Wall clock time and date at job start Tue Mar 31 2020 09:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 C 1.52995 * 109.47514 * 239.99836 * 2 1 3 5 5 N 1.46505 * 109.46858 * 119.99820 * 2 1 3 6 6 C 1.34767 * 120.00209 * 60.00176 * 5 2 1 7 7 O 1.21291 * 120.00172 * 359.97438 * 6 5 2 8 8 C 1.50703 * 120.00415 * 179.97438 * 6 5 2 9 9 N 1.46492 * 109.47433 * 179.97438 * 8 6 5 10 10 C 1.34777 * 120.00403 * 180.02562 * 9 8 6 11 11 O 1.21592 * 119.99740 * 0.02562 * 10 9 8 12 12 C 1.47639 * 120.00339 * 180.02562 * 10 9 8 13 13 C 1.40007 * 119.89573 * 0.24611 * 12 10 9 14 14 C 1.36318 * 120.10468 * 180.25591 * 13 12 10 15 15 C 1.40884 * 119.89177 * 359.47662 * 14 13 12 16 16 C 1.41116 * 120.10368 * 180.29746 * 15 14 13 17 17 H 1.07997 * 120.00134 * 154.53831 * 16 15 14 18 18 C 1.40227 * 119.99714 * 334.53632 * 16 15 14 19 19 N 1.30644 * 120.00033 * 343.04996 * 18 16 15 20 20 Si 1.86799 * 119.99848 * 163.05218 * 18 16 15 21 21 H 1.48501 * 109.47314 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47265 * 119.99809 * 20 18 16 23 23 H 1.48498 * 109.47305 * 239.99792 * 20 18 16 24 24 C 1.40889 * 119.79628 * 0.27580 * 15 14 13 25 25 C 1.36316 * 119.88883 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47512 * 300.00029 * 1 2 3 27 27 H 1.08999 * 109.46974 * 60.00403 * 1 2 3 28 28 H 1.08998 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47283 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46960 * 299.99606 * 3 2 1 31 31 H 1.09006 * 109.47546 * 59.99883 * 3 2 1 32 32 H 1.09007 * 109.46922 * 299.99909 * 4 2 1 33 33 H 1.08999 * 109.47195 * 59.99897 * 4 2 1 34 34 H 1.08995 * 109.47047 * 180.02562 * 4 2 1 35 35 H 0.96998 * 119.99945 * 240.00267 * 5 2 1 36 36 H 1.09000 * 109.46601 * 59.99887 * 8 6 5 37 37 H 1.08994 * 109.47120 * 300.00566 * 8 6 5 38 38 H 0.97005 * 120.00342 * 359.97438 * 9 8 6 39 39 H 1.08000 * 119.95276 * 0.03420 * 13 12 10 40 40 H 1.08007 * 120.05277 * 179.74755 * 14 13 12 41 41 H 0.97005 * 119.99903 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.05358 * 180.02562 * 24 15 14 43 43 H 1.08002 * 119.94674 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9808 1.4096 7 8 0.9951 -2.5703 0.6114 8 6 2.1955 -2.6915 2.6398 9 7 1.7066 -4.0724 2.6402 10 6 2.0319 -4.9022 3.6511 11 8 2.7309 -4.5045 4.5631 12 6 1.5397 -6.2942 3.6512 13 6 0.7392 -6.7513 2.5974 14 6 0.2781 -8.0341 2.5958 15 6 0.6173 -8.9035 3.6512 16 6 0.1475 -10.2342 3.6509 17 1 0.6942 -11.0000 4.1811 18 6 -1.0291 -10.5621 2.9621 19 7 -1.8618 -9.6205 2.6063 20 14 -1.4057 -12.3455 2.5533 21 1 -0.3118 -13.2116 3.0616 22 1 -2.6871 -12.7397 3.1918 23 1 -1.5175 -12.5029 1.0809 24 6 1.4273 -8.4404 4.7068 25 6 1.8795 -7.1545 4.7023 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6768 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2488 35 1 2.5759 -0.2192 1.8348 36 1 1.8325 -2.1776 3.5299 37 1 3.2854 -2.6915 2.6394 38 1 1.1480 -4.3894 1.9132 39 1 0.4837 -6.0856 1.7863 40 1 -0.3427 -8.3847 1.7845 41 1 -2.6755 -9.8473 2.1295 42 1 1.6903 -9.1035 5.5178 43 1 2.5002 -6.7984 5.5113 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340039186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:45 Heat of formation + Delta-G solvation = -68.787733 kcal Electronic energy + Delta-G solvation = -24010.899810 eV Core-core repulsion = 20441.108938 eV Total energy + Delta-G solvation = -3569.790872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.42682 -38.93637 -37.16744 -36.66818 -33.92010 -33.83743 -32.37312 -30.30763 -29.41449 -27.73494 -27.60860 -27.46560 -25.49779 -22.15467 -21.24408 -20.79985 -19.89977 -19.57349 -17.77873 -17.47798 -16.29508 -16.15564 -15.73471 -15.48288 -15.12756 -14.57489 -14.18492 -13.97665 -13.93177 -13.79021 -13.26399 -13.11312 -12.75229 -12.67729 -12.64527 -12.37755 -12.22542 -12.04337 -11.87837 -11.80506 -11.39575 -11.35626 -11.29098 -11.25078 -10.92540 -10.62142 -10.01598 -9.76708 -9.52890 -9.33229 -9.32703 -9.02622 -8.67404 -7.68419 -7.51021 -6.99922 -4.57726 2.24206 2.47219 2.80665 2.92608 2.97489 3.02920 3.07365 3.76508 3.87225 3.88799 4.37161 4.58680 4.61978 4.68378 4.77883 5.20798 5.32380 5.37991 5.41159 5.47599 5.50820 5.55074 5.61069 5.71195 5.71840 6.02696 6.11189 6.13806 6.15427 6.34280 6.35917 6.79613 6.83957 6.85956 7.06488 7.16367 7.31377 7.47148 7.68098 7.82531 7.89555 8.03417 8.10126 8.25073 8.43573 8.66064 8.78322 9.04296 9.92112 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.002738 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.806938 B =10224.616079 C =11244.192208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 C -0.155 4.155 4 C -0.165 4.165 5 N -0.724 5.724 6 C 0.512 3.488 7 O -0.527 6.527 8 C 0.105 3.895 9 N -0.731 5.731 10 C 0.575 3.425 11 O -0.578 6.578 12 C -0.283 4.283 13 C -0.061 4.061 14 C -0.177 4.177 15 C 0.129 3.871 16 C -0.442 4.442 17 H 0.085 0.915 18 C 0.073 3.927 19 N -0.771 5.771 20 Si 0.913 3.087 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.239 4.239 25 C -0.021 4.021 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.409 0.591 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 16.491 -6.624 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.083 3.917 3 C -0.212 4.212 4 C -0.223 4.223 5 N -0.377 5.377 6 C 0.299 3.701 7 O -0.404 6.404 8 C -0.024 4.024 9 N -0.388 5.388 10 C 0.370 3.630 11 O -0.461 6.461 12 C -0.288 4.288 13 C -0.080 4.080 14 C -0.196 4.196 15 C 0.126 3.874 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.148 4.148 19 N -0.395 5.395 20 Si 0.737 3.263 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.258 4.258 25 C -0.041 4.041 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.248 0.752 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.513 16.401 -6.698 18.061 hybrid contribution -0.315 -0.470 -0.258 0.622 sum 3.198 15.932 -6.956 17.676 Atomic orbital electron populations 1.22238 0.94099 1.04306 1.01678 1.20353 0.94554 0.91690 0.85114 1.22088 1.01601 0.94483 1.03055 1.22236 1.00919 1.02979 0.96165 1.46089 1.54223 1.11929 1.25475 1.20710 0.79995 0.81930 0.87504 1.90655 1.37304 1.65892 1.46502 1.20898 1.00530 0.85130 0.95794 1.45684 1.55737 1.09851 1.27513 1.18592 0.78588 0.85806 0.80011 1.90628 1.40552 1.78005 1.36891 1.18830 1.14579 0.92722 1.02657 1.20536 0.95773 0.96022 0.95693 1.20983 1.04881 0.93564 1.00216 1.17809 0.87855 0.92783 0.88995 1.19876 1.06004 0.94802 1.26306 0.89678 1.26106 0.95404 1.00176 0.93106 1.69751 1.08004 1.35220 1.26487 0.86167 0.79320 0.81631 0.79194 1.18084 1.19690 1.19402 1.20719 1.09133 0.95602 1.00392 1.20352 0.95372 0.93011 0.95333 0.92704 0.91913 0.90101 0.91905 0.90834 0.91899 0.90118 0.91912 0.92715 0.76440 0.89078 0.89075 0.75186 0.89055 0.86174 0.90276 0.88347 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 8.40 37.16 0.31 -1.25 16 2 C 0.17 1.42 1.06 -131.82 -0.14 1.28 16 3 C -0.15 -0.87 8.59 37.16 0.32 -0.55 16 4 C -0.16 -1.54 8.40 37.16 0.31 -1.23 16 5 N -0.72 -6.43 5.10 -47.61 -0.24 -6.67 16 6 C 0.51 6.39 7.32 -10.99 -0.08 6.31 16 7 O -0.53 -8.21 11.88 5.55 0.07 -8.14 16 8 C 0.10 1.42 6.15 -5.20 -0.03 1.39 16 9 N -0.73 -13.02 5.48 -62.50 -0.34 -13.36 16 10 C 0.57 12.43 7.76 -12.42 -0.10 12.34 16 11 O -0.58 -13.55 16.32 5.29 0.09 -13.46 16 12 C -0.28 -6.64 5.89 -104.73 -0.62 -7.26 16 13 C -0.06 -1.42 9.47 -39.61 -0.38 -1.79 16 14 C -0.18 -4.47 8.63 -39.27 -0.34 -4.81 16 15 C 0.13 3.34 5.57 -106.80 -0.59 2.74 16 16 C -0.44 -11.14 9.05 -37.74 -0.34 -11.48 16 17 H 0.09 2.05 7.90 -52.49 -0.41 1.63 16 18 C 0.07 1.73 5.15 -17.31 -0.09 1.65 16 19 N -0.77 -18.86 10.95 55.56 0.61 -18.25 16 20 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 25 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.00 6.17 -51.93 -0.32 0.68 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.99 6.17 -51.92 -0.32 0.67 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 2.46 8.47 -40.82 -0.35 2.12 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.41 7.32 5.44 -40.82 -0.22 7.10 16 39 H 0.09 1.89 6.37 -52.49 -0.33 1.56 16 40 H 0.12 3.08 6.18 -52.48 -0.32 2.75 16 41 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 42 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -30.04 355.30 -8.07 -38.10 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.04 Total: 13.71 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.52 Total: -9.79 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.02 Total: -38.28 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.15 Total: -21.60 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.04 -8.07 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340039186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.685 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds