Wall clock time and date at job start Tue Mar 31 2020 09:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 C 1.52995 * 109.47514 * 239.99836 * 2 1 3 5 5 N 1.46505 * 109.46858 * 119.99820 * 2 1 3 6 6 C 1.34767 * 120.00209 * 60.00176 * 5 2 1 7 7 O 1.21291 * 120.00172 * 359.97438 * 6 5 2 8 8 C 1.50703 * 120.00415 * 179.97438 * 6 5 2 9 9 N 1.46492 * 109.47433 * 179.97438 * 8 6 5 10 10 C 1.34777 * 120.00403 * 180.02562 * 9 8 6 11 11 O 1.21592 * 119.99740 * 0.02562 * 10 9 8 12 12 C 1.47639 * 120.00339 * 180.02562 * 10 9 8 13 13 C 1.40007 * 119.89573 * 0.24611 * 12 10 9 14 14 C 1.36318 * 120.10468 * 180.25591 * 13 12 10 15 15 C 1.40884 * 119.89177 * 359.47662 * 14 13 12 16 16 C 1.41116 * 120.10368 * 180.29746 * 15 14 13 17 17 H 1.07997 * 120.00134 * 154.53831 * 16 15 14 18 18 C 1.40227 * 119.99714 * 334.53632 * 16 15 14 19 19 N 1.30644 * 120.00033 * 343.04996 * 18 16 15 20 20 Si 1.86799 * 119.99848 * 163.05218 * 18 16 15 21 21 H 1.48501 * 109.47314 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47265 * 119.99809 * 20 18 16 23 23 H 1.48498 * 109.47305 * 239.99792 * 20 18 16 24 24 C 1.40889 * 119.79628 * 0.27580 * 15 14 13 25 25 C 1.36316 * 119.88883 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47512 * 300.00029 * 1 2 3 27 27 H 1.08999 * 109.46974 * 60.00403 * 1 2 3 28 28 H 1.08998 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47283 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46960 * 299.99606 * 3 2 1 31 31 H 1.09006 * 109.47546 * 59.99883 * 3 2 1 32 32 H 1.09007 * 109.46922 * 299.99909 * 4 2 1 33 33 H 1.08999 * 109.47195 * 59.99897 * 4 2 1 34 34 H 1.08995 * 109.47047 * 180.02562 * 4 2 1 35 35 H 0.96998 * 119.99945 * 240.00267 * 5 2 1 36 36 H 1.09000 * 109.46601 * 59.99887 * 8 6 5 37 37 H 1.08994 * 109.47120 * 300.00566 * 8 6 5 38 38 H 0.97005 * 120.00342 * 359.97438 * 9 8 6 39 39 H 1.08000 * 119.95276 * 0.03420 * 13 12 10 40 40 H 1.08007 * 120.05277 * 179.74755 * 14 13 12 41 41 H 0.97005 * 119.99903 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.05358 * 180.02562 * 24 15 14 43 43 H 1.08002 * 119.94674 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.6927 -1.9808 1.4096 7 8 0.9951 -2.5703 0.6114 8 6 2.1955 -2.6915 2.6398 9 7 1.7066 -4.0724 2.6402 10 6 2.0319 -4.9022 3.6511 11 8 2.7309 -4.5045 4.5631 12 6 1.5397 -6.2942 3.6512 13 6 0.7392 -6.7513 2.5974 14 6 0.2781 -8.0341 2.5958 15 6 0.6173 -8.9035 3.6512 16 6 0.1475 -10.2342 3.6509 17 1 0.6942 -11.0000 4.1811 18 6 -1.0291 -10.5621 2.9621 19 7 -1.8618 -9.6205 2.6063 20 14 -1.4057 -12.3455 2.5533 21 1 -0.3118 -13.2116 3.0616 22 1 -2.6871 -12.7397 3.1918 23 1 -1.5175 -12.5029 1.0809 24 6 1.4273 -8.4404 4.7068 25 6 1.8795 -7.1545 4.7023 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6768 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2488 35 1 2.5759 -0.2192 1.8348 36 1 1.8325 -2.1776 3.5299 37 1 3.2854 -2.6915 2.6394 38 1 1.1480 -4.3894 1.9132 39 1 0.4837 -6.0856 1.7863 40 1 -0.3427 -8.3847 1.7845 41 1 -2.6755 -9.8473 2.1295 42 1 1.6903 -9.1035 5.5178 43 1 2.5002 -6.7984 5.5113 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340039186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:44 Heat of formation + Delta-G solvation = -88.000904 kcal Electronic energy + Delta-G solvation = -24011.732955 eV Core-core repulsion = 20441.108938 eV Total energy + Delta-G solvation = -3570.624018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.46856 -40.53339 -38.90943 -37.63712 -35.67184 -35.37758 -33.29681 -32.08512 -31.30965 -29.04275 -28.24290 -28.20774 -27.20101 -23.78088 -22.84955 -22.17010 -21.31830 -20.59725 -19.38170 -19.11750 -17.55016 -17.34787 -17.07002 -16.84759 -16.46875 -15.75154 -15.60242 -15.59016 -15.05088 -15.02819 -14.60467 -14.51417 -14.27112 -13.88739 -13.81804 -13.61532 -13.33040 -13.21392 -13.01783 -12.96163 -12.85842 -12.62759 -12.50918 -12.37665 -12.11660 -11.99685 -11.76095 -11.38412 -11.14202 -10.82951 -10.72504 -10.24111 -10.08993 -9.58550 -9.41398 -8.79222 -6.49162 0.41720 1.14447 1.38094 1.41761 1.48641 1.55558 1.84509 2.09870 2.17379 2.54383 2.77552 3.57146 3.68041 3.92629 3.98571 4.13266 4.19175 4.30146 4.34360 4.43693 4.46065 4.70113 4.72286 4.76322 4.86515 4.92435 4.95219 5.00301 5.02571 5.14779 5.22992 5.28532 5.33747 5.39489 5.42195 5.57356 5.58763 5.80858 5.92966 5.99276 6.21553 6.50098 6.53566 6.61843 6.76454 6.87818 7.15776 7.36141 8.16183 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.002738 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.806938 B =10224.616079 C =11244.192208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.164 3.836 3 C -0.147 4.147 4 C -0.163 4.163 5 N -0.705 5.705 6 C 0.515 3.485 7 O -0.562 6.562 8 C 0.100 3.900 9 N -0.722 5.722 10 C 0.577 3.423 11 O -0.598 6.598 12 C -0.294 4.294 13 C -0.056 4.056 14 C -0.198 4.198 15 C 0.102 3.898 16 C -0.471 4.471 17 H 0.088 0.912 18 C 0.035 3.965 19 N -0.800 5.800 20 Si 0.990 3.010 21 H -0.255 1.255 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.251 4.251 25 C -0.029 4.029 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.417 0.583 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.409 0.591 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.296 0.704 42 H 0.108 0.892 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 17.895 -7.244 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 C -0.205 4.205 4 C -0.221 4.221 5 N -0.359 5.359 6 C 0.301 3.699 7 O -0.441 6.441 8 C -0.026 4.026 9 N -0.377 5.377 10 C 0.371 3.629 11 O -0.482 6.482 12 C -0.298 4.298 13 C -0.075 4.075 14 C -0.217 4.217 15 C 0.098 3.902 16 C -0.498 4.498 17 H 0.106 0.894 18 C -0.184 4.184 19 N -0.424 5.424 20 Si 0.809 3.191 21 H -0.178 1.178 22 H -0.188 1.188 23 H -0.186 1.186 24 C -0.270 4.270 25 C -0.048 4.048 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.255 0.745 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.248 0.752 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.843 17.880 -7.321 19.700 hybrid contribution -0.404 -0.764 -0.086 0.869 sum 3.439 17.116 -7.408 18.964 Atomic orbital electron populations 1.22211 0.94904 1.02342 1.02714 1.20517 0.94007 0.93328 0.84253 1.22045 1.02259 0.91996 1.04167 1.22207 1.01218 1.01279 0.97424 1.45982 1.53354 1.10650 1.25891 1.20520 0.79748 0.82908 0.86722 1.90664 1.39015 1.66929 1.47467 1.21150 1.01442 0.82933 0.97113 1.45567 1.54734 1.11275 1.26096 1.18284 0.78514 0.85534 0.80593 1.90611 1.41499 1.78270 1.37801 1.19137 1.14276 0.94042 1.02382 1.20701 0.94967 0.95646 0.96161 1.20992 1.05944 0.94537 1.00266 1.18155 0.88705 0.93645 0.89647 1.20150 1.07093 0.94795 1.27792 0.89400 1.26983 0.94533 1.04688 0.92188 1.69780 1.08587 1.37482 1.26553 0.85038 0.79224 0.75707 0.79115 1.17817 1.18786 1.18631 1.20889 1.09368 0.96191 1.00592 1.20524 0.95462 0.92990 0.95845 0.92199 0.90400 0.93469 0.90826 0.89688 0.90881 0.93447 0.90410 0.92125 0.74540 0.87706 0.87542 0.75244 0.86974 0.87137 0.89254 0.87356 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.40 71.98 0.60 -2.28 16 2 C 0.16 2.43 1.06 3.60 0.00 2.43 16 3 C -0.15 -1.15 8.59 71.98 0.62 -0.53 16 4 C -0.16 -2.83 8.40 71.98 0.60 -2.23 16 5 N -0.71 -11.11 5.10 -422.92 -2.16 -13.27 16 6 C 0.51 12.30 7.32 87.66 0.64 12.94 16 7 O -0.56 -17.54 11.88 -3.06 -0.04 -17.57 16 8 C 0.10 2.58 6.15 85.64 0.53 3.11 16 9 N -0.72 -25.21 5.48 -469.91 -2.57 -27.78 16 10 C 0.58 24.70 7.76 86.73 0.67 25.37 16 11 O -0.60 -27.54 16.32 -4.00 -0.07 -27.60 16 12 C -0.29 -13.88 5.89 -19.93 -0.12 -14.00 16 13 C -0.06 -2.62 9.47 22.25 0.21 -2.41 16 14 C -0.20 -10.27 8.63 22.47 0.19 -10.08 16 15 C 0.10 5.41 5.57 -21.28 -0.12 5.29 16 16 C -0.47 -24.20 9.05 23.46 0.21 -23.99 16 17 H 0.09 4.30 7.90 -2.91 -0.02 4.28 16 18 C 0.03 1.65 5.15 85.35 0.44 2.09 16 19 N -0.80 -39.56 10.95 21.87 0.24 -39.32 16 20 Si 0.99 35.61 29.59 68.60 2.03 37.64 16 21 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 22 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 23 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 24 C -0.25 -12.58 9.73 22.47 0.22 -12.37 16 25 C -0.03 -1.41 9.52 22.25 0.21 -1.19 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.17 6.17 -2.39 -0.01 1.16 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.05 1.16 6.17 -2.38 -0.01 1.15 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.42 3.91 8.47 -92.71 -0.79 3.12 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.41 14.52 5.44 -92.70 -0.50 14.02 16 39 H 0.11 4.68 6.37 -2.91 -0.02 4.67 16 40 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 41 H 0.30 13.02 8.29 -92.70 -0.77 12.25 16 42 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 43 H 0.11 5.03 7.63 -2.91 -0.02 5.00 16 Total: -1.00 -66.04 355.30 2.11 -63.92 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.25 Total: 41.81 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.92 Total: -17.83 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -4.49 Total: -80.37 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.10 Total: -45.17 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -66.04 2.11 -63.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340039186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.077 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds