Wall clock time and date at job start Tue Mar 31 2020 09:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99649 * 2 1 4 4 C 1.50700 * 120.00573 * 179.97438 * 2 1 3 5 5 O 1.42905 * 109.46772 * 0.02562 * 4 2 1 6 6 C 1.35899 * 116.99866 * 180.02562 * 5 4 2 7 7 C 1.38803 * 120.01890 * 359.72232 * 6 5 4 8 8 C 1.38174 * 120.08249 * 179.70317 * 7 6 5 9 9 C 1.38166 * 120.11868 * 0.59673 * 8 7 6 10 10 C 1.38877 * 120.04386 * 359.68066 * 9 8 7 11 11 N 1.39943 * 120.04000 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99589 * 213.27374 * 11 10 9 13 13 O 1.21587 * 120.00233 * 5.32106 * 12 11 10 14 14 N 1.34781 * 119.99691 * 185.31824 * 12 11 10 15 15 C 1.46495 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47439 * 179.97438 * 15 14 12 17 17 C 1.50692 * 109.47615 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99881 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00104 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00354 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99882 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46754 * 59.99943 * 21 19 17 23 23 H 1.48495 * 109.46966 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47112 * 300.00028 * 21 19 17 25 25 C 1.38581 * 120.01805 * 180.02562 * 6 5 4 26 26 H 1.07994 * 120.00637 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99752 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47318 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46837 * 299.99659 * 3 2 1 30 30 H 1.08998 * 109.47346 * 59.99334 * 3 2 1 31 31 H 1.08998 * 109.47200 * 120.00104 * 4 2 1 32 32 H 1.08998 * 109.46959 * 240.00291 * 4 2 1 33 33 H 1.08003 * 119.96123 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.93661 * 180.28003 * 8 7 6 35 35 H 1.08009 * 119.97645 * 179.70213 * 9 8 7 36 36 H 0.96999 * 120.00193 * 33.27657 * 11 10 9 37 37 H 0.96994 * 119.99935 * 359.97438 * 14 12 11 38 38 H 1.08995 * 109.47236 * 300.00233 * 15 14 12 39 39 H 1.09007 * 109.46824 * 59.99695 * 15 14 12 40 40 H 1.09008 * 109.47167 * 300.00188 * 16 15 14 41 41 H 1.08998 * 109.47297 * 59.99722 * 16 15 14 42 42 H 0.96993 * 120.00472 * 180.02562 * 20 19 17 43 43 H 1.07991 * 120.06572 * 359.97199 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 8 1.1350 -2.3913 0.0005 6 6 1.6545 -3.6470 0.0015 7 6 3.0305 -3.8293 -0.0032 8 6 3.5602 -5.1055 0.0040 9 6 2.7221 -6.2039 0.0035 10 6 1.3446 -6.0275 0.0024 11 7 0.4958 -7.1402 0.0025 12 6 -0.6883 -7.0844 -0.6388 13 8 -0.9774 -6.1042 -1.2977 14 7 -1.5521 -8.1152 -0.5498 15 6 -2.8389 -8.0549 -1.2472 16 6 -3.6226 -9.3423 -0.9841 17 6 -4.9461 -9.2805 -1.7020 18 1 -5.2028 -8.4098 -2.2871 19 6 -5.8296 -10.3351 -1.6110 20 7 -5.5172 -11.3951 -0.8980 21 14 -7.4706 -10.2581 -2.5004 22 1 -7.2363 -10.1112 -3.9594 23 1 -8.2310 -11.5077 -2.2450 24 1 -8.2484 -9.0945 -2.0043 25 6 0.8107 -4.7464 0.0009 26 1 -0.5401 0.9352 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 3.1351 1.1061 0.0005 29 1 1.8001 1.8767 -0.8901 30 1 1.8000 1.8768 0.8899 31 1 2.6903 -1.3631 -0.8893 32 1 2.6902 -1.3623 0.8906 33 1 3.6881 -2.9725 -0.0082 34 1 4.6312 -5.2445 0.0049 35 1 3.1386 -7.2005 0.0043 36 1 0.7597 -7.9515 0.4640 37 1 -1.3213 -8.8973 -0.0245 38 1 -3.4098 -7.2008 -0.8831 39 1 -2.6670 -7.9471 -2.3182 40 1 -3.0515 -10.1963 -1.3485 41 1 -3.7945 -9.4506 0.0868 42 1 -6.1386 -12.1371 -0.8343 43 1 -0.2601 -4.6065 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273098303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:35 Heat of formation + Delta-G solvation = -51.583612 kcal Electronic energy + Delta-G solvation = -23355.439663 eV Core-core repulsion = 19786.394817 eV Total energy + Delta-G solvation = -3569.044845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81402 -40.81283 -38.82786 -36.74167 -36.22411 -35.42282 -34.82277 -31.88866 -31.28272 -29.96274 -28.11962 -27.84729 -26.73371 -24.21951 -23.30886 -22.72416 -21.94540 -19.81229 -19.65188 -19.17509 -18.44727 -17.30542 -17.17414 -16.96263 -16.90182 -16.61146 -16.49664 -15.94934 -15.42657 -15.25945 -14.95712 -14.56436 -14.45215 -14.35585 -14.26346 -13.73381 -13.55608 -13.24104 -12.95399 -12.74483 -12.66404 -12.54782 -12.39542 -12.25277 -12.19480 -11.99440 -11.67370 -11.51937 -11.33131 -11.12301 -10.60709 -10.12349 -10.00877 -9.39461 -9.00179 -8.24602 -6.34813 0.29013 0.47767 1.21199 1.41109 1.43903 1.50085 1.55268 1.98902 2.17413 2.40777 2.84912 3.10137 3.23366 3.72159 3.94544 4.10878 4.15908 4.24208 4.29018 4.31384 4.40557 4.42028 4.48316 4.57898 4.66169 4.75084 4.84338 4.85511 5.01236 5.13162 5.22643 5.27994 5.33525 5.34925 5.47734 5.49863 5.57574 5.59997 5.76104 5.77388 5.94772 5.96579 6.15670 6.49608 6.77609 6.96249 7.34141 7.42762 8.86958 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002383 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.321170 B =11747.910049 C =13155.168883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C -0.108 4.108 4 C 0.087 3.913 5 O -0.336 6.336 6 C 0.134 3.866 7 C -0.225 4.225 8 C -0.051 4.051 9 C -0.181 4.181 10 C 0.193 3.807 11 N -0.672 5.672 12 C 0.696 3.304 13 O -0.617 6.617 14 N -0.724 5.724 15 C 0.159 3.841 16 C 0.024 3.976 17 C -0.548 4.548 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.965 3.035 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.269 1.269 25 C -0.191 4.191 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.427 0.573 37 H 0.411 0.589 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.012 0.988 41 H 0.010 0.990 42 H 0.266 0.734 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.772 17.863 5.392 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.144 4.144 3 C -0.165 4.165 4 C 0.013 3.987 5 O -0.250 6.250 6 C 0.088 3.912 7 C -0.245 4.245 8 C -0.070 4.070 9 C -0.202 4.202 10 C 0.098 3.902 11 N -0.321 5.321 12 C 0.396 3.604 13 O -0.497 6.497 14 N -0.379 5.379 15 C 0.035 3.965 16 C -0.013 4.013 17 C -0.586 4.586 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.194 1.194 25 C -0.213 4.213 26 H 0.132 0.868 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.174 0.826 34 H 0.187 0.813 35 H 0.174 0.826 36 H 0.266 0.734 37 H 0.247 0.753 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 23.149 18.573 4.856 30.073 hybrid contribution -1.203 -1.030 0.015 1.584 sum 21.945 17.543 4.871 28.514 Atomic orbital electron populations 1.23758 0.96297 1.02041 1.00900 1.21903 0.95768 0.95072 1.01623 1.20776 1.00454 0.92011 1.03249 1.21861 0.90976 0.82663 1.03207 1.86039 1.37481 1.12770 1.88744 1.18835 0.92618 0.83667 0.96045 1.21512 0.92356 1.00360 1.10230 1.21165 1.01240 0.90241 0.94308 1.21122 0.89593 1.01713 1.07775 1.17391 0.90087 0.85091 0.97670 1.42451 1.17148 1.16596 1.55935 1.16164 0.80802 0.83387 0.80016 1.90918 1.77773 1.34265 1.46774 1.45218 1.18131 1.19921 1.54586 1.21142 0.81187 0.99146 0.95018 1.19127 0.94083 0.91614 0.96504 1.21419 1.02543 1.03322 1.31344 0.92367 1.25861 1.02355 0.94864 0.96070 1.70040 1.37974 1.07232 1.41184 0.85505 0.78822 0.77635 0.79131 1.19363 1.20506 1.19439 1.20270 0.99767 0.90911 1.10306 0.86776 0.90013 0.90141 0.90494 0.90282 0.89463 0.88940 0.82646 0.81306 0.82613 0.73434 0.75340 0.93748 0.93572 0.97002 0.97154 0.92512 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 13.71 67.78 0.93 -3.07 16 2 C -0.14 -2.43 6.05 -16.48 -0.10 -2.53 16 3 C -0.11 -1.04 10.05 71.24 0.72 -0.33 16 4 C 0.09 1.50 5.07 71.24 0.36 1.86 16 5 O -0.34 -9.08 8.53 -92.42 -0.79 -9.87 16 6 C 0.13 3.61 6.68 22.49 0.15 3.76 16 7 C -0.23 -4.16 9.04 22.39 0.20 -3.95 16 8 C -0.05 -0.79 10.03 22.24 0.22 -0.56 16 9 C -0.18 -3.40 9.96 22.41 0.22 -3.18 16 10 C 0.19 5.24 6.28 38.13 0.24 5.48 16 11 N -0.67 -17.89 5.35 -317.22 -1.70 -19.59 16 12 C 0.70 25.22 8.30 179.05 1.49 26.71 16 13 O -0.62 -28.00 14.03 -3.99 -0.06 -28.06 16 14 N -0.72 -25.74 5.56 -478.54 -2.66 -28.40 16 15 C 0.16 7.02 5.61 86.38 0.48 7.50 16 16 C 0.02 1.23 5.09 29.84 0.15 1.38 16 17 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 19 C 0.01 0.42 5.46 84.66 0.46 0.88 16 20 N -0.92 -54.25 13.29 21.45 0.28 -53.97 16 21 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 C -0.19 -6.21 8.59 22.48 0.19 -6.01 16 26 H 0.11 1.90 8.05 -2.91 -0.02 1.88 16 27 H 0.08 2.18 6.84 -2.91 -0.02 2.16 16 28 H 0.08 0.50 8.00 -2.39 -0.02 0.48 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.22 7.65 -2.39 -0.02 1.20 16 32 H 0.09 1.19 7.67 -2.39 -0.02 1.17 16 33 H 0.16 1.83 6.29 -2.91 -0.02 1.82 16 34 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.43 7.73 8.83 -92.71 -0.82 6.91 16 37 H 0.41 11.99 8.49 -92.71 -0.79 11.20 16 38 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.10 4.17 6.41 -2.92 -0.02 4.16 16 Total: -1.00 -75.36 365.89 2.49 -72.88 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.58 Total: 23.70 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.96 Total: -2.69 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -4.07 Total: -101.95 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.84 Total: -37.93 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -75.36 2.49 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273098303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.292 kcal (2) G-P(sol) polarization free energy of solvation -75.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds