Wall clock time and date at job start Tue Mar 31 2020 07:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99885 * 2 1 4 4 C 1.53006 * 109.46979 * 125.00088 * 3 2 1 5 5 C 1.52995 * 109.46875 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46929 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.46990 * 180.02562 * 6 5 4 8 8 C 1.34784 * 119.99660 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00109 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.39939 * 119.99758 * 174.73723 * 10 8 7 12 12 C 1.38956 * 120.03570 * 326.32472 * 11 10 8 13 13 C 1.38156 * 120.07081 * 180.02562 * 12 11 10 14 14 C 1.38175 * 120.13567 * 359.72119 * 13 12 11 15 15 C 1.38905 * 120.06692 * 0.55652 * 14 13 12 16 16 O 1.35755 * 120.03289 * 179.72231 * 15 14 13 17 17 C 1.34825 * 117.00011 * 173.82163 * 16 15 14 18 18 H 1.07996 * 119.99945 * 354.59785 * 17 16 15 19 19 C 1.38654 * 119.99933 * 174.60004 * 17 16 15 20 20 N 1.31562 * 119.99967 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99998 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47038 * 59.99674 * 21 19 17 23 23 H 1.48502 * 109.46895 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46859 * 299.99756 * 21 19 17 25 25 C 1.38708 * 120.03895 * 146.35779 * 11 10 8 26 26 H 1.07996 * 120.00187 * 179.97438 * 1 2 3 27 27 H 1.08006 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.00287 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47254 * 5.00730 * 3 2 1 30 30 H 1.08993 * 109.47335 * 245.00400 * 3 2 1 31 31 H 1.09001 * 109.46603 * 60.00243 * 4 3 2 32 32 H 1.09001 * 109.47070 * 300.00109 * 4 3 2 33 33 H 1.08993 * 109.47791 * 60.00352 * 5 4 3 34 34 H 1.09001 * 109.47141 * 299.99797 * 5 4 3 35 35 H 1.09001 * 109.46888 * 59.99768 * 6 5 4 36 36 H 1.09001 * 109.46731 * 299.99666 * 6 5 4 37 37 H 0.96996 * 120.00079 * 359.97438 * 7 6 5 38 38 H 0.96996 * 119.99805 * 354.72075 * 10 8 7 39 39 H 1.08002 * 119.96782 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.93391 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.96247 * 180.28112 * 14 13 12 42 42 H 0.97000 * 120.00104 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.06084 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7995 2.6583 1.1820 6 6 4.7716 2.6861 2.3633 7 7 5.5032 3.9553 2.3640 8 6 6.4205 4.2038 3.3197 9 8 6.6405 3.3747 4.1815 10 7 7.0932 5.3717 3.3207 11 6 7.9643 5.6765 4.3727 12 6 7.6784 5.2408 5.6609 13 6 8.5375 5.5418 6.7001 14 6 9.6862 6.2716 6.4612 15 6 9.9747 6.7149 5.1768 16 8 11.1006 7.4367 4.9439 17 6 11.3873 7.7261 3.6587 18 1 10.7827 7.3136 2.8645 19 6 12.4583 8.5532 3.3566 20 7 13.1945 9.0560 4.3241 21 14 12.8560 8.9535 1.5758 22 1 11.6923 9.6300 0.9488 23 1 14.0385 9.8503 1.5223 24 1 13.1539 7.6980 0.8409 25 6 9.1136 6.4144 4.1309 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6212 1.4027 -0.9313 31 1 3.7400 0.5065 1.0920 32 1 2.4772 1.2355 2.1131 33 1 3.0944 3.4846 1.2719 34 1 4.3573 2.7563 0.2507 35 1 5.4767 1.8598 2.2730 36 1 4.2141 2.5879 3.2949 37 1 5.3279 4.6165 1.6763 38 1 6.9737 6.0007 2.5921 39 1 6.7836 4.6663 5.8499 40 1 8.3134 5.2018 7.7003 41 1 10.3582 6.5014 7.2749 42 1 13.9436 9.6349 4.1128 43 1 9.3379 6.7542 3.1305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274606143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:36 Heat of formation + Delta-G solvation = -45.740631 kcal Electronic energy + Delta-G solvation = -23096.883037 eV Core-core repulsion = 19528.091562 eV Total energy + Delta-G solvation = -3568.791475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.68296 -40.45863 -38.41183 -37.54510 -35.88835 -35.64121 -34.22006 -33.23884 -30.99004 -30.24868 -28.77924 -27.26648 -24.90532 -23.48969 -23.27186 -22.34166 -21.64585 -20.60135 -20.03766 -19.39370 -18.96063 -17.42083 -17.13333 -16.77639 -16.46586 -16.30884 -15.96129 -15.76027 -15.66259 -15.42030 -15.25521 -14.62653 -14.56895 -14.17660 -14.09266 -13.55417 -13.40629 -13.23598 -12.91463 -12.74339 -12.68234 -12.39385 -12.36486 -12.13011 -12.07085 -11.70947 -11.54767 -11.47107 -11.28395 -11.13150 -10.70663 -10.17822 -10.15798 -9.31386 -8.82682 -8.44511 -6.13349 0.46359 0.72362 1.36730 1.42163 1.47411 1.53126 1.57935 2.05236 2.19491 2.86384 3.15816 3.20184 3.51508 3.81988 4.01541 4.04533 4.13616 4.27549 4.34974 4.46593 4.47753 4.52778 4.62097 4.67254 4.73786 4.79786 4.89056 4.94487 5.02702 5.08409 5.12364 5.13637 5.34656 5.36200 5.39803 5.47478 5.50356 5.69205 5.70586 5.80294 5.92924 5.97997 6.03366 6.22396 6.96112 6.99719 7.45630 7.79453 8.78190 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.002245 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.336898 B =12467.166166 C =13741.774169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.092 4.092 4 C -0.110 4.110 5 C -0.119 4.119 6 C 0.136 3.864 7 N -0.726 5.726 8 C 0.699 3.301 9 O -0.613 6.613 10 N -0.674 5.674 11 C 0.206 3.794 12 C -0.200 4.200 13 C -0.051 4.051 14 C -0.216 4.216 15 C 0.135 3.865 16 O -0.227 6.227 17 C -0.413 4.413 18 H 0.102 0.898 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.018 2.982 22 H -0.253 1.253 23 H -0.274 1.274 24 H -0.260 1.260 25 C -0.261 4.261 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.414 0.586 38 H 0.420 0.580 39 H 0.128 0.872 40 H 0.153 0.847 41 H 0.119 0.881 42 H 0.272 0.728 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.510 -12.326 -11.257 28.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.182 4.182 3 C -0.129 4.129 4 C -0.148 4.148 5 C -0.157 4.157 6 C 0.012 3.988 7 N -0.382 5.382 8 C 0.399 3.601 9 O -0.492 6.492 10 N -0.322 5.322 11 C 0.110 3.890 12 C -0.221 4.221 13 C -0.070 4.070 14 C -0.236 4.236 15 C 0.084 3.916 16 O -0.133 6.133 17 C -0.489 4.489 18 H 0.119 0.881 19 C -0.220 4.220 20 N -0.557 5.557 21 Si 0.837 3.163 22 H -0.178 1.178 23 H -0.198 1.198 24 H -0.184 1.184 25 C -0.283 4.283 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.251 0.749 38 H 0.258 0.742 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.057 -12.891 -10.357 28.374 hybrid contribution 0.462 0.813 -1.046 1.403 sum -22.595 -12.077 -11.403 28.043 Atomic orbital electron populations 1.24014 0.96154 1.02360 1.01405 1.23123 0.96296 0.99051 0.99715 1.20756 0.98119 0.95261 0.98793 1.21405 0.97841 0.96850 0.98699 1.21736 0.97577 0.99213 0.97135 1.21329 0.93791 0.83846 0.99789 1.44997 1.40782 1.21865 1.30573 1.16096 0.79750 0.81521 0.82717 1.90923 1.69941 1.47511 1.40835 1.42437 1.44522 1.19969 1.25273 1.17188 0.88602 0.95733 0.87454 1.20859 1.02935 1.07183 0.91146 1.20910 0.91739 0.94662 0.99674 1.20468 1.01511 1.07061 0.94510 1.19581 0.86476 0.91045 0.94504 1.83984 1.36219 1.63298 1.29796 1.21745 1.15281 1.30891 0.80996 0.88078 1.26589 0.94994 0.95227 1.05182 1.70183 1.18459 1.32221 1.34842 0.84656 0.78616 0.78880 0.74110 1.17751 1.19841 1.18431 1.20796 0.96197 1.11183 1.00084 0.88111 0.88226 0.87225 0.91057 0.90349 0.91557 0.91852 0.89977 0.90032 0.92736 0.92423 0.74890 0.74223 0.85367 0.82893 0.86253 0.91866 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 14.32 67.78 0.97 -1.01 16 2 C -0.16 -1.65 9.52 25.65 0.24 -1.40 16 3 C -0.09 -0.78 5.66 29.85 0.17 -0.61 16 4 C -0.11 -1.02 5.20 30.59 0.16 -0.86 16 5 C -0.12 -1.06 5.33 30.60 0.16 -0.90 16 6 C 0.14 2.20 5.67 86.38 0.49 2.69 16 7 N -0.73 -13.26 5.56 -478.51 -2.66 -15.92 16 8 C 0.70 20.09 8.30 179.05 1.49 21.58 16 9 O -0.61 -22.98 14.05 -4.00 -0.06 -23.04 16 10 N -0.67 -19.38 5.35 -317.22 -1.70 -21.08 16 11 C 0.21 7.80 6.27 38.13 0.24 8.04 16 12 C -0.20 -7.58 8.65 22.42 0.19 -7.38 16 13 C -0.05 -1.91 10.03 22.24 0.22 -1.68 16 14 C -0.22 -9.51 9.99 22.41 0.22 -9.28 16 15 C 0.14 6.82 6.64 22.56 0.15 6.97 16 16 O -0.23 -13.60 9.76 -22.74 -0.22 -13.82 16 17 C -0.41 -23.72 9.44 67.92 0.64 -23.08 16 18 H 0.10 5.27 5.30 -2.91 -0.02 5.25 16 19 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 20 N -0.92 -55.98 13.67 21.61 0.30 -55.69 16 21 Si 1.02 41.95 29.55 68.60 2.03 43.98 16 22 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 C -0.26 -11.44 9.04 22.51 0.20 -11.24 16 26 H 0.10 0.84 8.06 -2.91 -0.02 0.82 16 27 H 0.10 0.86 7.84 -2.91 -0.02 0.84 16 28 H 0.11 1.03 8.06 -2.91 -0.02 1.00 16 29 H 0.07 0.55 7.79 -2.39 -0.02 0.53 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.41 4.64 8.49 -92.71 -0.79 3.85 16 38 H 0.42 8.95 8.83 -92.71 -0.82 8.13 16 39 H 0.13 4.72 6.43 -2.91 -0.02 4.71 16 40 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.13 5.55 5.72 -2.91 -0.02 5.54 16 Total: -1.00 -76.46 366.75 3.13 -73.33 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.58 Total: 31.18 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 6.02 Total: -18.94 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.06 Total: -92.69 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.28 Total: -36.86 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -76.46 3.13 -73.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274606143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.588 kcal (2) G-P(sol) polarization free energy of solvation -76.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds