Wall clock time and date at job start Tue Mar 31 2020 09:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46897 * 2 1 4 4 H 1.08996 * 109.49670 * 55.06916 * 3 2 1 5 5 C 1.53039 * 109.49658 * 294.99903 * 3 2 1 6 6 C 1.53044 * 109.53457 * 178.68533 * 5 3 2 7 7 C 1.53190 * 109.31535 * 61.36522 * 6 5 3 8 8 N 1.46931 * 108.77368 * 305.36579 * 7 6 5 9 9 S 1.65599 * 120.62739 * 233.58016 * 8 7 6 10 10 O 1.42098 * 106.40515 * 336.46255 * 9 8 7 11 11 O 1.42105 * 106.39992 * 203.54080 * 9 8 7 12 12 N 1.65601 * 107.21643 * 90.00333 * 9 8 7 13 13 C 1.46495 * 120.00054 * 269.99671 * 12 9 8 14 14 C 1.46499 * 120.00006 * 89.99734 * 12 9 8 15 15 H 1.09004 * 109.47473 * 359.97438 * 14 12 9 16 16 C 1.53003 * 109.47442 * 120.00011 * 14 12 9 17 17 C 1.50699 * 109.47336 * 239.99985 * 14 12 9 18 18 H 1.07999 * 119.99765 * 335.17839 * 17 14 12 19 19 C 1.37885 * 120.00317 * 155.17458 * 17 14 12 20 20 N 1.31515 * 119.99872 * 5.88534 * 19 17 14 21 21 Si 1.86797 * 119.99942 * 185.88343 * 19 17 14 22 22 H 1.48498 * 109.46697 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47453 * 300.00219 * 21 19 17 24 24 H 1.48506 * 109.47149 * 60.00433 * 21 19 17 25 25 C 1.46922 * 118.74015 * 53.86101 * 8 7 6 26 26 H 1.09001 * 109.46997 * 299.99708 * 1 2 3 27 27 H 1.09000 * 109.47342 * 60.00018 * 1 2 3 28 28 H 1.09004 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46626 * 240.00050 * 2 1 3 30 30 H 1.09003 * 109.46823 * 120.00514 * 2 1 3 31 31 H 1.08998 * 109.46230 * 58.66913 * 5 3 2 32 32 H 1.08996 * 109.45151 * 298.69417 * 5 3 2 33 33 H 1.09001 * 109.50072 * 301.41367 * 6 5 3 34 34 H 1.08997 * 109.52340 * 181.33214 * 6 5 3 35 35 H 1.08993 * 109.59371 * 185.57886 * 7 6 5 36 36 H 1.08999 * 109.70080 * 65.21828 * 7 6 5 37 37 H 1.08998 * 109.47093 * 269.99850 * 13 12 9 38 38 H 1.09003 * 109.47124 * 30.00460 * 13 12 9 39 39 H 1.08999 * 109.47315 * 149.99965 * 13 12 9 40 40 H 1.09002 * 109.46619 * 295.92413 * 16 14 12 41 41 H 1.09000 * 109.47039 * 55.92027 * 16 14 12 42 42 H 1.08991 * 109.47102 * 175.92424 * 16 14 12 43 43 H 0.97003 * 119.99522 * 355.10477 * 20 19 17 44 44 H 1.09003 * 109.58909 * 65.92549 * 25 8 7 45 45 H 1.08996 * 109.58906 * 186.35521 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6354 2.1273 -1.3075 6 6 2.1167 3.5800 -1.2945 7 6 3.6446 3.6067 -1.1874 8 7 4.0498 2.8263 -0.0103 9 16 5.0325 3.4908 1.1451 10 8 5.7470 4.5412 0.5085 11 8 5.6699 2.4044 1.8029 12 7 4.0510 4.2077 2.2700 13 6 3.6561 5.6093 2.1106 14 6 3.5778 3.4401 3.4246 15 1 3.9717 2.4250 3.3724 16 6 4.0595 4.1087 4.7138 17 6 2.0715 3.3950 3.4147 18 1 1.5114 4.1705 2.9136 19 6 1.4085 2.3635 4.0453 20 7 2.0828 1.4835 4.7527 21 14 -0.4476 2.2161 3.8948 22 1 -0.9136 1.0318 4.6600 23 1 -1.0872 3.4403 4.4402 24 1 -0.8174 2.0593 2.4652 25 6 3.5717 1.4431 0.1190 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5504 2.1051 -1.4084 32 1 2.0892 1.6020 -2.1478 33 1 1.6830 4.0994 -0.4400 34 1 1.8079 4.0742 -2.2156 35 1 3.9854 4.6362 -1.0782 36 1 4.0835 3.1697 -2.0843 37 1 4.3852 6.2508 2.6054 38 1 3.6149 5.8568 1.0498 39 1 2.6740 5.7632 2.5578 40 1 5.1483 4.0766 4.7548 41 1 3.7257 5.1462 4.7315 42 1 3.6477 3.5798 5.5732 43 1 3.0521 1.5178 4.7731 44 1 4.0028 0.8317 -0.6738 45 1 3.8642 1.0446 1.0905 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337761505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:15 Heat of formation + Delta-G solvation = -98.742717 kcal Electronic energy + Delta-G solvation = -26171.145874 eV Core-core repulsion = 22735.500007 eV Total energy + Delta-G solvation = -3435.645866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.55623 -36.79975 -36.31218 -35.27908 -34.19872 -32.72403 -31.60092 -29.19789 -29.07074 -25.64813 -24.80593 -24.58195 -23.37318 -21.41058 -20.90157 -19.61098 -18.37601 -17.35674 -16.98426 -16.78269 -15.60112 -14.80123 -14.55066 -14.39791 -13.92323 -13.80412 -13.70257 -13.54949 -13.34413 -12.97043 -12.90243 -12.68393 -11.99381 -11.81930 -11.80990 -11.69589 -11.45361 -11.42316 -11.35557 -11.24507 -11.15280 -10.92156 -10.87309 -10.73132 -10.58539 -10.37697 -10.23092 -10.15746 -10.08004 -9.90903 -9.05116 -8.59034 -8.50889 -7.85134 -6.46199 -4.19606 1.20105 3.32793 3.34264 3.43178 3.53931 4.08634 4.41746 4.81330 4.87426 5.06932 5.13926 5.24451 5.27116 5.36709 5.50678 5.55322 5.63492 5.66508 5.79369 5.85264 5.94086 6.00475 6.06017 6.09058 6.10797 6.18430 6.23953 6.35306 6.38236 6.41489 6.44170 6.54792 6.56073 6.61630 6.69747 6.80373 6.87229 6.94817 7.15326 7.33598 7.62646 8.04261 8.35809 8.72626 9.50532 10.90678 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.009780 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.273578 B = 2862.411078 C = 4346.053134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.107 4.107 4 H 0.098 0.902 5 C -0.108 4.108 6 C -0.134 4.134 7 C 0.126 3.874 8 N -1.004 6.004 9 S 2.778 3.222 10 O -0.999 6.999 11 O -0.983 6.983 12 N -0.987 5.987 13 C 0.108 3.892 14 C 0.252 3.748 15 H 0.057 0.943 16 C -0.143 4.143 17 C -0.596 4.596 18 H 0.056 0.944 19 C 0.028 3.972 20 N -0.902 5.902 21 Si 1.058 2.942 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.282 1.282 25 C 0.135 3.865 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.020 0.980 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.273 0.727 44 H 0.059 0.941 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 1.740 -11.206 11.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.126 4.126 4 H 0.116 0.884 5 C -0.145 4.145 6 C -0.173 4.173 7 C 0.000 4.000 8 N -0.842 5.842 9 S 2.789 3.211 10 O -0.983 6.983 11 O -0.967 6.967 12 N -0.828 5.828 13 C -0.038 4.038 14 C 0.149 3.851 15 H 0.075 0.925 16 C -0.203 4.203 17 C -0.636 4.636 18 H 0.074 0.926 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.886 3.114 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.010 3.990 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.135 0.832 -10.683 10.926 hybrid contribution 0.792 0.992 -0.491 1.361 sum -1.344 1.824 -11.174 11.401 Atomic orbital electron populations 1.21836 0.96024 1.01088 1.02143 1.21462 0.95975 0.96225 1.01709 1.21684 0.95221 0.96416 0.99313 0.88422 1.21519 1.00508 0.95126 0.97353 1.21907 0.95594 0.97680 1.02131 1.21287 0.95148 0.95531 0.87992 1.58176 1.68313 1.21883 1.35816 1.01996 0.73873 0.72815 0.72450 1.93520 1.70842 1.57277 1.76659 1.93561 1.73503 1.55033 1.74597 1.57857 1.67891 1.19410 1.37670 1.21158 1.01304 0.81599 0.99779 1.18818 0.95309 0.90433 0.80568 0.92532 1.22134 0.97294 1.00631 1.00244 1.22077 0.90481 1.11805 1.39269 0.92553 1.25682 1.06603 0.92773 0.92792 1.70792 1.09782 1.37633 1.35592 0.83724 0.74742 0.76362 0.76538 1.20773 1.21611 1.20842 1.21429 0.94125 0.81072 1.02399 0.92074 0.92985 0.93251 0.92641 0.91465 0.91871 0.92578 0.90926 0.91582 0.90033 0.91909 0.94115 0.93226 0.90410 0.96066 0.93857 0.92216 0.91562 0.92247 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.12 -1.65 5.41 -26.73 -0.14 -1.80 16 3 C -0.11 -1.67 2.35 -90.27 -0.21 -1.88 16 4 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 5 C -0.11 -1.39 4.95 -26.69 -0.13 -1.53 16 6 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 7 C 0.13 1.78 6.38 -3.71 -0.02 1.75 16 8 N -1.00 -17.21 3.34 -113.27 -0.38 -17.59 16 9 S 2.78 56.40 6.06 -107.50 -0.65 55.75 16 10 O -1.00 -20.95 15.93 -57.17 -0.91 -21.86 16 11 O -0.98 -22.87 15.41 -57.17 -0.88 -23.75 16 12 N -0.99 -20.37 3.12 -115.86 -0.36 -20.73 16 13 C 0.11 1.92 9.23 59.84 0.55 2.47 16 14 C 0.25 5.92 2.25 -69.08 -0.16 5.77 16 15 H 0.06 1.48 5.73 -51.93 -0.30 1.18 16 16 C -0.14 -3.21 9.13 37.16 0.34 -2.87 16 17 C -0.60 -14.67 8.13 -34.44 -0.28 -14.95 16 18 H 0.06 1.37 6.66 -52.49 -0.35 1.02 16 19 C 0.03 0.71 5.45 -17.82 -0.10 0.62 16 20 N -0.90 -24.98 13.60 55.43 0.75 -24.23 16 21 Si 1.06 23.03 29.91 -169.99 -5.08 17.95 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -5.68 6.55 56.52 0.37 -5.31 16 25 C 0.14 2.26 5.69 -3.49 -0.02 2.24 16 26 H 0.06 0.96 7.59 -51.93 -0.39 0.57 16 27 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.78 6.51 -51.93 -0.34 0.44 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.14 7.13 -51.93 -0.37 0.77 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 39 H 0.08 1.39 6.63 -51.93 -0.34 1.04 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.04 0.90 7.54 -51.93 -0.39 0.51 16 42 H 0.06 1.41 7.77 -51.93 -0.40 1.01 16 43 H 0.27 7.65 6.36 -40.82 -0.26 7.39 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.70 7.12 -51.93 -0.37 1.33 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -29.40 355.76 -9.87 -39.27 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.74 Total: 3.63 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 0.02 Total: -13.80 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.01 Total: -62.54 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -1.79 Total: -45.61 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.08 Total: 17.95 kcal Atomic # 16 Polarization: 56.40 SS G_CDS: -0.65 Total: 55.75 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.40 -9.87 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337761505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.473 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds