Wall clock time and date at job start Tue Mar 31 2020 08:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 C 1.52995 * 109.46970 * 119.99874 * 2 1 3 5 5 C 1.53005 * 109.47348 * 54.99995 * 4 2 1 6 6 N 1.46503 * 109.47363 * 174.99666 * 4 2 1 7 7 C 1.34771 * 120.00234 * 179.97438 * 6 4 2 8 8 O 1.21587 * 120.00183 * 0.02562 * 7 6 4 9 9 C 1.47641 * 119.99862 * 179.97438 * 7 6 4 10 10 C 1.40012 * 119.89582 * 359.73073 * 9 7 6 11 11 C 1.36324 * 120.10423 * 179.71537 * 10 9 7 12 12 C 1.40881 * 119.89296 * 0.55214 * 11 10 9 13 13 C 1.41112 * 120.10248 * 179.69634 * 12 11 10 14 14 H 1.08003 * 119.99716 * 155.08587 * 13 12 11 15 15 C 1.40224 * 119.99989 * 335.08604 * 13 12 11 16 16 N 1.30643 * 119.99860 * 342.20584 * 15 13 12 17 17 Si 1.86797 * 119.99674 * 162.20583 * 15 13 12 18 18 H 1.48500 * 109.47416 * 94.66325 * 17 15 13 19 19 H 1.48506 * 109.46974 * 214.66177 * 17 15 13 20 20 H 1.48498 * 109.47280 * 334.66014 * 17 15 13 21 21 C 1.40888 * 119.79101 * 359.72351 * 12 11 10 22 22 C 1.36315 * 119.89548 * 359.97438 * 21 12 11 23 23 C 1.50703 * 109.47377 * 294.99970 * 4 2 1 24 24 N 1.34776 * 119.99701 * 275.00148 * 23 4 2 25 25 O 1.21278 * 119.99924 * 95.00123 * 23 4 2 26 26 H 1.09002 * 109.47345 * 300.00183 * 1 2 3 27 27 H 1.09004 * 109.47132 * 59.99946 * 1 2 3 28 28 H 1.08995 * 109.47596 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46881 * 239.99897 * 2 1 3 30 30 H 1.09000 * 109.47399 * 299.99499 * 3 2 1 31 31 H 1.08997 * 109.47409 * 60.00220 * 3 2 1 32 32 H 1.09005 * 109.46878 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47635 * 179.97438 * 5 4 2 34 34 H 1.09009 * 109.46664 * 300.00098 * 5 4 2 35 35 H 1.09000 * 109.47167 * 59.99516 * 5 4 2 36 36 H 0.97008 * 119.99469 * 0.02562 * 6 4 2 37 37 H 1.08005 * 119.94884 * 359.97438 * 10 9 7 38 38 H 1.08003 * 120.04677 * 180.25510 * 11 10 9 39 39 H 0.97003 * 119.99534 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.05002 * 179.97438 * 21 12 11 41 41 H 1.08000 * 119.94827 * 179.97438 * 22 21 12 42 42 H 0.96998 * 120.00328 * 359.97438 * 24 23 4 43 43 H 0.96996 * 119.99692 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4299 -2.1229 1.3137 6 7 3.5000 -0.8265 1.1906 7 6 4.1730 -1.4283 2.1912 8 8 3.5684 -1.8844 3.1424 9 6 5.6444 -1.5348 2.1318 10 6 6.3378 -1.0149 1.0322 11 6 7.6969 -1.1057 0.9757 12 6 8.4026 -1.7344 2.0204 13 6 9.8088 -1.8366 1.9634 14 1 10.3807 -1.9319 2.8746 15 6 10.4637 -1.8145 0.7237 16 7 9.7938 -2.0485 -0.3732 17 14 12.2940 -1.4504 0.6407 18 1 13.0526 -2.7269 0.6272 19 1 12.5908 -0.6851 -0.5969 20 1 12.6937 -0.6496 1.8257 21 6 7.6998 -2.2612 3.1220 22 6 6.3414 -2.1602 3.1727 23 6 1.6413 0.0571 2.4766 24 7 2.4111 1.0757 2.9081 25 8 0.6278 -0.2332 3.0760 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.7935 -2.6369 2.2034 34 1 0.3435 -2.0446 1.3574 35 1 1.7182 -2.6858 0.4260 36 1 3.9824 -0.4622 0.4319 37 1 5.7956 -0.5373 0.2295 38 1 8.2312 -0.7006 0.1290 39 1 10.2468 -2.0328 -1.2308 40 1 8.2366 -2.7444 3.9251 41 1 5.8018 -2.5641 4.0165 42 1 3.2219 1.3077 2.4288 43 1 2.1547 1.5764 3.6982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288022319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:35 Heat of formation + Delta-G solvation = -90.389455 kcal Electronic energy + Delta-G solvation = -25400.553047 eV Core-core repulsion = 21829.825454 eV Total energy + Delta-G solvation = -3570.727593 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02503 -40.13822 -38.82006 -37.50796 -35.65851 -34.67939 -34.24937 -32.18644 -31.27769 -30.73505 -28.20588 -27.37991 -25.60120 -23.87940 -23.00321 -22.76821 -21.06673 -20.40466 -19.35931 -18.90049 -18.08707 -17.94020 -17.17699 -16.66667 -16.04956 -15.72887 -15.70114 -15.53328 -15.06172 -15.00734 -14.59286 -14.47540 -14.26463 -13.93899 -13.70824 -13.58261 -13.18981 -13.18439 -13.07208 -12.83360 -12.75892 -12.58415 -12.35678 -12.14574 -12.04854 -11.78328 -11.75300 -11.35678 -11.13101 -11.07302 -10.61251 -10.56112 -10.08916 -9.55043 -9.39187 -8.78388 -6.46877 0.45486 1.17378 1.39753 1.43287 1.55537 1.56997 2.10189 2.18342 2.25612 2.60499 2.81107 3.54218 3.69303 3.77288 3.95882 4.12725 4.21319 4.34466 4.42757 4.45884 4.54931 4.72727 4.78120 4.79390 4.94349 4.95955 4.96787 5.04843 5.09171 5.17187 5.25331 5.31520 5.33920 5.42349 5.48606 5.60541 5.82757 5.87009 5.96361 6.01167 6.25407 6.37736 6.55898 6.69326 6.79213 6.90871 7.29175 7.44475 8.16782 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.003418 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.953409 B = 8190.330967 C = 8654.110614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.162 4.162 4 C 0.166 3.834 5 C -0.152 4.152 6 N -0.714 5.714 7 C 0.576 3.424 8 O -0.590 6.590 9 C -0.288 4.288 10 C -0.049 4.049 11 C -0.196 4.196 12 C 0.103 3.897 13 C -0.476 4.476 14 H 0.082 0.918 15 C 0.041 3.959 16 N -0.796 5.796 17 Si 0.984 3.016 18 H -0.264 1.264 19 H -0.260 1.260 20 H -0.259 1.259 21 C -0.254 4.254 22 C -0.033 4.033 23 C 0.530 3.470 24 N -0.837 5.837 25 O -0.584 6.584 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.414 0.586 37 H 0.131 0.869 38 H 0.115 0.885 39 H 0.297 0.703 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.409 0.591 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 8.256 -6.846 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.219 4.219 4 C 0.076 3.924 5 C -0.210 4.210 6 N -0.370 5.370 7 C 0.370 3.630 8 O -0.473 6.473 9 C -0.293 4.293 10 C -0.068 4.068 11 C -0.215 4.215 12 C 0.100 3.900 13 C -0.503 4.503 14 H 0.100 0.900 15 C -0.178 4.178 16 N -0.419 5.419 17 Si 0.804 3.196 18 H -0.189 1.189 19 H -0.184 1.184 20 H -0.182 1.182 21 C -0.274 4.274 22 C -0.052 4.052 23 C 0.315 3.685 24 N -0.400 5.400 25 O -0.463 6.463 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.253 0.747 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.240 0.760 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.326 7.599 -6.206 13.537 hybrid contribution 1.363 0.117 0.236 1.388 sum -7.963 7.717 -5.970 12.594 Atomic orbital electron populations 1.21915 0.93293 1.02862 1.02489 1.21395 0.97430 0.97185 0.94727 1.22110 1.01995 0.94350 1.03481 1.20610 0.81050 0.96261 0.94463 1.22087 1.01669 0.94599 1.02676 1.45891 1.05495 1.61173 1.24448 1.18409 0.87470 0.75902 0.81266 1.90679 1.70604 1.50492 1.35510 1.19093 0.91027 1.18318 1.00852 1.20739 0.94109 0.96581 0.95365 1.21015 0.93780 1.05380 1.01347 1.18120 0.93942 0.86784 0.91170 1.20108 0.92486 1.43260 0.94441 0.89997 1.26843 1.05877 0.90941 0.94134 1.69747 1.41019 1.30719 1.00435 0.85155 0.75478 0.79500 0.79492 1.18862 1.18407 1.18233 1.20823 0.93720 1.10433 1.02402 1.20480 0.93769 0.94754 0.96246 1.20875 0.82517 0.79530 0.85587 1.43802 1.28267 1.34999 1.32928 1.90660 1.28146 1.68716 1.58749 0.94040 0.89618 0.91868 0.87153 0.89658 0.92742 0.91261 0.93754 0.90264 0.90312 0.74679 0.85156 0.86729 0.89145 0.88346 0.88505 0.76026 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.50 71.98 0.61 -2.01 16 2 C -0.09 -1.57 2.32 -10.80 -0.03 -1.59 16 3 C -0.16 -2.32 8.11 71.98 0.58 -1.74 16 4 C 0.17 4.38 0.48 2.86 0.00 4.38 16 5 C -0.15 -4.53 7.44 71.98 0.54 -3.99 16 6 N -0.71 -19.73 4.04 -429.35 -1.73 -21.46 16 7 C 0.58 21.91 7.03 86.73 0.61 22.52 16 8 O -0.59 -26.73 13.53 -3.99 -0.05 -26.78 16 9 C -0.29 -12.09 5.89 -19.93 -0.12 -12.21 16 10 C -0.05 -1.93 9.47 22.25 0.21 -1.72 16 11 C -0.20 -9.01 8.63 22.47 0.19 -8.81 16 12 C 0.10 5.13 5.57 -21.28 -0.12 5.01 16 13 C -0.48 -23.32 9.04 23.46 0.21 -23.11 16 14 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 15 C 0.04 1.85 5.13 85.35 0.44 2.29 16 16 N -0.80 -36.37 10.97 21.87 0.24 -36.13 16 17 Si 0.98 33.56 29.60 68.60 2.03 35.59 16 18 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 19 H -0.26 -8.29 7.11 99.48 0.71 -7.59 16 20 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 21 C -0.25 -12.25 9.73 22.47 0.22 -12.03 16 22 C -0.03 -1.53 9.52 22.25 0.21 -1.32 16 23 C 0.53 16.40 3.94 87.66 0.35 16.74 16 24 N -0.84 -20.85 7.32 -173.53 -1.27 -22.12 16 25 O -0.58 -22.39 16.36 -3.02 -0.05 -22.44 16 26 H 0.04 0.91 6.97 -2.39 -0.02 0.90 16 27 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.06 1.15 6.34 -2.39 -0.02 1.14 16 29 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.89 6.26 -2.39 -0.01 0.88 16 32 H 0.07 0.89 7.18 -2.38 -0.02 0.87 16 33 H 0.04 1.68 6.16 -2.39 -0.01 1.67 16 34 H 0.08 2.23 6.07 -2.38 -0.01 2.21 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.41 9.13 5.65 -92.70 -0.52 8.61 16 37 H 0.13 3.89 6.37 -2.91 -0.02 3.87 16 38 H 0.11 5.34 6.17 -2.91 -0.02 5.32 16 39 H 0.30 12.02 8.29 -92.71 -0.77 11.25 16 40 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.10 4.45 7.63 -2.91 -0.02 4.43 16 42 H 0.41 8.80 7.64 -92.71 -0.71 8.09 16 43 H 0.40 9.08 8.93 -92.71 -0.83 8.25 16 Total: -1.00 -65.47 342.17 2.09 -63.37 By element: Atomic # 1 Polarization: 48.56 SS G_CDS: -0.98 Total: 47.58 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 3.91 Total: -17.60 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.76 Total: -79.72 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.10 Total: -49.22 kcal Atomic # 14 Polarization: 33.56 SS G_CDS: 2.03 Total: 35.59 kcal Total: -65.47 2.09 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288022319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.015 kcal (2) G-P(sol) polarization free energy of solvation -65.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds