Wall clock time and date at job start Tue Mar 31 2020 09:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99649 * 2 1 4 4 C 1.50700 * 120.00573 * 179.97438 * 2 1 3 5 5 O 1.42905 * 109.46772 * 0.02562 * 4 2 1 6 6 C 1.35899 * 116.99866 * 180.02562 * 5 4 2 7 7 C 1.38803 * 120.01890 * 359.72232 * 6 5 4 8 8 C 1.38174 * 120.08249 * 179.70317 * 7 6 5 9 9 C 1.38166 * 120.11868 * 0.59673 * 8 7 6 10 10 C 1.38877 * 120.04386 * 359.68066 * 9 8 7 11 11 N 1.39943 * 120.04000 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99589 * 213.27374 * 11 10 9 13 13 O 1.21587 * 120.00233 * 5.32106 * 12 11 10 14 14 N 1.34781 * 119.99691 * 185.31824 * 12 11 10 15 15 C 1.46495 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47439 * 179.97438 * 15 14 12 17 17 C 1.50692 * 109.47615 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99881 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00104 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00354 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99882 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46754 * 59.99943 * 21 19 17 23 23 H 1.48495 * 109.46966 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47112 * 300.00028 * 21 19 17 25 25 C 1.38581 * 120.01805 * 180.02562 * 6 5 4 26 26 H 1.07994 * 120.00637 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99752 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47318 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46837 * 299.99659 * 3 2 1 30 30 H 1.08998 * 109.47346 * 59.99334 * 3 2 1 31 31 H 1.08998 * 109.47200 * 120.00104 * 4 2 1 32 32 H 1.08998 * 109.46959 * 240.00291 * 4 2 1 33 33 H 1.08003 * 119.96123 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.93661 * 180.28003 * 8 7 6 35 35 H 1.08009 * 119.97645 * 179.70213 * 9 8 7 36 36 H 0.96999 * 120.00193 * 33.27657 * 11 10 9 37 37 H 0.96994 * 119.99935 * 359.97438 * 14 12 11 38 38 H 1.08995 * 109.47236 * 300.00233 * 15 14 12 39 39 H 1.09007 * 109.46824 * 59.99695 * 15 14 12 40 40 H 1.09008 * 109.47167 * 300.00188 * 16 15 14 41 41 H 1.08998 * 109.47297 * 59.99722 * 16 15 14 42 42 H 0.96993 * 120.00472 * 180.02562 * 20 19 17 43 43 H 1.07991 * 120.06572 * 359.97199 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 8 1.1350 -2.3913 0.0005 6 6 1.6545 -3.6470 0.0015 7 6 3.0305 -3.8293 -0.0032 8 6 3.5602 -5.1055 0.0040 9 6 2.7221 -6.2039 0.0035 10 6 1.3446 -6.0275 0.0024 11 7 0.4958 -7.1402 0.0025 12 6 -0.6883 -7.0844 -0.6388 13 8 -0.9774 -6.1042 -1.2977 14 7 -1.5521 -8.1152 -0.5498 15 6 -2.8389 -8.0549 -1.2472 16 6 -3.6226 -9.3423 -0.9841 17 6 -4.9461 -9.2805 -1.7020 18 1 -5.2028 -8.4098 -2.2871 19 6 -5.8296 -10.3351 -1.6110 20 7 -5.5172 -11.3951 -0.8980 21 14 -7.4706 -10.2581 -2.5004 22 1 -7.2363 -10.1112 -3.9594 23 1 -8.2310 -11.5077 -2.2450 24 1 -8.2484 -9.0945 -2.0043 25 6 0.8107 -4.7464 0.0009 26 1 -0.5401 0.9352 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 3.1351 1.1061 0.0005 29 1 1.8001 1.8767 -0.8901 30 1 1.8000 1.8768 0.8899 31 1 2.6903 -1.3631 -0.8893 32 1 2.6902 -1.3623 0.8906 33 1 3.6881 -2.9725 -0.0082 34 1 4.6312 -5.2445 0.0049 35 1 3.1386 -7.2005 0.0043 36 1 0.7597 -7.9515 0.4640 37 1 -1.3213 -8.8973 -0.0245 38 1 -3.4098 -7.2008 -0.8831 39 1 -2.6670 -7.9471 -2.3182 40 1 -3.0515 -10.1963 -1.3485 41 1 -3.7945 -9.4506 0.0868 42 1 -6.1386 -12.1371 -0.8343 43 1 -0.2601 -4.6065 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273098303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:36 Heat of formation + Delta-G solvation = -30.099452 kcal Electronic energy + Delta-G solvation = -23354.508039 eV Core-core repulsion = 19786.394817 eV Total energy + Delta-G solvation = -3568.113222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68276 -39.71224 -37.81594 -35.55286 -34.95941 -34.25734 -32.86208 -30.61392 -29.97190 -28.73290 -27.55540 -27.06247 -24.84325 -23.07025 -22.23902 -21.02380 -20.62748 -18.83662 -18.68004 -18.02843 -16.45511 -16.20868 -16.14907 -16.13173 -15.97826 -15.29968 -14.66801 -14.54573 -14.20253 -13.97687 -13.81736 -13.67455 -13.55562 -13.22246 -12.95349 -12.72601 -12.28713 -12.07480 -11.89775 -11.53970 -11.42577 -11.22515 -11.15404 -11.03287 -10.66131 -10.41171 -10.19191 -9.95131 -9.58930 -9.31326 -9.29579 -8.63248 -8.43020 -8.35433 -8.01949 -6.09997 -4.12857 1.25054 1.38896 1.93001 2.71157 3.06442 3.31539 3.34004 3.35233 3.39016 3.82827 4.36035 4.41853 4.54717 4.73473 4.79562 4.86824 4.94853 5.00934 5.10314 5.13083 5.27105 5.27403 5.30162 5.47466 5.56365 5.72805 5.79748 6.13845 6.17001 6.23705 6.33770 6.34790 6.36593 6.39884 6.51939 6.72400 6.86794 6.89901 7.10680 7.36185 7.52962 7.60259 7.88439 8.17647 8.30513 8.79452 8.93076 9.51939 11.01555 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002383 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.321170 B =11747.910049 C =13155.168883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.152 4.152 3 C -0.111 4.111 4 C 0.098 3.902 5 O -0.309 6.309 6 C 0.150 3.850 7 C -0.234 4.234 8 C -0.061 4.061 9 C -0.190 4.190 10 C 0.217 3.783 11 N -0.691 5.691 12 C 0.695 3.305 13 O -0.575 6.575 14 N -0.731 5.731 15 C 0.138 3.862 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.156 4.156 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.408 0.592 37 H 0.395 0.605 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.924 17.254 5.333 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.168 4.168 4 C 0.023 3.977 5 O -0.223 6.223 6 C 0.104 3.896 7 C -0.254 4.254 8 C -0.080 4.080 9 C -0.211 4.211 10 C 0.120 3.880 11 N -0.339 5.339 12 C 0.396 3.604 13 O -0.452 6.452 14 N -0.384 5.384 15 C 0.016 3.984 16 C -0.024 4.024 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.177 4.177 26 H 0.117 0.883 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.243 0.757 37 H 0.229 0.771 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 20.247 17.979 4.758 27.492 hybrid contribution -0.446 -0.904 -0.007 1.008 sum 19.801 17.075 4.751 26.575 Atomic orbital electron populations 1.23807 0.95483 1.02718 0.98190 1.21518 0.95946 0.93811 1.03888 1.20718 0.99820 0.93764 1.02481 1.21512 0.91027 0.83625 1.01534 1.86044 1.35559 1.12066 1.88629 1.18680 0.91469 0.84044 0.95444 1.21131 0.93589 0.98535 1.12100 1.20623 0.99288 0.91289 0.96751 1.20762 0.91222 0.99621 1.09486 1.17130 0.88804 0.85991 0.96040 1.42766 1.18680 1.15648 1.56798 1.16089 0.79894 0.84330 0.80136 1.90938 1.76645 1.32751 1.44832 1.45586 1.19235 1.19064 1.54536 1.21679 0.79926 1.01428 0.95387 1.19328 0.94649 0.90648 0.97825 1.20998 1.01044 1.03124 1.30887 0.92229 1.24997 0.98652 0.95289 0.95356 1.69939 1.36621 1.06623 1.40127 0.86557 0.83348 0.77342 0.80205 1.20095 1.21261 1.20080 1.20367 1.01304 0.88783 1.07228 0.88252 0.86942 0.91944 0.91189 0.91221 0.91060 0.91086 0.85743 0.85560 0.85618 0.75677 0.77121 0.92465 0.92510 0.95909 0.95887 0.92781 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 13.71 29.02 0.40 -1.22 16 2 C -0.15 -1.33 6.05 -101.06 -0.61 -1.95 16 3 C -0.11 -0.66 10.05 36.01 0.36 -0.30 16 4 C 0.10 0.91 5.07 36.01 0.18 1.09 16 5 O -0.31 -4.02 8.53 -19.42 -0.17 -4.19 16 6 C 0.15 2.00 6.68 -39.25 -0.26 1.74 16 7 C -0.23 -2.49 9.04 -39.40 -0.36 -2.84 16 8 C -0.06 -0.59 10.03 -39.63 -0.40 -0.99 16 9 C -0.19 -2.06 9.96 -39.37 -0.39 -2.45 16 10 C 0.22 2.97 6.28 -83.71 -0.53 2.44 16 11 N -0.69 -9.22 5.35 -14.24 -0.08 -9.30 16 12 C 0.70 12.18 8.30 -86.91 -0.72 11.46 16 13 O -0.57 -12.30 14.03 5.29 0.07 -12.22 16 14 N -0.73 -12.67 5.56 -65.23 -0.36 -13.03 16 15 C 0.14 2.93 5.61 -4.05 -0.02 2.91 16 16 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 17 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.16 -2.39 8.59 -39.25 -0.34 -2.73 16 26 H 0.10 0.79 8.05 -52.49 -0.42 0.37 16 27 H 0.11 1.32 6.84 -52.49 -0.36 0.96 16 28 H 0.06 0.30 8.00 -51.93 -0.42 -0.12 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 33 H 0.12 1.00 6.29 -52.48 -0.33 0.67 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.41 3.94 8.83 -40.82 -0.36 3.58 16 37 H 0.40 5.75 8.49 -40.82 -0.35 5.40 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.15 2.61 6.41 -52.49 -0.34 2.27 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -33.09 365.89 -8.83 -41.92 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.29 Total: 6.06 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -3.24 Total: -5.85 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.30 Total: -47.60 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.09 Total: -16.41 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.09 -8.83 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273098303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.816 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds