Wall clock time and date at job start Tue Mar 31 2020 09:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46834 * 2 1 4 4 H 1.09001 * 109.58927 * 54.23188 * 3 2 1 5 5 C 1.53192 * 109.58588 * 293.95125 * 3 2 1 6 6 C 1.53045 * 109.31140 * 185.57623 * 5 3 2 7 7 C 1.53043 * 109.53803 * 61.36673 * 6 5 3 8 8 C 1.53188 * 109.31199 * 298.63400 * 7 6 5 9 9 N 1.46925 * 109.58829 * 174.66042 * 3 2 1 10 10 S 1.65600 * 120.62869 * 353.37314 * 9 3 2 11 11 O 1.42099 * 106.40533 * 23.79817 * 10 9 3 12 12 O 1.42109 * 106.40099 * 156.71274 * 10 9 3 13 13 N 1.65598 * 107.21854 * 270.25430 * 10 9 3 14 14 C 1.46505 * 119.99731 * 278.69754 * 13 10 9 15 15 C 1.53005 * 109.46914 * 93.85589 * 14 13 10 16 16 C 1.46496 * 119.99753 * 98.70311 * 13 10 9 17 17 C 1.50700 * 109.47425 * 93.03275 * 16 13 10 18 18 H 1.07998 * 119.99616 * 359.97438 * 17 16 13 19 19 C 1.37876 * 120.00296 * 180.02562 * 17 16 13 20 20 N 1.31519 * 119.99684 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00170 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47120 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46760 * 119.99769 * 21 19 17 24 24 H 1.48500 * 109.47105 * 239.99768 * 21 19 17 25 25 H 1.08993 * 109.47853 * 305.81096 * 1 2 3 26 26 H 1.09005 * 109.47169 * 65.81545 * 1 2 3 27 27 H 1.09007 * 109.46668 * 185.80782 * 1 2 3 28 28 H 1.08998 * 109.47621 * 239.99549 * 2 1 3 29 29 H 1.09008 * 109.47116 * 119.99561 * 2 1 3 30 30 H 1.09002 * 109.49856 * 65.62877 * 5 3 2 31 31 H 1.08999 * 109.49824 * 305.52469 * 5 3 2 32 32 H 1.08994 * 109.46481 * 301.34349 * 6 5 3 33 33 H 1.09005 * 109.45602 * 181.38495 * 6 5 3 34 34 H 1.09001 * 109.49384 * 58.58101 * 7 6 5 35 35 H 1.09000 * 109.49686 * 178.68072 * 7 6 5 36 36 H 1.08996 * 109.58586 * 174.42281 * 8 7 6 37 37 H 1.09004 * 109.58504 * 294.84879 * 8 7 6 38 38 H 1.09002 * 109.46614 * 213.84921 * 14 13 10 39 39 H 1.08992 * 109.47321 * 333.85199 * 14 13 10 40 40 H 1.08994 * 109.47299 * 185.07102 * 15 14 13 41 41 H 1.08998 * 109.46684 * 305.06963 * 15 14 13 42 42 H 1.08998 * 109.47249 * 65.06606 * 15 14 13 43 43 H 1.09004 * 109.46583 * 213.02439 * 16 13 10 44 44 H 1.08998 * 109.47375 * 333.02510 * 16 13 10 45 45 H 0.96997 * 119.99705 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5958 1.9871 0.8332 5 6 1.6586 2.1219 -1.3190 6 6 2.2894 3.5154 -1.3714 7 6 3.8137 3.3896 -1.3158 8 6 4.2193 2.7245 0.0032 9 7 3.5035 1.4476 0.1288 10 16 4.3305 0.0408 0.4107 11 8 3.5039 -1.0128 -0.0644 12 8 5.6573 0.2560 -0.0507 13 7 4.4313 -0.1480 2.0528 14 6 5.4597 0.5691 2.8107 15 6 4.8807 1.8830 3.3392 16 6 3.4921 -1.0320 2.7474 17 6 4.0949 -2.4076 2.8712 18 1 5.0790 -2.6038 2.4719 19 6 3.3897 -3.4160 3.4932 20 7 2.1910 -3.1771 3.9789 21 14 4.1366 -5.1213 3.6460 22 1 5.4844 -5.1290 3.0227 23 1 4.2523 -5.4841 5.0813 24 1 3.2666 -6.1065 2.9549 25 1 -0.3634 0.6012 0.8333 26 1 -0.3634 0.4210 -0.9375 27 1 -0.3633 -1.0225 0.1040 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.5741 2.2110 -1.3822 31 1 2.0246 1.5254 -2.1546 32 1 1.9424 4.1033 -0.5218 33 1 1.9995 4.0106 -2.2981 34 1 4.1592 2.7810 -2.1514 35 1 4.2629 4.3809 -1.3767 36 1 5.2940 2.5427 0.0054 37 1 3.9550 3.3751 0.8369 38 1 5.7886 -0.0460 3.6484 39 1 6.3084 0.7814 2.1607 40 1 5.6688 2.4578 3.8255 41 1 4.4701 2.4587 2.5097 42 1 4.0906 1.6685 4.0588 43 1 3.2866 -0.6346 3.7414 44 1 2.5629 -1.0921 2.1808 45 1 1.6950 -3.8864 4.4168 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336897677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:26 Heat of formation + Delta-G solvation = -93.538432 kcal Electronic energy + Delta-G solvation = -25902.295095 eV Core-core repulsion = 22466.874903 eV Total energy + Delta-G solvation = -3435.420192 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.92283 -38.51862 -37.67115 -36.83033 -34.74338 -34.69479 -33.33159 -31.52930 -30.25948 -28.47544 -25.46926 -25.03273 -24.82580 -23.26454 -22.32801 -21.39626 -19.73310 -18.69945 -18.43457 -17.94232 -17.31123 -16.66329 -16.11855 -15.79131 -15.60860 -15.22051 -15.18054 -14.71050 -14.68254 -14.45034 -14.25822 -13.87505 -13.75768 -13.61696 -13.46850 -13.30464 -13.04896 -12.94901 -12.77476 -12.71982 -12.53995 -12.27387 -12.20720 -12.03095 -11.95292 -11.78856 -11.68592 -11.52437 -11.38806 -11.24724 -10.81194 -10.53324 -9.90800 -9.73150 -8.20479 -6.31664 -0.29636 1.35712 1.38318 1.49673 2.07008 2.38589 2.63063 3.09876 3.43144 3.58610 3.86244 3.97643 4.04939 4.17157 4.26112 4.38960 4.41186 4.44019 4.45435 4.53864 4.64219 4.73390 4.77069 4.84481 4.93004 4.95014 4.99816 5.07608 5.12730 5.16387 5.21208 5.25087 5.32469 5.37019 5.40509 5.44166 5.51670 5.55624 5.65122 5.76036 5.84717 6.04726 6.13820 6.76656 7.36563 8.86740 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018463 B = 0.005978 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.185722 B = 4682.583135 C = 5343.994041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.161 4.161 3 C 0.159 3.841 4 H 0.085 0.915 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.130 4.130 8 C 0.108 3.892 9 N -0.999 5.999 10 S 2.780 3.220 11 O -0.995 6.995 12 O -1.021 7.021 13 N -0.999 5.999 14 C 0.108 3.892 15 C -0.164 4.164 16 C 0.270 3.730 17 C -0.549 4.549 18 H 0.045 0.955 19 C 0.016 3.984 20 N -0.920 5.920 21 Si 0.952 3.048 22 H -0.273 1.273 23 H -0.269 1.269 24 H -0.278 1.278 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.022 0.978 44 H 0.033 0.967 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 17.189 -7.089 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C 0.054 3.946 4 H 0.103 0.897 5 C -0.164 4.164 6 C -0.149 4.149 7 C -0.169 4.169 8 C -0.016 4.016 9 N -0.841 5.841 10 S 2.792 3.208 11 O -0.978 6.978 12 O -1.004 7.004 13 N -0.839 5.839 14 C -0.017 4.017 15 C -0.222 4.222 16 C 0.147 3.853 17 C -0.589 4.589 18 H 0.063 0.937 19 C -0.184 4.184 20 N -0.560 5.560 21 Si 0.777 3.223 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.204 1.204 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.040 0.960 44 H 0.051 0.949 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.756 16.506 -7.628 18.199 hybrid contribution 0.258 -1.378 0.613 1.531 sum -0.498 15.128 -7.014 16.682 Atomic orbital electron populations 1.21737 0.93850 1.01559 1.02705 1.22631 0.97777 0.95046 1.04476 1.21201 0.77603 0.96219 0.99617 0.89682 1.21983 1.01972 0.96915 0.95532 1.21487 0.94266 0.95843 1.03330 1.21900 0.97405 1.01497 0.96120 1.21724 0.96162 0.83912 0.99799 1.58121 1.16099 1.23080 1.86752 1.01832 0.72114 0.73572 0.73265 1.93716 1.67269 1.56933 1.79928 1.93448 1.39155 1.86942 1.80896 1.57706 1.43183 1.56967 1.26037 1.21346 0.89710 0.93674 0.97006 1.22238 1.02082 0.96146 1.01783 1.18721 0.87444 0.86768 0.92357 1.21849 1.02710 0.96874 1.37425 0.93656 1.25666 0.95267 1.02454 0.94964 1.70007 1.12358 1.34519 1.39079 0.85606 0.78554 0.79897 0.78254 1.19778 1.19391 1.20396 0.91887 0.90501 0.93920 0.90590 0.92458 0.88812 0.92841 0.90468 0.90094 0.92984 0.88244 0.90219 0.89194 0.91113 0.90354 0.89255 0.91668 0.93133 0.95983 0.94931 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.55 71.98 0.69 -3.30 16 2 C -0.16 -5.64 3.68 30.59 0.11 -5.53 16 3 C 0.16 4.37 2.97 44.97 0.13 4.50 16 4 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 5 C -0.12 -2.60 5.01 30.67 0.15 -2.44 16 6 C -0.11 -1.76 5.88 30.62 0.18 -1.58 16 7 C -0.13 -2.34 6.08 30.67 0.19 -2.15 16 8 C 0.11 2.47 5.49 86.36 0.47 2.95 16 9 N -1.00 -30.28 3.35 -490.78 -1.64 -31.92 16 10 S 2.78 115.25 5.73 -56.49 -0.32 114.92 16 11 O -0.99 -48.25 11.76 -128.00 -1.51 -49.75 16 12 O -1.02 -44.83 15.49 -128.00 -1.98 -46.81 16 13 N -1.00 -42.70 2.82 -519.84 -1.47 -44.17 16 14 C 0.11 3.81 6.40 86.38 0.55 4.36 16 15 C -0.16 -4.35 10.24 71.98 0.74 -3.61 16 16 C 0.27 13.92 5.09 85.63 0.44 14.36 16 17 C -0.55 -31.79 9.39 25.60 0.24 -31.55 16 18 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 19 C 0.02 0.93 5.46 84.65 0.46 1.39 16 20 N -0.92 -54.21 13.29 21.45 0.28 -53.93 16 21 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 22 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.70 7.03 -2.38 -0.02 1.68 16 27 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.08 2.98 6.43 -2.39 -0.02 2.96 16 29 H 0.06 2.50 3.51 -2.38 -0.01 2.49 16 30 H 0.09 1.57 7.03 -2.39 -0.02 1.55 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.97 6.91 -2.39 -0.02 1.95 16 37 H 0.09 1.61 7.01 -2.38 -0.02 1.59 16 38 H 0.07 2.62 8.10 -2.39 -0.02 2.60 16 39 H 0.08 2.61 7.07 -2.39 -0.02 2.59 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.54 5.83 -2.39 -0.01 1.53 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.02 1.17 8.10 -2.38 -0.02 1.15 16 44 H 0.03 1.80 4.84 -2.39 -0.01 1.79 16 45 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -71.23 347.93 0.71 -70.52 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.96 Total: 16.24 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 4.36 Total: -22.59 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -2.83 Total: -130.02 kcal Atomic # 8 Polarization: -93.07 SS G_CDS: -3.49 Total: -96.56 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 115.25 SS G_CDS: -0.32 Total: 114.92 kcal Total: -71.23 0.71 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336897677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.016 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds