Wall clock time and date at job start Tue Mar 31 2020 07:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46954 * 82.58155 * 3 2 1 5 5 C 1.37097 * 120.00120 * 263.92652 * 4 3 2 6 6 H 1.08000 * 119.99766 * 199.75780 * 5 4 3 7 7 C 1.38947 * 119.99819 * 19.75747 * 5 4 3 8 8 N 1.31411 * 120.00455 * 21.74447 * 7 5 4 9 9 Si 1.86805 * 119.99809 * 201.74641 * 7 5 4 10 10 H 1.48503 * 109.47056 * 89.99815 * 9 7 5 11 11 H 1.48494 * 109.47268 * 209.99776 * 9 7 5 12 12 H 1.48498 * 109.46917 * 329.99806 * 9 7 5 13 13 C 1.34771 * 119.99443 * 83.92925 * 4 3 2 14 14 O 1.21296 * 119.99527 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00715 * 359.97438 * 13 4 3 16 16 C 1.52996 * 109.47278 * 180.02562 * 15 13 4 17 17 C 1.50706 * 109.47034 * 179.97438 * 16 15 13 18 18 N 1.30260 * 125.61663 * 90.02273 * 17 16 15 19 19 C 1.34472 * 108.70087 * 179.97438 * 18 17 16 20 20 C 1.34329 * 107.66911 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.44556 * 180.02562 * 20 19 18 22 22 C 1.52994 * 109.47080 * 60.00030 * 21 20 19 23 23 C 1.53007 * 109.47228 * 180.02562 * 21 20 19 24 24 C 1.53002 * 109.47033 * 300.00080 * 21 20 19 25 25 O 1.33962 * 125.62104 * 269.71768 * 17 16 15 26 26 H 4.40643 * 5.51542 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.46691 * 322.58548 * 3 2 1 28 28 H 1.08998 * 109.47010 * 202.58371 * 3 2 1 29 29 H 0.96993 * 120.00226 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46907 * 59.99541 * 15 13 4 31 31 H 1.08999 * 109.46863 * 299.99977 * 15 13 4 32 32 H 1.09003 * 109.47359 * 60.00350 * 16 15 13 33 33 H 1.08999 * 109.47065 * 299.99743 * 16 15 13 34 34 H 1.08001 * 126.16670 * 180.02562 * 19 18 17 35 35 H 1.09006 * 109.47065 * 60.00402 * 22 21 20 36 36 H 1.09002 * 109.47379 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.47331 * 300.00341 * 22 21 20 38 38 H 1.08998 * 109.47008 * 59.99839 * 23 21 20 39 39 H 1.09002 * 109.46990 * 180.02562 * 23 21 20 40 40 H 1.08999 * 109.46747 * 299.99640 * 23 21 20 41 41 H 1.09002 * 109.46824 * 59.99998 * 24 21 20 42 42 H 1.09002 * 109.46972 * 179.97438 * 24 21 20 43 43 H 1.08998 * 109.47365 * 300.00261 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1775 -1.3697 5 6 3.4819 -1.4261 -1.8167 6 1 4.1252 -1.5317 -2.6777 7 6 3.0064 -2.5556 -1.1618 8 7 1.9254 -2.4781 -0.4187 9 14 3.9039 -4.1844 -1.3379 10 1 4.9300 -4.3021 -0.2708 11 1 2.9324 -5.3007 -1.2156 12 1 4.5630 -4.2452 -2.6672 13 6 3.2421 0.8862 -2.1903 14 8 3.6469 0.7388 -3.3242 15 6 2.8597 2.2587 -1.6992 16 6 3.0742 3.2791 -2.8189 17 6 2.6911 4.6515 -2.3279 18 7 3.4909 5.5001 -1.7474 19 6 2.7973 6.6136 -1.4520 20 6 1.5337 6.4294 -1.8689 21 6 0.3987 7.4134 -1.7479 22 6 0.7545 8.6973 -2.5000 23 6 -0.8701 6.8048 -2.3486 24 6 0.1592 7.7367 -0.2718 25 8 1.4735 5.2020 -2.4218 26 1 -1.0500 0.0002 -0.0002 27 1 3.0097 -0.8154 0.6244 28 1 3.0089 0.9497 0.3947 29 1 1.5938 -3.2664 0.0387 30 1 3.4789 2.5235 -0.8421 31 1 1.8106 2.2595 -1.4035 32 1 2.4546 3.0141 -3.6756 33 1 4.1232 3.2784 -3.1150 34 1 3.1860 7.4967 -0.9669 35 1 0.9250 8.4669 -3.5517 36 1 -0.0663 9.4092 -2.4122 37 1 1.6583 9.1307 -2.0718 38 1 -1.1234 5.8902 -1.8124 39 1 -1.6910 7.5166 -2.2615 40 1 -0.6998 6.5741 -3.4002 41 1 1.0630 8.1701 0.1565 42 1 -0.6615 8.4487 -0.1843 43 1 -0.0942 6.8220 0.2641 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281978710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:50 Heat of formation + Delta-G solvation = 36.500802 kcal Electronic energy + Delta-G solvation = -24580.962638 eV Core-core repulsion = 21015.737419 eV Total energy + Delta-G solvation = -3565.225219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.27836 -38.74261 -37.28307 -35.31983 -34.65310 -33.21172 -32.02721 -31.22114 -28.84447 -27.62628 -27.60010 -26.51375 -25.53028 -23.71744 -22.69817 -21.10238 -19.73397 -18.94160 -17.87328 -17.09209 -16.63367 -16.47371 -16.04743 -15.36421 -14.86613 -14.56369 -14.33151 -14.28935 -14.11043 -13.50517 -13.42833 -13.16485 -12.71092 -12.56985 -12.45792 -12.25654 -12.12607 -12.00060 -11.76412 -11.64662 -11.57657 -11.34706 -11.21929 -11.12248 -11.00739 -10.77738 -10.47808 -10.33002 -10.31785 -9.37531 -9.25977 -8.92547 -8.65507 -8.38772 -7.86839 -6.33601 -3.87879 1.52982 2.68863 2.78869 3.15159 3.25984 3.30475 3.65904 3.90185 4.03812 4.08166 4.21004 4.38694 4.58435 4.59775 4.89843 4.95544 5.04225 5.10952 5.26286 5.28023 5.38253 5.43633 5.44542 5.48849 5.53940 5.55688 5.59460 5.71428 5.74383 5.90871 5.94794 5.95938 6.02443 6.13520 6.22327 6.33232 6.35938 6.46986 6.70106 7.00788 7.56201 7.88097 8.04197 8.40609 8.80248 9.11725 9.33981 9.88260 10.67044 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.003122 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.800077 B = 8965.062761 C = 9553.153126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.438 5.438 5 C -0.317 4.317 6 H 0.105 0.895 7 C 0.033 3.967 8 N -0.860 5.860 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.454 3.546 14 O -0.583 6.583 15 C -0.128 4.128 16 C -0.005 4.005 17 C 0.204 3.796 18 N -0.485 5.485 19 C -0.039 4.039 20 C -0.046 4.046 21 C 0.020 3.980 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.140 4.140 25 O -0.194 6.194 26 H 0.199 0.801 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.268 0.732 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.177 0.823 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 18.649 2.386 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.116 4.116 3 C 0.108 3.892 4 N -0.156 5.156 5 C -0.445 4.445 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.497 5.497 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.243 3.757 14 O -0.468 6.468 15 C -0.169 4.169 16 C -0.043 4.043 17 C -0.002 4.002 18 N -0.214 5.214 19 C -0.178 4.178 20 C -0.099 4.099 21 C 0.019 3.981 22 C -0.196 4.196 23 C -0.202 4.202 24 C -0.197 4.197 25 O -0.081 6.081 26 H 0.216 0.784 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.194 0.806 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.093 18.270 2.035 18.833 hybrid contribution -0.737 -0.804 0.080 1.094 sum -4.831 17.466 2.116 18.244 Atomic orbital electron populations 1.24255 0.95359 1.06329 1.01815 1.23143 0.94338 0.95467 0.98632 1.18232 0.84330 1.00503 0.86123 1.43665 1.55803 1.06923 1.09206 1.19664 1.28393 0.80625 1.15781 0.87769 1.25308 0.94955 0.99542 0.97413 1.70088 1.17845 1.30613 1.31168 0.86014 0.79151 0.81067 0.79035 1.20324 1.21152 1.19366 1.19849 0.84417 0.85675 0.85781 1.90532 1.51280 1.85884 1.19078 1.21548 1.03212 0.93697 0.98478 1.19863 1.04398 0.81513 0.98539 1.26581 0.77713 0.97880 0.98059 1.70485 1.33516 1.01665 1.15703 1.22927 0.90522 0.98683 1.05667 1.23292 0.98294 0.85736 1.02611 1.19078 0.90558 0.91186 0.97265 1.21925 1.02085 0.95243 1.00382 1.21875 0.95733 1.01166 1.01468 1.21931 1.02296 1.02209 0.93275 1.84418 1.35554 1.26412 1.61750 0.78425 0.87548 0.91851 0.92143 0.89664 0.89784 0.88413 0.86973 0.80583 0.92139 0.91338 0.91961 0.91855 0.91743 0.92037 0.91957 0.91336 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.35 19.25 29.55 0.57 -4.78 16 2 C -0.11 -2.54 10.75 -37.12 -0.40 -2.94 16 3 C 0.23 5.07 4.91 -6.82 -0.03 5.04 16 4 N -0.44 -10.91 2.60 -117.93 -0.31 -11.22 16 5 C -0.32 -8.63 9.28 -14.93 -0.14 -8.77 16 6 H 0.10 2.98 7.42 -52.49 -0.39 2.59 16 7 C 0.03 0.84 4.83 -17.47 -0.08 0.76 16 8 N -0.86 -22.45 9.59 55.50 0.53 -21.92 16 9 Si 0.92 20.34 29.61 -169.99 -5.03 15.30 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 C 0.45 10.76 7.56 -10.99 -0.08 10.68 16 14 O -0.58 -15.56 15.65 5.54 0.09 -15.48 16 15 C -0.13 -2.37 4.29 -27.88 -0.12 -2.49 16 16 C 0.00 -0.08 5.13 -27.88 -0.14 -0.22 16 17 C 0.20 3.31 7.60 -12.94 -0.10 3.21 16 18 N -0.49 -7.87 11.29 -11.10 -0.13 -7.99 16 19 C -0.04 -0.52 11.24 -17.77 -0.20 -0.72 16 20 C -0.05 -0.58 5.69 -35.69 -0.20 -0.79 16 21 C 0.02 0.18 0.93 -155.66 -0.15 0.03 16 22 C -0.14 -1.01 8.35 37.15 0.31 -0.70 16 23 C -0.15 -1.31 8.07 37.16 0.30 -1.01 16 24 C -0.14 -1.06 8.35 37.16 0.31 -0.75 16 25 O -0.19 -2.99 10.24 5.37 0.05 -2.94 16 26 H 0.20 3.35 7.80 -54.09 -0.42 2.93 16 27 H 0.11 2.44 6.60 -51.93 -0.34 2.10 16 28 H 0.06 1.16 6.70 -51.93 -0.35 0.82 16 29 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 30 H 0.08 1.45 7.42 -51.93 -0.39 1.07 16 31 H 0.08 1.55 7.49 -51.93 -0.39 1.16 16 32 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 33 H 0.11 1.90 8.10 -51.93 -0.42 1.48 16 34 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.42 8.02 -51.93 -0.42 0.00 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.43 8.02 -51.93 -0.42 0.02 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -31.73 365.56 -5.91 -37.63 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.47 Total: 4.56 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.16 Total: -3.46 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.10 Total: -41.13 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.14 Total: -18.41 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.73 -5.91 -37.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281978710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.135 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds