Wall clock time and date at job start Tue Mar 31 2020 09:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00096 * 2 1 4 4 C 1.52996 * 109.47306 * 240.00534 * 3 2 1 5 5 O 1.42900 * 109.46686 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.46735 * 120.00405 * 3 2 1 7 7 C 1.50703 * 109.46912 * 180.02562 * 6 3 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99832 * 359.97438 * 9 7 6 11 11 C 1.50703 * 109.47045 * 90.00120 * 10 9 7 12 12 H 1.07996 * 119.99684 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99744 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99822 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99722 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47137 * 90.00311 * 15 13 11 17 17 H 1.48499 * 109.47295 * 210.00094 * 15 13 11 18 18 H 1.48504 * 109.47324 * 330.00218 * 15 13 11 19 19 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 20 20 C 1.50699 * 109.47398 * 89.99557 * 19 9 7 21 21 C 1.38676 * 120.42037 * 269.72319 * 20 19 9 22 22 C 1.38625 * 118.42195 * 179.78065 * 21 20 19 23 23 C 1.38230 * 119.15977 * 0.51270 * 22 21 20 24 24 N 1.31855 * 120.76206 * 359.72491 * 23 22 21 25 25 C 1.31883 * 121.72951 * 0.02562 * 24 23 22 26 26 H 1.08004 * 119.99910 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.99932 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.99905 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47554 * 299.99873 * 4 3 2 30 30 H 1.09004 * 109.47108 * 60.00124 * 4 3 2 31 31 H 1.09000 * 109.46870 * 180.02562 * 4 3 2 32 32 H 0.96698 * 114.00516 * 60.00193 * 5 3 2 33 33 H 1.09002 * 109.47398 * 300.00410 * 6 3 2 34 34 H 1.09001 * 109.47194 * 60.00591 * 6 3 2 35 35 H 1.08997 * 109.47024 * 210.00620 * 10 9 7 36 36 H 1.09000 * 109.46875 * 330.00379 * 10 9 7 37 37 H 0.97008 * 119.99205 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47082 * 209.99555 * 19 9 7 39 39 H 1.09004 * 109.46754 * 329.99821 * 19 9 7 40 40 H 1.08009 * 120.78680 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.41843 * 180.22350 * 22 21 20 42 42 H 1.07994 * 119.61907 * 179.74576 * 23 22 21 43 43 H 1.07998 * 119.62060 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3863 -1.2493 5 8 1.1349 2.3912 0.0006 6 6 2.9432 1.3860 1.2492 7 6 3.6963 2.6914 1.2496 8 8 3.5447 3.4792 0.3400 9 7 4.5390 2.9830 2.2602 10 6 4.7225 2.0311 3.3586 11 6 5.8509 1.0897 3.0243 12 1 6.3781 1.1901 2.0872 13 6 6.2099 0.1003 3.9149 14 7 5.5674 -0.0222 5.0558 15 14 7.6089 -1.0662 3.5008 16 1 8.8889 -0.4999 3.9972 17 1 7.3654 -2.3806 4.1475 18 1 7.6848 -1.2453 2.0286 19 6 5.2707 4.2522 2.2608 20 6 4.4559 5.3014 2.9724 21 6 3.5620 6.0936 2.2679 22 6 2.8304 7.0427 2.9647 23 6 3.0227 7.1744 4.3272 24 7 3.8854 6.4068 4.9638 25 6 4.5947 5.4903 4.3342 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 3.6514 0.5579 -1.2494 30 1 2.3163 1.3286 -2.1392 31 1 3.4884 2.3301 -1.2490 32 1 0.5438 2.4030 0.7659 33 1 2.3166 1.3282 2.1393 34 1 3.6516 0.5576 1.2491 35 1 4.9609 2.5736 4.2735 36 1 3.8046 1.4613 3.5028 37 1 5.8203 -0.7182 5.6825 38 1 6.2234 4.1220 2.7741 39 1 5.4516 4.5677 1.2333 40 1 3.4358 5.9712 1.2022 41 1 2.1225 7.6745 2.4488 42 1 2.4598 7.9142 4.8767 43 1 5.2920 4.8805 4.8894 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279118961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:19 Heat of formation + Delta-G solvation = -30.579031 kcal Electronic energy + Delta-G solvation = -25529.005995 eV Core-core repulsion = 21960.871977 eV Total energy + Delta-G solvation = -3568.134018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11285 -39.41254 -37.60322 -35.16309 -33.14755 -32.73732 -32.13414 -31.42867 -30.75881 -28.00047 -27.45881 -25.52803 -23.41441 -22.90406 -22.56069 -21.55371 -19.42447 -18.46475 -16.95977 -16.87367 -16.51093 -16.26744 -15.91561 -15.33815 -15.17896 -14.99005 -14.46066 -14.32705 -13.93942 -13.53791 -13.23041 -12.81410 -12.71250 -12.55849 -12.38533 -12.02834 -11.87950 -11.82319 -11.65730 -11.26837 -11.16182 -11.08862 -11.03517 -10.87146 -10.69248 -10.25090 -9.90766 -9.81275 -9.55894 -9.28760 -9.21837 -9.01223 -8.70066 -8.56413 -7.78532 -6.24515 -4.32879 1.32191 1.55013 2.32589 3.18086 3.26066 3.27712 3.39476 3.79275 4.20700 4.28452 4.54928 4.68654 4.92043 5.05282 5.08220 5.18027 5.19452 5.26243 5.29880 5.33651 5.45113 5.52121 5.72384 5.90181 5.92076 6.04733 6.08039 6.09596 6.17608 6.29396 6.34394 6.38406 6.56649 6.60840 6.66333 6.74409 6.87797 6.95841 7.11230 7.45918 7.69915 7.93673 7.98403 8.20428 8.27198 8.73169 9.00177 9.35851 10.81881 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.008133 B = 0.006891 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.022049 B = 4062.348256 C = 6660.938295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.176 3.824 4 C -0.143 4.143 5 O -0.541 6.541 6 C -0.157 4.157 7 C 0.522 3.478 8 O -0.552 6.552 9 N -0.594 5.594 10 C 0.238 3.762 11 C -0.540 4.540 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.161 3.839 20 C -0.144 4.144 21 C -0.054 4.054 22 C -0.181 4.181 23 C 0.088 3.912 24 N -0.490 5.490 25 C 0.113 3.887 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.365 0.635 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.490 5.617 -5.590 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.194 4.194 3 C 0.135 3.865 4 C -0.200 4.200 5 O -0.345 6.345 6 C -0.197 4.197 7 C 0.311 3.689 8 O -0.432 6.432 9 N -0.324 5.324 10 C 0.119 3.881 11 C -0.579 4.579 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.527 5.527 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C 0.037 3.963 20 C -0.148 4.148 21 C -0.081 4.081 22 C -0.201 4.201 23 C -0.069 4.069 24 N -0.199 5.199 25 C -0.044 4.044 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.211 0.789 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.166 0.834 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.138 6.136 -5.532 10.293 hybrid contribution 0.331 -1.266 -0.195 1.323 sum -5.808 4.871 -5.728 9.501 Atomic orbital electron populations 1.23767 0.96033 1.01965 1.01182 1.23701 0.96701 0.99251 0.99744 1.19915 0.87889 0.83466 0.95278 1.21899 0.98724 1.04539 0.94842 1.86664 1.50207 1.49334 1.48344 1.22301 1.00262 0.98319 0.98823 1.20256 0.79368 0.87817 0.81474 1.90543 1.65866 1.50734 1.36077 1.48264 1.42052 1.17748 1.24351 1.19432 0.97469 0.86996 0.84242 1.21481 1.17361 1.14609 1.04450 0.92003 1.24944 0.96654 0.97370 0.94757 1.69926 1.40593 1.33553 1.08599 0.86532 0.82297 0.80181 0.78698 1.20456 1.21075 1.19758 1.20100 0.93658 0.82030 1.00482 1.21452 0.99422 0.98206 0.95674 1.21674 0.92742 0.92594 1.01072 1.22103 1.01580 1.00468 0.95976 1.22684 0.95129 0.97114 0.91964 1.67696 1.06375 1.05454 1.40349 1.22799 0.96351 0.93801 0.91435 0.87967 0.88566 0.86663 0.91945 0.92930 0.88640 0.78888 0.89355 0.87027 0.94701 0.94563 0.92451 0.89261 0.89866 0.84376 0.85313 0.83360 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 13.93 29.02 0.40 -1.87 16 2 C -0.18 -2.34 8.77 -36.02 -0.32 -2.66 16 3 C 0.18 2.71 0.94 -91.77 -0.09 2.62 16 4 C -0.14 -2.25 8.51 37.16 0.32 -1.93 16 5 O -0.54 -8.53 10.84 -53.50 -0.58 -9.11 16 6 C -0.16 -2.71 3.48 -27.88 -0.10 -2.80 16 7 C 0.52 10.02 7.23 -10.98 -0.08 9.94 16 8 O -0.55 -11.10 12.20 -12.71 -0.15 -11.26 16 9 N -0.59 -11.62 2.44 -176.43 -0.43 -12.05 16 10 C 0.24 5.34 4.97 -5.19 -0.03 5.31 16 11 C -0.54 -13.26 9.28 -34.44 -0.32 -13.58 16 12 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 13 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -23.67 13.29 55.43 0.74 -22.93 16 15 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 17 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.16 2.81 5.56 -5.20 -0.03 2.78 16 20 C -0.14 -2.37 5.48 -104.48 -0.57 -2.94 16 21 C -0.05 -0.83 9.86 -39.28 -0.39 -1.22 16 22 C -0.18 -2.42 10.11 -39.44 -0.40 -2.82 16 23 C 0.09 1.22 11.18 -17.54 -0.20 1.03 16 24 N -0.49 -8.08 10.36 -13.25 -0.14 -8.21 16 25 C 0.11 1.89 10.86 -17.55 -0.19 1.70 16 26 H 0.10 1.16 6.41 -52.48 -0.34 0.82 16 27 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.72 5.51 -51.93 -0.29 1.43 16 32 H 0.36 4.67 8.05 45.56 0.37 5.04 16 33 H 0.09 1.49 7.40 -51.93 -0.38 1.11 16 34 H 0.11 2.04 8.00 -51.93 -0.42 1.62 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 0.85 6.44 -51.93 -0.33 0.52 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.09 1.51 8.02 -51.93 -0.42 1.10 16 39 H 0.08 1.43 7.37 -51.93 -0.38 1.04 16 40 H 0.14 2.15 7.72 -52.48 -0.41 1.75 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 43 H 0.16 2.55 8.06 -52.49 -0.42 2.12 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -28.69 361.30 -7.74 -36.43 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.52 Total: 11.77 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.08 Total: -4.87 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.17 Total: -43.20 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.74 Total: -20.36 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.69 -7.74 -36.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279118961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.850 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds