Wall clock time and date at job start Tue Mar 31 2020 07:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46954 * 82.58155 * 3 2 1 5 5 C 1.37097 * 120.00120 * 263.92652 * 4 3 2 6 6 H 1.08000 * 119.99766 * 199.75780 * 5 4 3 7 7 C 1.38947 * 119.99819 * 19.75747 * 5 4 3 8 8 N 1.31411 * 120.00455 * 21.74447 * 7 5 4 9 9 Si 1.86805 * 119.99809 * 201.74641 * 7 5 4 10 10 H 1.48503 * 109.47056 * 89.99815 * 9 7 5 11 11 H 1.48494 * 109.47268 * 209.99776 * 9 7 5 12 12 H 1.48498 * 109.46917 * 329.99806 * 9 7 5 13 13 C 1.34771 * 119.99443 * 83.92925 * 4 3 2 14 14 O 1.21296 * 119.99527 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00715 * 359.97438 * 13 4 3 16 16 C 1.52996 * 109.47278 * 180.02562 * 15 13 4 17 17 C 1.50706 * 109.47034 * 179.97438 * 16 15 13 18 18 N 1.30260 * 125.61663 * 90.02273 * 17 16 15 19 19 C 1.34472 * 108.70087 * 179.97438 * 18 17 16 20 20 C 1.34329 * 107.66911 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.44556 * 180.02562 * 20 19 18 22 22 C 1.52994 * 109.47080 * 60.00030 * 21 20 19 23 23 C 1.53007 * 109.47228 * 180.02562 * 21 20 19 24 24 C 1.53002 * 109.47033 * 300.00080 * 21 20 19 25 25 O 1.33962 * 125.62104 * 269.71768 * 17 16 15 26 26 H 4.40643 * 5.51542 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.46691 * 322.58548 * 3 2 1 28 28 H 1.08998 * 109.47010 * 202.58371 * 3 2 1 29 29 H 0.96993 * 120.00226 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46907 * 59.99541 * 15 13 4 31 31 H 1.08999 * 109.46863 * 299.99977 * 15 13 4 32 32 H 1.09003 * 109.47359 * 60.00350 * 16 15 13 33 33 H 1.08999 * 109.47065 * 299.99743 * 16 15 13 34 34 H 1.08001 * 126.16670 * 180.02562 * 19 18 17 35 35 H 1.09006 * 109.47065 * 60.00402 * 22 21 20 36 36 H 1.09002 * 109.47379 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.47331 * 300.00341 * 22 21 20 38 38 H 1.08998 * 109.47008 * 59.99839 * 23 21 20 39 39 H 1.09002 * 109.46990 * 180.02562 * 23 21 20 40 40 H 1.08999 * 109.46747 * 299.99640 * 23 21 20 41 41 H 1.09002 * 109.46824 * 59.99998 * 24 21 20 42 42 H 1.09002 * 109.46972 * 179.97438 * 24 21 20 43 43 H 1.08998 * 109.47365 * 300.00261 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1775 -1.3697 5 6 3.4819 -1.4261 -1.8167 6 1 4.1252 -1.5317 -2.6777 7 6 3.0064 -2.5556 -1.1618 8 7 1.9254 -2.4781 -0.4187 9 14 3.9039 -4.1844 -1.3379 10 1 4.9300 -4.3021 -0.2708 11 1 2.9324 -5.3007 -1.2156 12 1 4.5630 -4.2452 -2.6672 13 6 3.2421 0.8862 -2.1903 14 8 3.6469 0.7388 -3.3242 15 6 2.8597 2.2587 -1.6992 16 6 3.0742 3.2791 -2.8189 17 6 2.6911 4.6515 -2.3279 18 7 3.4909 5.5001 -1.7474 19 6 2.7973 6.6136 -1.4520 20 6 1.5337 6.4294 -1.8689 21 6 0.3987 7.4134 -1.7479 22 6 0.7545 8.6973 -2.5000 23 6 -0.8701 6.8048 -2.3486 24 6 0.1592 7.7367 -0.2718 25 8 1.4735 5.2020 -2.4218 26 1 -1.0500 0.0002 -0.0002 27 1 3.0097 -0.8154 0.6244 28 1 3.0089 0.9497 0.3947 29 1 1.5938 -3.2664 0.0387 30 1 3.4789 2.5235 -0.8421 31 1 1.8106 2.2595 -1.4035 32 1 2.4546 3.0141 -3.6756 33 1 4.1232 3.2784 -3.1150 34 1 3.1860 7.4967 -0.9669 35 1 0.9250 8.4669 -3.5517 36 1 -0.0663 9.4092 -2.4122 37 1 1.6583 9.1307 -2.0718 38 1 -1.1234 5.8902 -1.8124 39 1 -1.6910 7.5166 -2.2615 40 1 -0.6998 6.5741 -3.4002 41 1 1.0630 8.1701 0.1565 42 1 -0.6615 8.4487 -0.1843 43 1 -0.0942 6.8220 0.2641 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281978710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:47 Heat of formation + Delta-G solvation = 17.166294 kcal Electronic energy + Delta-G solvation = -24581.801045 eV Core-core repulsion = 21015.737419 eV Total energy + Delta-G solvation = -3566.063626 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -44.40015 -40.59255 -38.02849 -37.17958 -35.84334 -34.70787 -33.84810 -33.03568 -30.06598 -28.38652 -28.19696 -28.17812 -27.14211 -25.35703 -23.73151 -22.33657 -20.71228 -20.60834 -19.68582 -18.54071 -18.27332 -17.64123 -17.55205 -16.62314 -16.53017 -16.03660 -15.92902 -15.23095 -14.99177 -14.96583 -14.63585 -14.34086 -14.16675 -13.98058 -13.82918 -13.45340 -13.27611 -13.14440 -13.10536 -12.76685 -12.62457 -12.61032 -12.48613 -12.30748 -12.18695 -12.13461 -12.00353 -11.90270 -11.41527 -11.16893 -11.09862 -10.67852 -10.37779 -9.82799 -9.61946 -8.31340 -5.93683 0.42389 1.37369 1.43769 1.54104 1.61143 1.66891 1.87853 2.13313 2.32568 2.38123 2.91219 3.04805 3.31299 3.57400 3.81784 3.85571 3.88473 3.94294 3.98190 4.09577 4.17490 4.24209 4.45823 4.62838 4.69262 4.73130 4.73560 4.81191 4.83637 4.87437 4.92041 4.95842 4.96221 5.03120 5.09857 5.25211 5.32175 5.37115 5.38256 5.40417 5.48592 6.06205 6.43191 6.74369 7.13038 7.14279 7.40624 7.96424 8.67034 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.003122 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.800077 B = 8965.062761 C = 9553.153126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.155 4.155 3 C 0.234 3.766 4 N -0.450 5.450 5 C -0.354 4.354 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.870 5.870 9 Si 0.983 3.017 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.445 3.555 14 O -0.623 6.623 15 C -0.109 4.109 16 C 0.005 3.995 17 C 0.184 3.816 18 N -0.500 5.500 19 C -0.051 4.051 20 C -0.038 4.038 21 C 0.018 3.982 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.138 4.138 25 O -0.207 6.207 26 H 0.232 0.768 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.272 0.728 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.207 0.793 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 20.377 3.714 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.156 4.156 3 C 0.111 3.889 4 N -0.168 5.168 5 C -0.481 4.481 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.507 5.507 9 Si 0.808 3.192 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.235 3.765 14 O -0.510 6.510 15 C -0.150 4.150 16 C -0.033 4.033 17 C -0.022 4.022 18 N -0.230 5.230 19 C -0.190 4.190 20 C -0.091 4.091 21 C 0.017 3.983 22 C -0.194 4.194 23 C -0.203 4.203 24 C -0.195 4.195 25 O -0.094 6.094 26 H 0.249 0.751 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.223 0.777 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.277 20.008 3.394 20.969 hybrid contribution -0.467 -1.265 -0.326 1.388 sum -5.744 18.743 3.068 19.842 Atomic orbital electron populations 1.25118 0.96338 1.04736 1.00044 1.23416 0.94979 0.96978 1.00234 1.18282 0.84655 1.01556 0.84373 1.43867 1.55838 1.06557 1.10499 1.19577 1.29696 0.82507 1.16348 0.90525 1.25981 0.95234 1.02041 0.96688 1.70176 1.18061 1.31494 1.30921 0.85088 0.78219 0.77184 0.78756 1.18963 1.20449 1.20206 1.20675 0.83269 0.87254 0.85267 1.90493 1.52849 1.86829 1.20840 1.21381 1.03457 0.90812 0.99376 1.19608 1.04010 0.81971 0.97724 1.26178 0.78334 0.97853 0.99839 1.70444 1.34246 1.02653 1.15619 1.23415 0.90573 0.98834 1.06135 1.24164 0.99482 0.84962 1.00501 1.19368 0.89147 0.90956 0.98822 1.21936 1.03514 0.94523 0.99379 1.21893 0.96708 1.01269 1.00413 1.21944 1.03693 1.02216 0.91613 1.84413 1.35235 1.27649 1.62110 0.75143 0.89091 0.88584 0.91833 0.87915 0.89372 0.89098 0.87508 0.77656 0.93225 0.88921 0.91094 0.93405 0.89136 0.93244 0.91079 0.88914 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.71 19.25 74.32 1.43 -8.28 16 2 C -0.15 -6.80 10.75 31.13 0.33 -6.47 16 3 C 0.23 10.28 4.91 84.57 0.42 10.70 16 4 N -0.45 -22.97 2.60 -645.40 -1.68 -24.65 16 5 C -0.35 -19.88 9.28 84.04 0.78 -19.10 16 6 H 0.08 4.63 7.42 -2.91 -0.02 4.60 16 7 C 0.00 0.23 4.83 84.93 0.41 0.64 16 8 N -0.87 -45.32 9.59 21.66 0.21 -45.12 16 9 Si 0.98 42.00 29.61 68.60 2.03 44.03 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.45 21.73 7.56 87.66 0.66 22.39 16 14 O -0.62 -34.72 15.65 -3.08 -0.05 -34.77 16 15 C -0.11 -4.08 4.29 29.85 0.13 -3.96 16 16 C 0.01 0.19 5.13 29.85 0.15 0.34 16 17 C 0.18 5.97 7.60 88.34 0.67 6.64 16 18 N -0.50 -15.87 11.29 -303.83 -3.43 -19.30 16 19 C -0.05 -1.27 11.24 83.40 0.94 -0.34 16 20 C -0.04 -0.92 5.69 24.79 0.14 -0.78 16 21 C 0.02 0.28 0.93 -52.93 -0.05 0.23 16 22 C -0.14 -1.58 8.35 71.98 0.60 -0.98 16 23 C -0.15 -2.38 8.07 71.98 0.58 -1.80 16 24 C -0.14 -1.68 8.35 71.98 0.60 -1.08 16 25 O -0.21 -6.33 10.24 -3.71 -0.04 -6.36 16 26 H 0.23 7.17 7.80 -4.42 -0.03 7.13 16 27 H 0.09 4.23 6.60 -2.39 -0.02 4.22 16 28 H 0.10 3.47 6.70 -2.39 -0.02 3.46 16 29 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.10 3.45 7.42 -2.39 -0.02 3.44 16 31 H 0.09 3.23 7.49 -2.39 -0.02 3.21 16 32 H 0.09 3.21 8.10 -2.39 -0.02 3.19 16 33 H 0.11 3.76 8.10 -2.39 -0.02 3.74 16 34 H 0.21 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.71 8.02 -2.39 -0.02 0.69 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.75 8.02 -2.39 -0.02 0.73 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -69.99 365.56 5.83 -64.15 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.99 Total: 23.85 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 7.80 Total: -1.83 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -4.90 Total: -89.07 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.09 Total: -41.13 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -69.99 5.83 -64.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281978710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.319 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds