Wall clock time and date at job start Tue Mar 31 2020 08:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 C 1.53005 * 109.47036 * 119.99731 * 2 1 3 5 5 H 1.08996 * 109.46801 * 184.85360 * 4 2 1 6 6 N 1.46505 * 109.47026 * 304.85431 * 4 2 1 7 7 C 1.34782 * 119.99778 * 274.99753 * 6 4 2 8 8 O 1.21281 * 119.99721 * 0.02562 * 7 6 4 9 9 C 1.50695 * 119.99586 * 179.72498 * 7 6 4 10 10 C 1.50706 * 109.47063 * 180.27820 * 9 7 6 11 11 C 1.38235 * 119.99732 * 269.72926 * 10 9 7 12 12 C 1.38230 * 119.99761 * 179.76388 * 11 10 9 13 13 C 1.38236 * 120.00188 * 0.48859 * 12 11 10 14 14 C 1.38235 * 119.99670 * 359.78428 * 13 12 11 15 15 C 1.38233 * 120.00260 * 359.96026 * 14 13 12 16 16 C 1.50695 * 109.47064 * 64.85417 * 4 2 1 17 17 O 1.21291 * 120.00279 * 257.96496 * 16 4 2 18 18 N 1.34776 * 120.00002 * 77.96868 * 16 4 2 19 19 C 1.37100 * 120.00099 * 175.04450 * 18 16 4 20 20 H 1.08007 * 119.99841 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00354 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00206 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99593 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.47290 * 90.00403 * 23 21 19 25 25 H 1.48502 * 109.46993 * 210.00288 * 23 21 19 26 26 H 1.48504 * 109.47172 * 329.99867 * 23 21 19 27 27 H 1.09004 * 109.47146 * 300.00221 * 1 2 3 28 28 H 1.08994 * 109.47027 * 60.00180 * 1 2 3 29 29 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47200 * 240.00014 * 2 1 3 31 31 H 1.09002 * 109.46818 * 174.19735 * 3 2 1 32 32 H 1.09002 * 109.46825 * 294.19746 * 3 2 1 33 33 H 1.09003 * 109.47258 * 54.19754 * 3 2 1 34 34 H 0.96993 * 119.99633 * 95.00194 * 6 4 2 35 35 H 1.09004 * 109.47514 * 300.27539 * 9 7 6 36 36 H 1.09007 * 109.47035 * 60.27799 * 9 7 6 37 37 H 1.07997 * 120.00266 * 359.97438 * 11 10 9 38 38 H 1.08002 * 120.00027 * 180.24870 * 12 11 10 39 39 H 1.07998 * 120.00243 * 179.76967 * 13 12 11 40 40 H 1.08003 * 120.00289 * 179.97438 * 14 13 12 41 41 H 1.07998 * 120.00382 * 179.97438 * 15 14 13 42 42 H 0.96997 * 119.99895 * 355.03891 * 18 16 4 43 43 H 0.96999 * 119.99902 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1265 -0.6465 1.2938 6 7 1.4586 -0.1013 2.4426 7 6 2.0406 0.9844 2.9895 8 8 3.0453 1.4484 2.4934 9 6 1.4389 1.6258 4.2133 10 6 2.2704 2.8162 4.6168 11 6 3.3180 2.6584 5.5047 12 6 4.0838 3.7494 5.8711 13 6 3.7956 4.9999 5.3573 14 6 2.7444 5.1587 4.4737 15 6 1.9820 4.0667 4.1033 16 6 1.6383 -2.1724 1.1907 17 8 0.6979 -2.5684 1.8465 18 7 2.3240 -3.0305 0.4097 19 6 2.0243 -4.3681 0.4332 20 1 1.2390 -4.7343 1.0780 21 6 2.7315 -5.2529 -0.3717 22 7 2.4439 -6.5349 -0.3495 23 14 4.0902 -4.6195 -1.4863 24 1 5.3819 -4.6418 -0.7542 25 1 4.1878 -5.4854 -2.6888 26 1 3.7809 -3.2279 -1.9022 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1251 1.4443 0.1039 32 1 1.7640 1.9254 -0.9374 33 1 1.5943 1.9855 0.8335 34 1 0.6549 -0.4723 2.8391 35 1 0.4227 1.9512 3.9907 36 1 1.4186 0.9033 5.0293 37 1 3.5404 1.6822 5.9096 38 1 4.9048 3.6254 6.5617 39 1 4.3915 5.8530 5.6464 40 1 2.5189 6.1357 4.0726 41 1 1.1605 4.1908 3.4133 42 1 3.0294 -2.7016 -0.1692 43 1 2.9374 -7.1524 -0.9116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299710530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:46 Heat of formation + Delta-G solvation = -77.643623 kcal Electronic energy + Delta-G solvation = -24918.132286 eV Core-core repulsion = 21347.957394 eV Total energy + Delta-G solvation = -3570.174892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60838 -40.38084 -39.44123 -37.03334 -36.07385 -34.27924 -33.77488 -33.47277 -31.71745 -29.60987 -28.18112 -27.94415 -26.07682 -23.42333 -22.85998 -22.05481 -21.27920 -20.76436 -20.32776 -18.49684 -17.71616 -17.35832 -17.20132 -16.89182 -16.44463 -16.12274 -15.91037 -15.46188 -15.27350 -14.95537 -14.75127 -14.56265 -14.28570 -14.21714 -14.02496 -13.84899 -13.33353 -13.22161 -13.06187 -13.02202 -12.76070 -12.45736 -12.29346 -12.06443 -11.97562 -11.94017 -11.82383 -11.79232 -11.57014 -10.87834 -10.57848 -10.31366 -9.96102 -9.74837 -9.58229 -8.45945 -6.06745 0.46625 0.57343 1.27822 1.31338 1.40337 1.65999 1.81632 2.13560 2.18685 2.83881 2.99836 3.10822 3.72916 3.80651 3.86893 3.96822 4.01028 4.10467 4.20822 4.25953 4.32611 4.42321 4.51158 4.62554 4.68547 4.70426 4.81429 4.82686 4.96562 5.01524 5.12306 5.16937 5.21395 5.32207 5.41028 5.45533 5.51127 5.61319 5.67357 5.72728 5.89034 6.17735 6.48876 6.60155 6.79415 7.25522 7.32989 7.79409 8.70673 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.003291 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.642982 B = 8506.697808 C = 8689.760076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.121 4.121 4 C 0.149 3.851 5 H 0.097 0.903 6 N -0.703 5.703 7 C 0.517 3.483 8 O -0.559 6.559 9 C -0.098 4.098 10 C -0.076 4.076 11 C -0.125 4.125 12 C -0.131 4.131 13 C -0.130 4.130 14 C -0.129 4.129 15 C -0.118 4.118 16 C 0.454 3.546 17 O -0.606 6.606 18 N -0.582 5.582 19 C -0.327 4.327 20 H 0.065 0.935 21 C -0.007 4.007 22 N -0.926 5.926 23 Si 0.952 3.048 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.235 1.235 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.412 0.588 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.387 0.613 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 24.094 6.313 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 C -0.179 4.179 4 C 0.039 3.961 5 H 0.115 0.885 6 N -0.356 5.356 7 C 0.305 3.695 8 O -0.438 6.438 9 C -0.137 4.137 10 C -0.077 4.077 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.136 4.136 16 C 0.241 3.759 17 O -0.491 6.491 18 N -0.222 5.222 19 C -0.456 4.456 20 H 0.083 0.917 21 C -0.206 4.206 22 N -0.566 5.566 23 Si 0.773 3.227 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.158 1.158 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.249 0.751 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.223 0.777 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.463 23.921 6.341 24.790 hybrid contribution 0.360 -0.944 -0.487 1.121 sum 1.823 22.977 5.854 23.781 Atomic orbital electron populations 1.21727 0.94040 1.01068 1.02697 1.21501 0.97373 0.97592 0.95530 1.21715 1.00885 0.93676 1.01584 1.20628 0.99335 0.88315 0.87800 0.88536 1.45739 1.31094 1.30028 1.28777 1.20945 0.83897 0.79482 0.85221 1.90700 1.26103 1.63286 1.63691 1.20716 1.00822 0.96448 0.95722 1.19449 0.96763 0.94152 0.97294 1.21231 0.95404 0.99416 0.98269 1.21388 0.99896 0.92982 1.00639 1.21458 0.97906 0.97880 0.97565 1.21418 0.95758 0.99423 0.98055 1.21230 1.00578 0.92369 0.99429 1.20514 0.84638 0.88083 0.82637 1.90519 1.31159 1.79487 1.47977 1.42002 1.34119 1.06721 1.39360 1.19018 1.19636 0.81928 1.24977 0.91726 1.25989 1.00712 0.94979 0.98964 1.69772 1.42549 1.03581 1.40729 0.85537 0.78560 0.80115 0.78532 1.18291 1.19583 1.15842 0.91762 0.90912 0.94852 0.90259 0.92970 0.91602 0.92990 0.75074 0.85464 0.86415 0.86005 0.84629 0.84155 0.84185 0.85150 0.77730 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 8.80 71.98 0.63 -3.18 16 2 C -0.10 -2.85 2.73 -10.79 -0.03 -2.88 16 3 C -0.12 -3.07 7.68 71.98 0.55 -2.51 16 4 C 0.15 4.95 2.36 44.24 0.10 5.05 16 5 H 0.10 3.26 7.58 -2.39 -0.02 3.25 16 6 N -0.70 -20.19 4.02 -446.09 -1.79 -21.98 16 7 C 0.52 13.64 6.44 87.65 0.56 14.20 16 8 O -0.56 -17.95 13.07 -3.03 -0.04 -17.99 16 9 C -0.10 -1.85 5.83 29.10 0.17 -1.68 16 10 C -0.08 -1.61 4.37 -19.86 -0.09 -1.70 16 11 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 12 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 13 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 14 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 15 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16 16 C 0.45 19.86 6.07 87.66 0.53 20.39 16 17 O -0.61 -30.71 15.31 -3.06 -0.05 -30.76 16 18 N -0.58 -27.25 5.09 -306.99 -1.56 -28.81 16 19 C -0.33 -18.63 10.16 84.04 0.85 -17.78 16 20 H 0.06 4.33 7.40 -2.91 -0.02 4.31 16 21 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 22 N -0.93 -54.71 13.96 21.66 0.30 -54.41 16 23 Si 0.95 38.79 27.74 68.60 1.90 40.70 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.23 -8.26 6.52 99.48 0.65 -7.61 16 27 H 0.06 1.61 7.48 -2.39 -0.02 1.60 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.03 1.12 7.23 -2.39 -0.02 1.11 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 1.44 7.51 -2.39 -0.02 1.43 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.33 6.17 -2.39 -0.01 1.32 16 34 H 0.41 11.61 7.73 -92.71 -0.72 10.90 16 35 H 0.13 1.75 8.09 -2.38 -0.02 1.73 16 36 H 0.12 1.89 8.08 -2.38 -0.02 1.87 16 37 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.39 15.68 5.77 -92.71 -0.53 15.14 16 43 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -72.42 355.44 3.35 -69.08 By element: Atomic # 1 Polarization: 45.26 SS G_CDS: -0.28 Total: 44.98 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 4.86 Total: -0.81 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.05 Total: -105.19 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -0.09 Total: -48.75 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.70 kcal Total: -72.42 3.35 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299710530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.567 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds