Wall clock time and date at job start Tue Mar 31 2020 08:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47133 * 2 1 4 4 C 1.53002 * 109.46701 * 119.99662 * 2 1 3 5 5 C 1.52995 * 109.46966 * 185.00048 * 4 2 1 6 6 N 1.46496 * 109.47093 * 65.00132 * 4 2 1 7 7 C 1.34780 * 120.00019 * 179.97438 * 6 4 2 8 8 O 1.21542 * 119.99956 * 0.02562 * 7 6 4 9 9 C 1.47882 * 119.99833 * 180.02562 * 7 6 4 10 10 C 1.39920 * 120.03055 * 359.72167 * 9 7 6 11 11 C 1.38325 * 120.36325 * 179.71935 * 10 9 7 12 12 C 1.37751 * 120.40967 * 0.56117 * 11 10 9 13 13 C 1.40751 * 120.04120 * 359.72099 * 12 11 10 14 14 C 1.41432 * 120.18020 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00277 * 150.18319 * 14 13 12 16 16 C 1.39938 * 119.99988 * 330.17370 * 14 13 12 17 17 N 1.30830 * 119.99864 * 161.73083 * 16 14 13 18 18 Si 1.86798 * 119.99856 * 341.73627 * 16 14 13 19 19 H 1.48501 * 109.47243 * 95.41118 * 18 16 14 20 20 H 1.48504 * 109.47004 * 215.40865 * 18 16 14 21 21 H 1.48499 * 109.47163 * 335.40639 * 18 16 14 22 22 C 1.38997 * 120.02502 * 180.02562 * 9 7 6 23 23 C 1.50700 * 109.47383 * 305.00159 * 4 2 1 24 24 N 1.34775 * 120.00020 * 84.99623 * 23 4 2 25 25 O 1.21276 * 120.00116 * 265.00393 * 23 4 2 26 26 H 1.08999 * 109.47207 * 300.00437 * 1 2 3 27 27 H 1.08999 * 109.46595 * 60.00027 * 1 2 3 28 28 H 1.08996 * 109.46913 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47207 * 239.99563 * 2 1 3 30 30 H 1.08989 * 109.47120 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46760 * 300.00222 * 3 2 1 32 32 H 1.09005 * 109.46679 * 59.99266 * 3 2 1 33 33 H 1.09005 * 109.47353 * 60.00084 * 5 4 2 34 34 H 1.09006 * 109.47342 * 300.00289 * 5 4 2 35 35 H 1.09004 * 109.47453 * 179.97438 * 5 4 2 36 36 H 0.97005 * 120.00055 * 0.02562 * 6 4 2 37 37 H 1.08009 * 119.81804 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.79801 * 180.25615 * 11 10 9 39 39 H 1.08005 * 119.98298 * 179.74457 * 12 11 10 40 40 H 0.97001 * 119.99541 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.20355 * 359.97005 * 22 9 7 42 42 H 0.97001 * 120.00097 * 0.02562 * 24 23 4 43 43 H 0.97002 * 120.00002 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6133 1.3138 6 7 1.6524 -2.1328 1.1907 7 6 1.9963 -2.9681 2.1909 8 8 2.6276 -2.5503 3.1417 9 6 1.6055 -4.3932 2.1314 10 6 0.8737 -4.8736 1.0399 11 6 0.5096 -6.2064 0.9744 12 6 0.8529 -7.0737 1.9880 13 6 1.5839 -6.6075 3.0969 14 6 1.9384 -7.4955 4.1390 15 1 2.8404 -7.3270 4.7087 16 6 1.1205 -8.5924 4.4322 17 7 1.5956 -9.5965 5.1234 18 14 -0.6497 -8.6231 3.8365 19 1 -0.7278 -9.3691 2.5548 20 1 -1.5020 -9.2927 4.8516 21 1 -1.1266 -7.2321 3.6296 22 6 1.9595 -5.2551 3.1629 23 6 1.4390 -0.0859 2.4766 24 7 0.2220 -0.4720 2.9080 25 8 2.0505 0.7730 3.0760 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.8532 0.4370 1.3575 34 1 3.9994 -1.0728 0.4261 35 1 3.9281 -1.1267 2.2041 36 1 1.1488 -2.4664 0.4316 37 1 0.5952 -4.2009 0.2421 38 1 -0.0517 -6.5684 0.1256 39 1 0.5615 -8.1122 1.9318 40 1 1.0287 -10.3570 5.3263 41 1 2.5205 -4.8877 4.0095 42 1 -0.2670 -1.1591 2.4288 43 1 -0.1647 -0.0633 3.6982 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288155921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:39 Heat of formation + Delta-G solvation = -88.570547 kcal Electronic energy + Delta-G solvation = -25529.147691 eV Core-core repulsion = 21958.498972 eV Total energy + Delta-G solvation = -3570.648719 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15026 -40.32143 -38.97163 -37.59082 -35.59885 -34.72999 -34.35799 -32.54550 -31.83360 -30.72316 -28.01838 -27.07911 -25.81080 -24.55492 -23.16861 -22.46664 -21.41374 -20.47227 -19.64595 -18.64057 -18.05090 -17.97225 -17.37306 -16.66401 -16.48751 -15.94837 -15.87837 -15.58454 -15.35061 -15.04100 -14.61435 -14.57167 -14.47435 -14.26001 -13.91628 -13.57774 -13.35142 -13.20543 -13.11287 -12.83361 -12.72406 -12.67910 -12.27840 -12.17858 -12.05067 -11.78972 -11.74412 -11.55324 -11.18574 -11.13632 -10.74361 -10.62141 -10.21376 -9.61399 -9.55774 -8.91214 -6.55734 0.17683 0.76130 1.25875 1.42739 1.49017 1.51388 1.91066 2.06786 2.12390 2.55462 2.67309 3.45942 3.51535 3.72102 3.84360 3.94595 4.14757 4.28637 4.35366 4.43168 4.54134 4.60037 4.69384 4.77461 4.79646 4.89425 4.93817 4.97557 4.98190 5.10198 5.16060 5.22184 5.28006 5.41267 5.43294 5.44807 5.65929 5.72831 5.83157 5.85856 6.11638 6.30516 6.36006 6.55278 6.66947 6.74089 7.19448 7.27959 8.18191 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.003726 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.417977 B = 7513.700534 C = 7791.578435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.166 3.834 5 C -0.155 4.155 6 N -0.701 5.701 7 C 0.565 3.435 8 O -0.570 6.570 9 C -0.110 4.110 10 C -0.176 4.176 11 C -0.081 4.081 12 C -0.224 4.224 13 C 0.066 3.934 14 C -0.492 4.492 15 H 0.045 0.955 16 C 0.042 3.958 17 N -0.853 5.853 18 Si 0.971 3.029 19 H -0.245 1.245 20 H -0.280 1.280 21 H -0.247 1.247 22 C -0.167 4.167 23 C 0.527 3.473 24 N -0.838 5.838 25 O -0.583 6.583 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.422 0.578 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.105 0.895 40 H 0.295 0.705 41 H 0.083 0.917 42 H 0.410 0.590 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 15.314 -16.920 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.105 4.105 3 C -0.208 4.208 4 C 0.076 3.924 5 C -0.213 4.213 6 N -0.358 5.358 7 C 0.354 3.646 8 O -0.449 6.449 9 C -0.113 4.113 10 C -0.196 4.196 11 C -0.099 4.099 12 C -0.243 4.243 13 C 0.064 3.936 14 C -0.522 4.522 15 H 0.063 0.937 16 C -0.172 4.172 17 N -0.479 5.479 18 Si 0.792 3.208 19 H -0.170 1.170 20 H -0.207 1.207 21 H -0.171 1.171 22 C -0.188 4.188 23 C 0.311 3.689 24 N -0.401 5.401 25 O -0.462 6.462 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.263 0.737 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.241 0.759 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.828 15.898 -15.842 23.770 hybrid contribution -0.394 -0.937 0.973 1.407 sum -8.222 14.961 -14.869 22.639 Atomic orbital electron populations 1.22136 0.92968 1.03529 1.03473 1.21413 0.97697 0.96829 0.94558 1.21933 1.01880 0.94524 1.02460 1.20677 0.95992 0.81027 0.94675 1.22114 0.92966 1.03408 1.02837 1.45865 1.58335 1.07503 1.24103 1.18654 0.77907 0.86237 0.81774 1.90754 1.40951 1.78081 1.35148 1.19620 1.02771 0.91603 0.97332 1.21052 1.03813 0.96303 0.98395 1.21070 0.97964 0.93212 0.97611 1.21404 1.07495 0.99553 0.95891 1.17742 0.91732 0.91405 0.92746 1.19477 1.08835 1.07481 1.16386 0.93691 1.26969 1.05059 0.92263 0.92862 1.69739 1.39755 1.06030 1.32361 0.85421 0.76044 0.80672 0.78623 1.16984 1.20703 1.17050 1.21175 1.05809 0.92918 0.98900 1.20936 0.81047 0.81249 0.85667 1.43830 1.19515 1.43790 1.32979 1.90680 1.61988 1.34896 1.58668 0.93039 0.89574 0.90630 0.86399 0.91909 0.89521 0.94290 0.90261 0.89648 0.94041 0.73743 0.82511 0.83231 0.87763 0.89498 0.89887 0.75887 0.76595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.11 71.98 0.58 -1.03 16 2 C -0.09 -1.15 2.32 -10.79 -0.03 -1.18 16 3 C -0.15 -2.22 8.50 71.98 0.61 -1.61 16 4 C 0.17 3.73 0.48 2.86 0.00 3.73 16 5 C -0.16 -4.12 7.44 71.98 0.54 -3.59 16 6 N -0.70 -15.53 4.04 -429.15 -1.73 -17.27 16 7 C 0.56 19.27 7.05 86.80 0.61 19.88 16 8 O -0.57 -24.86 13.54 -3.85 -0.05 -24.91 16 9 C -0.11 -4.12 5.87 -20.13 -0.12 -4.24 16 10 C -0.18 -5.12 9.55 22.70 0.22 -4.90 16 11 C -0.08 -2.60 10.01 22.17 0.22 -2.38 16 12 C -0.22 -9.48 7.17 22.77 0.16 -9.31 16 13 C 0.07 3.31 5.10 -21.32 -0.11 3.20 16 14 C -0.49 -28.10 9.57 23.47 0.22 -27.87 16 15 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 16 C 0.04 2.26 5.40 85.25 0.46 2.72 16 17 N -0.85 -47.06 13.93 21.83 0.30 -46.75 16 18 Si 0.97 40.58 24.52 68.60 1.68 42.26 16 19 H -0.25 -9.23 6.71 99.48 0.67 -8.56 16 20 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.25 -10.29 6.86 99.48 0.68 -9.61 16 22 C -0.17 -8.02 9.34 23.01 0.21 -7.81 16 23 C 0.53 14.94 3.94 87.66 0.35 15.29 16 24 N -0.84 -18.77 7.32 -173.54 -1.27 -20.04 16 25 O -0.58 -21.44 16.36 -3.02 -0.05 -21.49 16 26 H 0.05 0.66 6.26 -2.39 -0.01 0.65 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.52 7.18 -2.39 -0.02 0.51 16 29 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.97 6.34 -2.39 -0.02 0.96 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.77 6.97 -2.38 -0.02 0.75 16 33 H 0.08 2.03 6.07 -2.38 -0.01 2.02 16 34 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 35 H 0.04 1.47 6.16 -2.38 -0.01 1.46 16 36 H 0.42 6.01 5.67 -92.70 -0.53 5.49 16 37 H 0.16 2.72 6.38 -2.91 -0.02 2.70 16 38 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.10 4.38 4.72 -2.91 -0.01 4.36 16 40 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 41 H 0.08 4.39 7.64 -2.91 -0.02 4.37 16 42 H 0.41 7.33 7.64 -92.71 -0.71 6.62 16 43 H 0.40 8.41 8.93 -92.71 -0.83 7.58 16 Total: -1.00 -76.08 337.16 1.77 -74.31 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -1.05 Total: 32.98 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.94 Total: -19.09 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.70 Total: -84.06 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.10 Total: -46.40 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.68 Total: 42.26 kcal Total: -76.08 1.77 -74.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288155921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.265 kcal (2) G-P(sol) polarization free energy of solvation -76.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds