 1.26267 1.42465 0.85397 0.78226 0.78719 0.78705 1.19155 1.20129 1.20201 1.21402 0.98896 0.91992 0.95555 1.21142 0.97032 1.01874 0.95940 0.93607 0.89330 0.93331 0.85259 0.89240 0.93237 0.90198 0.72718 0.85092 0.85874 0.75208 0.93541 0.93369 0.96939 0.97085 0.92504 0.83042 0.80885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.48 71.98 0.61 -0.78 16 2 C -0.10 -0.76 3.27 -11.54 -0.04 -0.80 16 3 C -0.15 -0.48 9.09 71.98 0.65 0.17 16 4 C 0.51 7.88 6.88 87.66 0.60 8.48 16 5 O -0.56 -14.31 13.67 -3.02 -0.04 -14.35 16 6 N -0.66 -7.78 5.24 -303.49 -1.59 -9.37 16 7 C 0.17 3.23 6.27 38.36 0.24 3.47 16 8 C -0.14 -3.52 8.62 22.35 0.19 -3.32 16 9 C -0.05 -1.52 9.58 22.50 0.22 -1.30 16 10 C -0.17 -4.90 5.88 -20.08 -0.12 -5.01 16 11 C 0.55 20.66 7.76 86.71 0.67 21.33 16 12 O -0.59 -27.00 16.34 -3.97 -0.06 -27.07 16 13 N -0.71 -26.04 5.51 -466.21 -2.57 -28.61 16 14 C 0.14 6.19 5.61 86.38 0.48 6.67 16 15 C 0.02 1.17 5.09 29.84 0.15 1.32 16 16 C -0.55 -30.82 9.11 25.60 0.23 -30.59 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 18 C 0.01 0.43 5.46 84.66 0.46 0.90 16 19 N -0.92 -53.91 13.29 21.45 0.28 -53.62 16 20 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.06 -1.27 9.53 22.50 0.21 -1.06 16 25 C -0.14 -2.25 9.94 22.35 0.22 -2.03 16 26 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 27 H 0.09 0.45 8.14 -2.38 -0.02 0.44 16 28 H 0.05 0.64 8.10 -2.38 -0.02 0.62 16 29 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.08 -0.02 7.45 -2.39 -0.02 -0.04 16 33 H 0.43 1.44 8.09 -92.71 -0.75 0.69 16 34 H 0.13 3.39 6.42 -2.91 -0.02 3.37 16 35 H 0.12 3.84 7.64 -2.91 -0.02 3.82 16 36 H 0.41 12.50 6.49 -92.70 -0.60 11.90 16 37 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 42 H 0.15 2.66 6.39 -2.91 -0.02 2.65 16 43 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -77.85 363.41 2.53 -75.32 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -0.32 Total: 14.37 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 4.80 Total: -2.54 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -3.87 Total: -91.61 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.11 Total: -41.42 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -77.85 2.53 -75.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272965293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.131 kcal (2) G-P(sol) polarization free energy of solvation -77.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds