Wall clock time and date at job start Tue Mar 31 2020 08:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47133 * 2 1 4 4 C 1.53002 * 109.46701 * 119.99662 * 2 1 3 5 5 C 1.52995 * 109.46966 * 185.00048 * 4 2 1 6 6 N 1.46496 * 109.47093 * 65.00132 * 4 2 1 7 7 C 1.34780 * 120.00019 * 179.97438 * 6 4 2 8 8 O 1.21542 * 119.99956 * 0.02562 * 7 6 4 9 9 C 1.47882 * 119.99833 * 180.02562 * 7 6 4 10 10 C 1.39920 * 120.03055 * 359.72167 * 9 7 6 11 11 C 1.38325 * 120.36325 * 179.71935 * 10 9 7 12 12 C 1.37751 * 120.40967 * 0.56117 * 11 10 9 13 13 C 1.40751 * 120.04120 * 359.72099 * 12 11 10 14 14 C 1.41432 * 120.18020 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00277 * 150.18319 * 14 13 12 16 16 C 1.39938 * 119.99988 * 330.17370 * 14 13 12 17 17 N 1.30830 * 119.99864 * 161.73083 * 16 14 13 18 18 Si 1.86798 * 119.99856 * 341.73627 * 16 14 13 19 19 H 1.48501 * 109.47243 * 95.41118 * 18 16 14 20 20 H 1.48504 * 109.47004 * 215.40865 * 18 16 14 21 21 H 1.48499 * 109.47163 * 335.40639 * 18 16 14 22 22 C 1.38997 * 120.02502 * 180.02562 * 9 7 6 23 23 C 1.50700 * 109.47383 * 305.00159 * 4 2 1 24 24 N 1.34775 * 120.00020 * 84.99623 * 23 4 2 25 25 O 1.21276 * 120.00116 * 265.00393 * 23 4 2 26 26 H 1.08999 * 109.47207 * 300.00437 * 1 2 3 27 27 H 1.08999 * 109.46595 * 60.00027 * 1 2 3 28 28 H 1.08996 * 109.46913 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47207 * 239.99563 * 2 1 3 30 30 H 1.08989 * 109.47120 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46760 * 300.00222 * 3 2 1 32 32 H 1.09005 * 109.46679 * 59.99266 * 3 2 1 33 33 H 1.09005 * 109.47353 * 60.00084 * 5 4 2 34 34 H 1.09006 * 109.47342 * 300.00289 * 5 4 2 35 35 H 1.09004 * 109.47453 * 179.97438 * 5 4 2 36 36 H 0.97005 * 120.00055 * 0.02562 * 6 4 2 37 37 H 1.08009 * 119.81804 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.79801 * 180.25615 * 11 10 9 39 39 H 1.08005 * 119.98298 * 179.74457 * 12 11 10 40 40 H 0.97001 * 119.99541 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.20355 * 359.97005 * 22 9 7 42 42 H 0.97001 * 120.00097 * 0.02562 * 24 23 4 43 43 H 0.97002 * 120.00002 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6133 1.3138 6 7 1.6524 -2.1328 1.1907 7 6 1.9963 -2.9681 2.1909 8 8 2.6276 -2.5503 3.1417 9 6 1.6055 -4.3932 2.1314 10 6 0.8737 -4.8736 1.0399 11 6 0.5096 -6.2064 0.9744 12 6 0.8529 -7.0737 1.9880 13 6 1.5839 -6.6075 3.0969 14 6 1.9384 -7.4955 4.1390 15 1 2.8404 -7.3270 4.7087 16 6 1.1205 -8.5924 4.4322 17 7 1.5956 -9.5965 5.1234 18 14 -0.6497 -8.6231 3.8365 19 1 -0.7278 -9.3691 2.5548 20 1 -1.5020 -9.2927 4.8516 21 1 -1.1266 -7.2321 3.6296 22 6 1.9595 -5.2551 3.1629 23 6 1.4390 -0.0859 2.4766 24 7 0.2220 -0.4720 2.9080 25 8 2.0505 0.7730 3.0760 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.8532 0.4370 1.3575 34 1 3.9994 -1.0728 0.4261 35 1 3.9281 -1.1267 2.2041 36 1 1.1488 -2.4664 0.4316 37 1 0.5952 -4.2009 0.2421 38 1 -0.0517 -6.5684 0.1256 39 1 0.5615 -8.1122 1.9318 40 1 1.0287 -10.3570 5.3263 41 1 2.5205 -4.8877 4.0095 42 1 -0.2670 -1.1591 2.4288 43 1 -0.1647 -0.0633 3.6982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288155921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:40 Heat of formation + Delta-G solvation = -65.278275 kcal Electronic energy + Delta-G solvation = -25528.137662 eV Core-core repulsion = 21958.498972 eV Total energy + Delta-G solvation = -3569.638690 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96927 -38.87659 -37.38207 -36.47419 -33.84651 -33.60681 -33.16526 -31.00886 -30.22705 -29.49984 -27.24693 -25.35188 -24.66110 -23.09488 -22.17032 -20.78705 -20.01348 -19.35520 -18.15827 -17.34002 -16.92715 -16.45598 -15.91924 -15.46643 -14.80787 -14.68268 -14.53871 -14.42222 -13.78891 -13.72631 -13.62120 -13.40866 -12.90457 -12.82490 -12.69003 -12.47442 -12.12859 -12.02035 -11.84916 -11.69664 -11.35926 -11.26558 -11.10367 -11.04334 -10.84715 -10.59836 -10.08417 -10.02756 -9.78432 -9.53579 -9.46494 -9.18234 -8.94899 -7.95384 -7.83812 -7.06650 -4.61919 1.81047 2.44395 2.65743 2.99868 3.12184 3.19074 3.25711 3.45997 3.64006 3.86862 4.35582 4.41121 4.58160 4.70825 4.97119 5.14025 5.23558 5.27026 5.35150 5.41739 5.54445 5.61188 5.71993 5.76662 5.77009 5.85986 5.93473 5.96546 6.05520 6.31607 6.39321 6.50909 6.58781 6.61440 6.83628 6.90350 7.13223 7.31610 7.37909 7.41946 7.65171 7.69870 7.91201 8.21947 8.33359 8.45980 8.56869 8.64870 9.95410 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.003726 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.417977 B = 7513.700534 C = 7791.578435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.093 4.093 3 C -0.150 4.150 4 C 0.165 3.835 5 C -0.155 4.155 6 N -0.731 5.731 7 C 0.562 3.438 8 O -0.530 6.530 9 C -0.108 4.108 10 C -0.219 4.219 11 C -0.082 4.082 12 C -0.222 4.222 13 C 0.082 3.918 14 C -0.441 4.441 15 H 0.094 0.906 16 C 0.083 3.917 17 N -0.801 5.801 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.289 1.289 21 H -0.244 1.244 22 C -0.135 4.135 23 C 0.535 3.465 24 N -0.849 5.849 25 O -0.540 6.540 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.403 0.597 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.287 0.713 41 H 0.115 0.885 42 H 0.400 0.600 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 13.910 -11.706 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.113 4.113 3 C -0.208 4.208 4 C 0.075 3.925 5 C -0.213 4.213 6 N -0.387 5.387 7 C 0.353 3.647 8 O -0.407 6.407 9 C -0.112 4.112 10 C -0.239 4.239 11 C -0.100 4.100 12 C -0.241 4.241 13 C 0.079 3.921 14 C -0.469 4.469 15 H 0.112 0.888 16 C -0.137 4.137 17 N -0.425 5.425 18 Si 0.738 3.262 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.167 1.167 22 C -0.155 4.155 23 C 0.319 3.681 24 N -0.413 5.413 25 O -0.416 6.416 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.229 0.771 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.552 14.499 -10.572 18.512 hybrid contribution -1.456 -0.775 -0.482 1.718 sum -6.008 13.724 -11.055 18.618 Atomic orbital electron populations 1.22095 0.94497 1.02426 1.02965 1.21334 0.96477 0.97345 0.96100 1.21924 1.02071 0.94387 1.02398 1.20534 0.96811 0.81638 0.93489 1.22137 0.91776 1.03497 1.03913 1.46198 1.59640 1.07764 1.25144 1.18880 0.78126 0.86459 0.81260 1.90736 1.39184 1.77602 1.33160 1.19374 1.03229 0.90938 0.97610 1.20354 1.08600 0.95821 0.99131 1.20505 0.98668 0.93345 0.97478 1.21181 1.08460 0.98597 0.95900 1.17690 0.90593 0.91416 0.92383 1.19546 1.08681 1.04628 1.14070 0.88814 1.26188 1.01490 0.93168 0.92849 1.69693 1.38101 1.04957 1.29713 0.86291 0.81197 0.80785 0.77894 1.19517 1.21616 1.16722 1.21284 1.04054 0.92285 0.97852 1.20495 0.80727 0.81638 0.85280 1.43893 1.20228 1.44129 1.33009 1.90699 1.60780 1.32802 1.57292 0.91762 0.91692 0.92089 0.89205 0.91492 0.92073 0.91918 0.90590 0.91884 0.89796 0.75982 0.88646 0.88272 0.87890 0.90237 0.86688 0.77054 0.77119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.11 37.16 0.30 -0.93 16 2 C -0.09 -0.84 2.32 -90.61 -0.21 -1.05 16 3 C -0.15 -1.34 8.50 37.16 0.32 -1.03 16 4 C 0.16 2.08 0.48 -132.97 -0.06 2.02 16 5 C -0.16 -2.16 7.44 37.15 0.28 -1.88 16 6 N -0.73 -9.60 4.04 -49.61 -0.20 -9.80 16 7 C 0.56 10.11 7.05 -12.31 -0.09 10.03 16 8 O -0.53 -11.33 13.54 5.33 0.07 -11.26 16 9 C -0.11 -2.15 5.87 -105.04 -0.62 -2.77 16 10 C -0.22 -3.87 9.55 -38.92 -0.37 -4.24 16 11 C -0.08 -1.56 10.01 -39.73 -0.40 -1.96 16 12 C -0.22 -4.95 7.17 -38.81 -0.28 -5.23 16 13 C 0.08 2.00 5.10 -106.87 -0.55 1.45 16 14 C -0.44 -11.60 9.57 -37.73 -0.36 -11.96 16 15 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 16 C 0.08 2.09 5.40 -17.34 -0.09 2.00 16 17 N -0.80 -20.75 13.93 55.55 0.77 -19.97 16 18 Si 0.91 19.75 24.52 -169.99 -4.17 15.58 16 19 H -0.27 -5.58 6.71 56.52 0.38 -5.20 16 20 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.24 -5.37 6.86 56.52 0.39 -4.98 16 22 C -0.13 -3.11 9.34 -38.44 -0.36 -3.47 16 23 C 0.54 7.89 3.94 -10.99 -0.04 7.84 16 24 N -0.85 -10.23 7.32 31.22 0.23 -10.00 16 25 O -0.54 -9.80 16.36 5.56 0.09 -9.71 16 26 H 0.06 0.54 6.26 -51.93 -0.32 0.21 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.42 7.18 -51.93 -0.37 0.04 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.60 6.34 -51.93 -0.33 0.27 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.67 6.97 -51.93 -0.36 0.31 16 33 H 0.08 0.99 6.07 -51.93 -0.32 0.68 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.47 6.16 -51.93 -0.32 1.15 16 36 H 0.40 4.28 5.67 -40.82 -0.23 4.04 16 37 H 0.10 1.29 6.38 -52.48 -0.33 0.96 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.10 2.29 4.72 -52.48 -0.25 2.04 16 40 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 41 H 0.12 2.75 7.64 -52.48 -0.40 2.35 16 42 H 0.40 4.21 7.64 -40.82 -0.31 3.90 16 43 H 0.40 4.35 8.93 -40.82 -0.36 3.98 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -30.56 337.16 -6.28 -36.83 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -5.62 Total: 14.41 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.53 Total: -11.17 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.80 Total: -39.77 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.16 Total: -20.97 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.17 Total: 15.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.56 -6.28 -36.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288155921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.446 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds