Wall clock time and date at job start Tue Mar 31 2020 09:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46955 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46918 * 184.60867 * 4 3 2 6 6 C 1.46493 * 119.99990 * 85.84901 * 5 4 3 7 7 C 1.53011 * 117.49961 * 2.39028 * 6 5 4 8 8 C 1.53003 * 117.49857 * 293.76911 * 6 5 4 9 9 S 1.65595 * 119.99579 * 265.84862 * 5 4 3 10 10 O 1.42090 * 106.40864 * 23.54294 * 9 5 4 11 11 O 1.42100 * 106.39988 * 156.46318 * 9 5 4 12 12 N 1.65601 * 107.21685 * 269.99833 * 9 5 4 13 13 C 1.46504 * 120.00161 * 270.00122 * 12 9 5 14 14 C 1.46507 * 119.99947 * 90.00767 * 12 9 5 15 15 H 1.08997 * 109.46604 * 359.97438 * 14 12 9 16 16 C 1.52998 * 109.46801 * 239.99914 * 14 12 9 17 17 C 1.50698 * 109.47220 * 119.99559 * 14 12 9 18 18 H 1.08000 * 119.99818 * 0.02562 * 17 14 12 19 19 C 1.37872 * 119.99921 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99876 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00102 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.47044 * 89.99837 * 21 19 17 23 23 H 1.48496 * 109.47312 * 209.99697 * 21 19 17 24 24 H 1.48494 * 109.47081 * 329.99833 * 21 19 17 25 25 H 1.08995 * 109.47111 * 59.99660 * 1 2 3 26 26 H 1.09002 * 109.46773 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46950 * 299.99480 * 1 2 3 28 28 H 1.09003 * 109.46701 * 240.00585 * 2 1 3 29 29 H 1.08995 * 109.47111 * 120.00340 * 2 1 3 30 30 H 1.09003 * 109.46938 * 60.00730 * 3 2 1 31 31 H 1.08995 * 109.47489 * 300.00109 * 3 2 1 32 32 H 1.08994 * 109.46642 * 64.60979 * 4 3 2 33 33 H 1.08996 * 109.47154 * 304.60915 * 4 3 2 34 34 H 1.08993 * 115.55122 * 148.09394 * 6 5 4 35 35 H 1.08997 * 117.49399 * 359.97438 * 7 6 5 36 36 H 1.08997 * 117.49661 * 145.01682 * 7 6 5 37 37 H 1.09002 * 117.49478 * 214.97890 * 8 6 5 38 38 H 1.08993 * 117.49875 * 359.97438 * 8 6 5 39 39 H 1.09001 * 109.46904 * 90.00356 * 13 12 9 40 40 H 1.08998 * 109.46887 * 210.00330 * 13 12 9 41 41 H 1.08998 * 109.47422 * 330.00275 * 13 12 9 42 42 H 1.09000 * 109.46933 * 299.99354 * 16 14 12 43 43 H 1.09001 * 109.47162 * 60.00078 * 16 14 12 44 44 H 1.09002 * 109.47023 * 179.97438 * 16 14 12 45 45 H 0.97006 * 119.99968 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8193 0.1116 6 6 4.2153 3.4367 1.4308 7 6 3.9063 2.5738 2.6560 8 6 2.9464 3.6927 2.2465 9 16 4.4327 3.6776 -1.2542 10 8 3.6937 3.0871 -2.3145 11 8 4.3293 5.0513 -0.9057 12 7 6.0309 3.3983 -1.5858 13 6 7.0606 4.2720 -1.0175 14 6 6.4153 2.2777 -2.4477 15 1 5.5210 1.7459 -2.7725 16 6 7.3215 1.3225 -1.6685 17 6 7.1544 2.8009 -3.6523 18 1 7.3215 3.8620 -3.7644 19 6 7.6172 1.9250 -4.6112 20 7 7.4132 0.6329 -4.4748 21 14 8.5339 2.5734 -6.1040 22 1 9.9880 2.6272 -5.8071 23 1 8.2978 1.6718 -7.2601 24 1 8.0449 3.9367 -6.4316 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 1.0017 -0.9275 33 1 3.9330 0.8590 0.8467 34 1 5.0240 4.1624 1.5170 35 1 3.5858 1.5469 2.4804 36 1 4.5119 2.7317 3.5484 37 1 2.9205 4.5867 2.8696 38 1 1.9949 3.4022 1.8015 39 1 7.3800 3.8772 -0.0530 40 1 7.9145 4.3146 -1.6935 41 1 6.6532 5.2740 -0.8831 42 1 8.2158 1.8542 -1.3435 43 1 6.7868 0.9441 -0.7972 44 1 7.6071 0.4885 -2.3096 45 1 7.7385 0.0167 -5.1497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337860983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:49 Heat of formation + Delta-G solvation = -56.138635 kcal Electronic energy + Delta-G solvation = -25099.245647 eV Core-core repulsion = 21665.447233 eV Total energy + Delta-G solvation = -3433.798415 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.49920 -36.75770 -36.12991 -35.23214 -35.07782 -32.69968 -32.56836 -29.10039 -28.55713 -25.49415 -25.17294 -23.82801 -22.50433 -21.37576 -20.88429 -20.59814 -18.54019 -17.57106 -16.86298 -16.29231 -16.11786 -15.19162 -14.93888 -14.83144 -14.32641 -14.03696 -13.46378 -13.41404 -13.13147 -12.90651 -12.69348 -12.25452 -12.10030 -11.92174 -11.88185 -11.74241 -11.60310 -11.44343 -11.33701 -11.21401 -10.97668 -10.91798 -10.90920 -10.81488 -10.79707 -10.48692 -10.32282 -10.24367 -10.22304 -10.03125 -9.27521 -8.62826 -8.45108 -7.95217 -6.07814 -4.14190 1.16774 3.28107 3.35196 3.38144 3.41575 3.77465 4.13201 4.39943 4.63336 4.84583 4.91772 4.92687 5.01733 5.08863 5.15043 5.23245 5.24135 5.44723 5.52292 5.67036 5.71394 5.75581 5.79241 5.82309 5.91346 6.00713 6.09480 6.11655 6.17108 6.25410 6.34206 6.43713 6.46014 6.65561 6.74086 6.84675 6.88086 7.03954 7.47774 7.62971 7.78936 8.04635 8.27452 8.87686 9.51481 10.97896 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.005166 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.915158 B = 5418.346018 C = 6179.905459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.146 4.146 4 C 0.122 3.878 5 N -0.982 5.982 6 C 0.094 3.906 7 C -0.182 4.182 8 C -0.197 4.197 9 S 2.778 3.222 10 O -0.969 6.969 11 O -0.992 6.992 12 N -0.989 5.989 13 C 0.096 3.904 14 C 0.268 3.732 15 H 0.057 0.943 16 C -0.146 4.146 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.010 0.990 44 H 0.092 0.908 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 0.176 13.900 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.185 4.185 4 C -0.004 4.004 5 N -0.816 5.816 6 C -0.014 4.014 7 C -0.221 4.221 8 C -0.236 4.236 9 S 2.788 3.212 10 O -0.953 6.953 11 O -0.976 6.976 12 N -0.831 5.831 13 C -0.050 4.050 14 C 0.165 3.835 15 H 0.075 0.925 16 C -0.206 4.206 17 C -0.560 4.560 18 H 0.081 0.919 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.029 0.971 44 H 0.110 0.890 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.763 0.553 13.267 15.381 hybrid contribution 0.837 -0.019 -0.554 1.004 sum -6.925 0.534 12.712 14.486 Atomic orbital electron populations 1.21756 0.95954 1.01365 1.01749 1.21456 0.95827 0.96529 1.02261 1.22237 0.95937 0.97353 1.02970 1.21324 0.93747 0.81954 1.03357 1.57924 1.79679 1.24482 1.19559 1.21269 0.99197 0.99743 0.81157 1.23245 1.03640 0.97164 0.98027 1.23495 0.95784 1.00205 1.04158 1.02082 0.73669 0.72901 0.72506 1.93599 1.70588 1.78623 1.52441 1.93515 1.86912 1.32686 1.84519 1.57747 1.22816 1.41576 1.60995 1.21298 0.93478 0.92509 0.97731 1.18727 0.96028 0.81832 0.86920 0.92488 1.22104 0.98840 1.01745 0.97869 1.21331 1.36094 0.93802 1.04762 0.91948 1.24897 0.95985 0.94837 0.98098 1.69858 1.46288 1.01575 1.35149 0.86502 0.79819 0.78948 0.82191 1.20646 1.21105 1.19821 0.92606 0.92885 0.93038 0.91407 0.92122 0.91491 0.90989 0.89487 0.90485 0.85528 0.88056 0.88282 0.88389 0.88281 0.94506 0.89843 0.92009 0.94873 0.97113 0.88998 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.12 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C -0.15 -1.89 5.45 -26.73 -0.15 -2.03 16 4 C 0.12 1.74 4.75 -4.04 -0.02 1.72 16 5 N -0.98 -15.41 3.17 -107.30 -0.34 -15.75 16 6 C 0.09 1.23 6.02 -67.93 -0.41 0.82 16 7 C -0.18 -1.84 9.73 -26.72 -0.26 -2.10 16 8 C -0.20 -2.17 9.99 -26.73 -0.27 -2.44 16 9 S 2.78 55.89 6.06 -107.50 -0.65 55.24 16 10 O -0.97 -22.64 15.67 -57.18 -0.90 -23.54 16 11 O -0.99 -21.00 15.98 -57.18 -0.91 -21.91 16 12 N -0.99 -20.75 3.12 -115.85 -0.36 -21.11 16 13 C 0.10 1.73 9.66 59.85 0.58 2.31 16 14 C 0.27 6.53 2.62 -69.08 -0.18 6.35 16 15 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 16 C -0.15 -3.29 8.97 37.16 0.33 -2.96 16 17 C -0.52 -13.98 7.99 -34.44 -0.28 -14.26 16 18 H 0.06 1.67 7.33 -52.49 -0.38 1.29 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.78 5.44 -51.93 -0.28 0.50 16 31 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 32 H 0.09 1.42 7.64 -51.93 -0.40 1.03 16 33 H 0.08 0.93 6.25 -51.93 -0.32 0.60 16 34 H 0.13 1.59 8.12 -51.93 -0.42 1.17 16 35 H 0.10 0.99 6.21 -51.93 -0.32 0.67 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.11 5.90 -51.93 -0.31 0.81 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.57 7.02 -51.93 -0.36 1.20 16 41 H 0.06 1.05 7.02 -51.93 -0.36 0.68 16 42 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 43 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 45 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -30.94 363.82 -10.21 -41.14 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.60 Total: 1.94 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.53 Total: -13.58 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.07 Total: -60.84 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.81 Total: -45.45 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 55.89 SS G_CDS: -0.65 Total: 55.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.94 -10.21 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337860983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.994 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds