Wall clock time and date at job start Tue Mar 31 2020 09:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46834 * 2 1 4 4 H 1.09001 * 109.58927 * 54.23188 * 3 2 1 5 5 C 1.53192 * 109.58588 * 293.95125 * 3 2 1 6 6 C 1.53045 * 109.31140 * 185.57623 * 5 3 2 7 7 C 1.53043 * 109.53803 * 61.36673 * 6 5 3 8 8 C 1.53188 * 109.31199 * 298.63400 * 7 6 5 9 9 N 1.46925 * 109.58829 * 174.66042 * 3 2 1 10 10 S 1.65600 * 120.62869 * 353.37314 * 9 3 2 11 11 O 1.42099 * 106.40533 * 23.79817 * 10 9 3 12 12 O 1.42109 * 106.40099 * 156.71274 * 10 9 3 13 13 N 1.65598 * 107.21854 * 270.25430 * 10 9 3 14 14 C 1.46505 * 119.99731 * 278.69754 * 13 10 9 15 15 C 1.53005 * 109.46914 * 93.85589 * 14 13 10 16 16 C 1.46496 * 119.99753 * 98.70311 * 13 10 9 17 17 C 1.50700 * 109.47425 * 93.03275 * 16 13 10 18 18 H 1.07998 * 119.99616 * 359.97438 * 17 16 13 19 19 C 1.37876 * 120.00296 * 180.02562 * 17 16 13 20 20 N 1.31519 * 119.99684 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00170 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47120 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46760 * 119.99769 * 21 19 17 24 24 H 1.48500 * 109.47105 * 239.99768 * 21 19 17 25 25 H 1.08993 * 109.47853 * 305.81096 * 1 2 3 26 26 H 1.09005 * 109.47169 * 65.81545 * 1 2 3 27 27 H 1.09007 * 109.46668 * 185.80782 * 1 2 3 28 28 H 1.08998 * 109.47621 * 239.99549 * 2 1 3 29 29 H 1.09008 * 109.47116 * 119.99561 * 2 1 3 30 30 H 1.09002 * 109.49856 * 65.62877 * 5 3 2 31 31 H 1.08999 * 109.49824 * 305.52469 * 5 3 2 32 32 H 1.08994 * 109.46481 * 301.34349 * 6 5 3 33 33 H 1.09005 * 109.45602 * 181.38495 * 6 5 3 34 34 H 1.09001 * 109.49384 * 58.58101 * 7 6 5 35 35 H 1.09000 * 109.49686 * 178.68072 * 7 6 5 36 36 H 1.08996 * 109.58586 * 174.42281 * 8 7 6 37 37 H 1.09004 * 109.58504 * 294.84879 * 8 7 6 38 38 H 1.09002 * 109.46614 * 213.84921 * 14 13 10 39 39 H 1.08992 * 109.47321 * 333.85199 * 14 13 10 40 40 H 1.08994 * 109.47299 * 185.07102 * 15 14 13 41 41 H 1.08998 * 109.46684 * 305.06963 * 15 14 13 42 42 H 1.08998 * 109.47249 * 65.06606 * 15 14 13 43 43 H 1.09004 * 109.46583 * 213.02439 * 16 13 10 44 44 H 1.08998 * 109.47375 * 333.02510 * 16 13 10 45 45 H 0.96997 * 119.99705 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5958 1.9871 0.8332 5 6 1.6586 2.1219 -1.3190 6 6 2.2894 3.5154 -1.3714 7 6 3.8137 3.3896 -1.3158 8 6 4.2193 2.7245 0.0032 9 7 3.5035 1.4476 0.1288 10 16 4.3305 0.0408 0.4107 11 8 3.5039 -1.0128 -0.0644 12 8 5.6573 0.2560 -0.0507 13 7 4.4313 -0.1480 2.0528 14 6 5.4597 0.5691 2.8107 15 6 4.8807 1.8830 3.3392 16 6 3.4921 -1.0320 2.7474 17 6 4.0949 -2.4076 2.8712 18 1 5.0790 -2.6038 2.4719 19 6 3.3897 -3.4160 3.4932 20 7 2.1910 -3.1771 3.9789 21 14 4.1366 -5.1213 3.6460 22 1 5.4844 -5.1290 3.0227 23 1 4.2523 -5.4841 5.0813 24 1 3.2666 -6.1065 2.9549 25 1 -0.3634 0.6012 0.8333 26 1 -0.3634 0.4210 -0.9375 27 1 -0.3633 -1.0225 0.1040 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.5741 2.2110 -1.3822 31 1 2.0246 1.5254 -2.1546 32 1 1.9424 4.1033 -0.5218 33 1 1.9995 4.0106 -2.2981 34 1 4.1592 2.7810 -2.1514 35 1 4.2629 4.3809 -1.3767 36 1 5.2940 2.5427 0.0054 37 1 3.9550 3.3751 0.8369 38 1 5.7886 -0.0460 3.6484 39 1 6.3084 0.7814 2.1607 40 1 5.6688 2.4578 3.8255 41 1 4.4701 2.4587 2.5097 42 1 4.0906 1.6685 4.0588 43 1 3.2866 -0.6346 3.7414 44 1 2.5629 -1.0921 2.1808 45 1 1.6950 -3.8864 4.4168 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336897677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:27 Heat of formation + Delta-G solvation = -72.949160 kcal Electronic energy + Delta-G solvation = -25901.402277 eV Core-core repulsion = 22466.874903 eV Total energy + Delta-G solvation = -3434.527374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.81436 -36.91348 -36.03043 -35.15486 -33.53537 -32.69095 -32.24547 -29.96983 -29.19665 -26.57201 -24.31149 -23.95724 -23.10090 -21.69220 -21.10965 -20.40601 -18.20576 -17.07674 -16.66154 -16.27758 -15.77959 -15.14579 -14.60737 -14.47965 -14.30520 -14.18167 -13.75838 -13.48449 -13.30258 -13.08522 -12.86025 -12.56639 -12.36230 -12.09804 -11.96717 -11.70468 -11.58233 -11.40701 -11.35197 -11.06322 -11.01153 -10.97760 -10.87764 -10.75611 -10.50641 -10.41817 -10.37708 -10.04058 -9.83428 -9.69101 -9.42226 -8.71698 -8.41041 -8.01784 -6.05399 -4.08929 1.26059 3.31334 3.39126 3.44345 3.51623 4.14251 4.45773 4.72964 4.79358 4.86303 5.01513 5.20081 5.23310 5.29325 5.35875 5.45058 5.49965 5.62930 5.66760 5.71519 5.74506 5.77483 5.83669 5.88858 5.97884 5.99659 6.04820 6.07744 6.11184 6.28247 6.35564 6.46083 6.49946 6.59342 6.60325 6.69528 6.94094 6.98304 7.35559 7.53079 7.68198 7.92899 8.22719 8.93865 9.56132 11.02910 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018463 B = 0.005978 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.185722 B = 4682.583135 C = 5343.994041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.159 3.841 4 H 0.069 0.931 5 C -0.127 4.127 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.119 3.881 9 N -1.007 6.007 10 S 2.774 3.226 11 O -0.958 6.958 12 O -1.001 7.001 13 N -0.992 5.992 14 C 0.118 3.882 15 C -0.174 4.174 16 C 0.253 3.747 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.282 1.282 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.047 0.953 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 14.746 -6.720 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.053 3.947 4 H 0.087 0.913 5 C -0.166 4.166 6 C -0.154 4.154 7 C -0.170 4.170 8 C -0.007 4.007 9 N -0.846 5.846 10 S 2.785 3.215 11 O -0.942 6.942 12 O -0.985 6.985 13 N -0.833 5.833 14 C -0.009 4.009 15 C -0.233 4.233 16 C 0.131 3.869 17 C -0.568 4.568 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.208 1.208 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.427 14.053 -7.268 15.826 hybrid contribution 0.133 -0.665 0.540 0.867 sum -0.294 13.387 -6.727 14.986 Atomic orbital electron populations 1.21778 0.95974 1.02040 1.00594 1.22784 0.95818 0.93510 1.07566 1.21064 0.78692 0.97814 0.97123 0.91336 1.21970 1.00489 0.96104 0.98086 1.21479 0.95262 0.97096 1.01555 1.21864 0.96448 1.00544 0.98180 1.21366 0.96794 0.85185 0.97325 1.58462 1.15522 1.23349 1.87263 1.02258 0.72588 0.73042 0.73608 1.93742 1.66662 1.54437 1.79317 1.93486 1.37865 1.86457 1.80707 1.57781 1.43036 1.56658 1.25791 1.21109 0.89887 0.92399 0.97475 1.22328 1.01561 0.97841 1.01573 1.19184 0.87310 0.87389 0.92977 1.21543 1.03055 0.94877 1.37316 0.92269 1.24908 0.94800 0.98919 0.95252 1.69928 1.11470 1.33317 1.38624 0.86495 0.79497 0.84208 0.77583 1.19677 1.20989 1.20810 0.93190 0.93420 0.92180 0.88303 0.88487 0.90930 0.91571 0.91983 0.92156 0.91573 0.91210 0.89375 0.91789 0.89805 0.91077 0.92359 0.92950 0.92038 0.94843 0.93526 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.55 37.16 0.35 -1.75 16 2 C -0.16 -2.73 3.68 -26.73 -0.10 -2.83 16 3 C 0.16 2.29 2.97 -67.60 -0.20 2.09 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.13 -1.50 5.01 -26.61 -0.13 -1.63 16 6 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16 7 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 8 C 0.12 1.50 5.49 -3.71 -0.02 1.48 16 9 N -1.01 -15.68 3.35 -106.47 -0.36 -16.04 16 10 S 2.77 55.95 5.73 -107.50 -0.62 55.34 16 11 O -0.96 -22.03 11.76 -57.17 -0.67 -22.71 16 12 O -1.00 -21.59 15.49 -57.17 -0.89 -22.47 16 13 N -0.99 -20.58 2.82 -115.66 -0.33 -20.90 16 14 C 0.12 2.06 6.40 -4.04 -0.03 2.04 16 15 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 16 C 0.25 6.24 5.09 -5.20 -0.03 6.22 16 17 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 18 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.57 7.03 -51.93 -0.36 0.21 16 27 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 28 H 0.10 1.84 6.43 -51.93 -0.33 1.51 16 29 H 0.10 2.01 3.51 -51.92 -0.18 1.83 16 30 H 0.07 0.75 7.03 -51.93 -0.37 0.38 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.16 6.91 -51.93 -0.36 0.81 16 37 H 0.06 0.70 7.01 -51.93 -0.36 0.33 16 38 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 39 H 0.07 1.18 7.07 -51.93 -0.37 0.82 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.68 5.83 -51.93 -0.30 0.38 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 44 H 0.05 1.21 4.84 -51.93 -0.25 0.96 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 347.93 15.07 5.24 5.24 Total: -1.00 -31.61 347.93 -9.91 -41.52 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.50 Total: 0.96 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -0.51 Total: -12.69 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.05 Total: -62.00 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.56 Total: -45.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 55.95 SS G_CDS: -0.62 Total: 55.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.61 -9.91 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336897677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.432 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds