Wall clock time and date at job start Tue Mar 31 2020 07:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99885 * 2 1 4 4 C 1.53006 * 109.46979 * 125.00088 * 3 2 1 5 5 C 1.52995 * 109.46875 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46929 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99660 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00109 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.39939 * 119.99758 * 174.73723 * 10 8 7 12 12 C 1.38956 * 120.03570 * 326.32472 * 11 10 8 13 13 C 1.38156 * 120.07081 * 180.02562 * 12 11 10 14 14 C 1.38175 * 120.13567 * 359.72119 * 13 12 11 15 15 C 1.38905 * 120.06692 * 0.55652 * 14 13 12 16 16 O 1.35755 * 120.03289 * 179.72231 * 15 14 13 17 17 C 1.34825 * 117.00011 * 173.82163 * 16 15 14 18 18 H 1.07996 * 119.99945 * 354.59785 * 17 16 15 19 19 C 1.38654 * 119.99933 * 174.60004 * 17 16 15 20 20 N 1.31562 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99998 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47038 * 59.99674 * 21 19 17 23 23 H 1.48502 * 109.46895 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46859 * 299.99756 * 21 19 17 25 25 C 1.38708 * 120.03895 * 146.35779 * 11 10 8 26 26 H 1.07996 * 120.00187 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.00287 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47254 * 5.00730 * 3 2 1 30 30 H 1.08993 * 109.47335 * 245.00400 * 3 2 1 31 31 H 1.09001 * 109.46603 * 60.00243 * 4 3 2 32 32 H 1.09001 * 109.47070 * 300.00109 * 4 3 2 33 33 H 1.08993 * 109.47791 * 60.00352 * 5 4 3 34 34 H 1.09001 * 109.47141 * 299.99797 * 5 4 3 35 35 H 1.09001 * 109.46888 * 59.99768 * 6 5 4 36 36 H 1.09001 * 109.46731 * 299.99666 * 6 5 4 37 37 H 0.96996 * 120.00079 * 359.97438 * 7 6 5 38 38 H 0.96996 * 119.99805 * 354.72075 * 10 8 7 39 39 H 1.08002 * 119.96782 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.93391 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.96247 * 180.28112 * 14 13 12 42 42 H 0.97000 * 120.00104 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.06084 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7995 2.6583 1.1820 6 6 4.7716 2.6861 2.3633 7 7 5.5032 3.9553 2.3640 8 6 6.4205 4.2038 3.3197 9 8 6.6405 3.3747 4.1815 10 7 7.0932 5.3717 3.3207 11 6 7.9643 5.6765 4.3727 12 6 7.6784 5.2408 5.6609 13 6 8.5375 5.5418 6.7001 14 6 9.6862 6.2716 6.4612 15 6 9.9747 6.7149 5.1768 16 8 11.1006 7.4367 4.9439 17 6 11.3873 7.7261 3.6587 18 1 10.7827 7.3136 2.8645 19 6 12.4583 8.5532 3.3566 20 7 13.1945 9.0560 4.3241 21 14 12.8560 8.9535 1.5758 22 1 11.6923 9.6300 0.9488 23 1 14.0385 9.8503 1.5223 24 1 13.1539 7.6980 0.8409 25 6 9.1136 6.4144 4.1309 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6212 1.4027 -0.9313 31 1 3.7400 0.5065 1.0920 32 1 2.4772 1.2355 2.1131 33 1 3.0944 3.4846 1.2719 34 1 4.3573 2.7563 0.2507 35 1 5.4767 1.8598 2.2730 36 1 4.2141 2.5879 3.2949 37 1 5.3279 4.6165 1.6763 38 1 6.9737 6.0007 2.5921 39 1 6.7836 4.6663 5.8499 40 1 8.3134 5.2018 7.7003 41 1 10.3582 6.5014 7.2749 42 1 13.9436 9.6349 4.1128 43 1 9.3379 6.7542 3.1305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274606143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:38 Heat of formation + Delta-G solvation = -23.804815 kcal Electronic energy + Delta-G solvation = -23095.931829 eV Core-core repulsion = 19528.091562 eV Total energy + Delta-G solvation = -3567.840266 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33406 -38.76732 -37.24257 -36.44136 -35.04048 -34.17747 -32.58586 -32.18088 -29.47093 -28.74457 -27.85311 -25.28708 -24.10577 -21.99061 -21.75939 -21.72333 -20.31368 -20.16032 -18.51306 -17.82741 -17.32894 -16.42188 -16.00450 -15.61670 -15.09637 -15.04700 -14.76656 -14.51275 -14.14841 -13.97998 -13.93376 -13.56502 -13.44312 -12.94337 -12.83490 -12.45839 -12.25814 -11.90142 -11.69978 -11.59233 -11.51112 -11.23961 -11.10149 -11.03326 -10.98563 -10.72642 -10.44143 -10.04113 -9.75391 -9.60062 -9.46130 -9.15800 -8.77839 -7.67115 -7.10375 -6.42793 -4.02446 1.85666 2.09801 2.43519 2.71198 3.12245 3.13536 3.16572 3.34783 3.97241 4.17965 4.35467 4.50382 4.53896 4.64291 4.74024 4.97330 5.02322 5.12543 5.14384 5.31255 5.33850 5.37218 5.44233 5.53715 5.65536 5.74712 5.83785 5.89155 6.04333 6.12345 6.20836 6.27419 6.29634 6.34269 6.38443 6.59187 6.83163 7.04182 7.13790 7.31015 7.37152 7.46169 7.86403 8.01333 8.05436 8.66249 9.02518 9.73730 10.75261 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.002245 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.336898 B =12467.166166 C =13741.774169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C -0.095 4.095 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.138 3.862 7 N -0.749 5.749 8 C 0.702 3.298 9 O -0.571 6.571 10 N -0.683 5.683 11 C 0.199 3.801 12 C -0.205 4.205 13 C -0.063 4.063 14 C -0.202 4.202 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.089 0.911 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.271 1.271 25 C -0.258 4.258 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.395 0.605 38 H 0.402 0.598 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.270 0.730 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.208 -11.600 -9.263 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.171 4.171 3 C -0.132 4.132 4 C -0.150 4.150 5 C -0.170 4.170 6 C 0.014 3.986 7 N -0.405 5.405 8 C 0.402 3.598 9 O -0.447 6.447 10 N -0.329 5.329 11 C 0.105 3.895 12 C -0.226 4.226 13 C -0.082 4.082 14 C -0.222 4.222 15 C 0.115 3.885 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.106 0.894 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.280 4.280 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.229 0.771 38 H 0.237 0.763 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.664 -12.149 -8.311 25.371 hybrid contribution 0.006 0.784 -1.765 1.931 sum -20.658 -11.365 -10.076 25.641 Atomic orbital electron populations 1.23870 0.96025 1.01842 1.01660 1.22991 0.96058 0.98634 0.99461 1.20780 0.98197 0.95390 0.98858 1.21439 0.97876 0.97067 0.98646 1.21821 0.98150 0.98657 0.98335 1.21195 0.93748 0.85073 0.98580 1.45123 1.42669 1.21040 1.31676 1.15917 0.79335 0.82227 0.82306 1.90951 1.68558 1.46284 1.38877 1.42593 1.45372 1.19312 1.25657 1.17181 0.88952 0.97145 0.86232 1.20564 1.02870 1.08171 0.90974 1.20528 0.93349 0.96453 0.97861 1.20238 1.00349 1.06422 0.95202 1.19063 0.86393 0.90408 0.92657 1.84018 1.33855 1.61022 1.29160 1.21210 1.14564 1.30418 0.80589 0.89360 1.25265 0.95562 0.95772 0.99890 1.70028 1.17267 1.30509 1.31974 0.85807 0.78375 0.78736 0.80632 1.19614 1.20290 1.19583 1.20777 0.95766 1.10805 1.00640 0.88592 0.88630 0.87377 0.91452 0.90891 0.91325 0.91387 0.91201 0.91154 0.91555 0.91570 0.77111 0.76344 0.86261 0.86647 0.86413 0.92012 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 14.32 29.01 0.42 -0.69 16 2 C -0.15 -0.89 9.52 -36.03 -0.34 -1.23 16 3 C -0.10 -0.51 5.66 -27.88 -0.16 -0.66 16 4 C -0.11 -0.64 5.20 -26.73 -0.14 -0.78 16 5 C -0.13 -0.78 5.33 -26.73 -0.14 -0.92 16 6 C 0.14 1.27 5.67 -4.04 -0.02 1.25 16 7 N -0.75 -7.87 5.56 -65.22 -0.36 -8.23 16 8 C 0.70 10.85 8.30 -86.91 -0.72 10.13 16 9 O -0.57 -11.15 14.05 5.29 0.07 -11.07 16 10 N -0.68 -10.56 5.35 -14.24 -0.08 -10.64 16 11 C 0.20 3.90 6.27 -83.72 -0.52 3.38 16 12 C -0.20 -4.06 8.65 -39.35 -0.34 -4.40 16 13 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 14 C -0.20 -4.42 9.99 -39.36 -0.39 -4.82 16 15 C 0.17 4.15 6.64 -39.14 -0.26 3.89 16 16 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 17 C -0.39 -10.91 9.44 30.89 0.29 -10.62 16 18 H 0.09 2.26 5.30 -52.49 -0.28 1.99 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 21 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.26 -5.66 9.04 -39.21 -0.35 -6.02 16 26 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 27 H 0.10 0.49 7.84 -52.48 -0.41 0.08 16 28 H 0.11 0.57 8.06 -52.49 -0.42 0.15 16 29 H 0.07 0.35 7.79 -51.93 -0.40 -0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.40 2.93 8.49 -40.82 -0.35 2.58 16 38 H 0.40 4.82 8.83 -40.82 -0.36 4.46 16 39 H 0.12 2.34 6.43 -52.49 -0.34 2.00 16 40 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 42 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.13 2.76 5.72 -52.48 -0.30 2.46 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -33.91 366.75 -8.51 -42.42 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.22 Total: 8.38 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.19 Total: -12.13 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.32 Total: -43.39 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.07 Total: -16.15 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.91 -8.51 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274606143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.615 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds