Wall clock time and date at job start Tue Mar 31 2020 08:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99965 * 2 1 4 4 C 1.50697 * 109.47246 * 275.00077 * 3 2 1 5 5 H 1.08005 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00156 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00147 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99597 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47005 * 90.00106 * 8 6 4 10 10 H 1.48504 * 109.46926 * 209.99922 * 8 6 4 11 11 H 1.48498 * 109.47363 * 329.99740 * 8 6 4 12 12 S 1.65596 * 119.99965 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40224 * 156.45858 * 12 2 1 14 14 O 1.42106 * 106.40330 * 23.53876 * 12 2 1 15 15 N 1.65595 * 107.21746 * 269.99730 * 12 2 1 16 16 C 1.47023 * 125.64919 * 269.68842 * 15 12 2 17 17 C 1.54339 * 107.26560 * 178.85045 * 16 15 12 18 18 C 1.55155 * 103.01915 * 338.14263 * 17 16 15 19 19 H 1.08997 * 111.04022 * 277.21539 * 18 17 16 20 20 C 1.53005 * 111.00426 * 153.38112 * 18 17 16 21 21 C 1.53009 * 109.46883 * 309.04194 * 20 18 17 22 22 C 1.52997 * 109.46818 * 69.03546 * 20 18 17 23 23 C 1.52999 * 109.47308 * 189.04167 * 20 18 17 24 24 C 1.47426 * 125.64895 * 90.00208 * 15 12 2 25 25 H 1.09004 * 109.46944 * 269.99947 * 1 2 3 26 26 H 1.09003 * 109.46895 * 29.99626 * 1 2 3 27 27 H 1.09003 * 109.47224 * 149.99665 * 1 2 3 28 28 H 1.08998 * 109.46784 * 35.00093 * 3 2 1 29 29 H 1.08997 * 109.46993 * 155.00206 * 3 2 1 30 30 H 0.96993 * 119.99883 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.88536 * 298.39878 * 16 15 12 32 32 H 1.09000 * 109.87732 * 59.56573 * 16 15 12 33 33 H 1.08991 * 110.84839 * 219.67688 * 17 16 15 34 34 H 1.09000 * 110.66337 * 96.52257 * 17 16 15 35 35 H 1.08999 * 109.47397 * 66.51361 * 21 20 18 36 36 H 1.08998 * 109.46697 * 186.51658 * 21 20 18 37 37 H 1.09005 * 109.46747 * 306.51289 * 21 20 18 38 38 H 1.09001 * 109.47365 * 60.00826 * 22 20 18 39 39 H 1.09005 * 109.46798 * 180.02562 * 22 20 18 40 40 H 1.08999 * 109.47232 * 299.99903 * 22 20 18 41 41 H 1.08989 * 109.47166 * 59.99763 * 23 20 18 42 42 H 1.09002 * 109.47095 * 180.02562 * 23 20 18 43 43 H 1.09002 * 109.46551 * 299.99343 * 23 20 18 44 44 H 1.09006 * 110.36441 * 322.93252 * 24 15 12 45 45 H 1.09003 * 110.37033 * 85.24775 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 2.9998 2.9510 -1.6663 7 7 3.1249 3.3849 -2.9015 8 14 3.7138 3.9402 -0.2519 9 1 5.1111 3.5054 0.0005 10 1 3.6999 5.3836 -0.6007 11 1 2.8981 3.7181 0.9690 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4113 -2.4063 -0.5455 15 7 2.5382 -1.8593 1.5809 16 6 3.7028 -1.4873 2.3976 17 6 3.4829 -2.0798 3.8056 18 6 1.9455 -2.2806 3.8642 19 1 1.4399 -1.3539 4.1354 20 6 1.5760 -3.4069 4.8318 21 6 2.3979 -4.6542 4.5002 22 6 1.8748 -2.9656 6.2659 23 6 0.0860 -3.7271 4.6965 24 6 1.6279 -2.6789 2.4013 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6502 2.0043 0.5895 29 1 3.1858 1.1177 0.4343 30 1 3.5877 4.2189 -3.0779 31 1 4.6109 -1.8992 1.9576 32 1 3.7788 -0.4019 2.4620 33 1 3.8102 -1.3815 4.5758 34 1 4.0005 -3.0338 3.9066 35 1 3.4505 -4.4614 4.7075 36 1 2.0541 -5.4887 5.1113 37 1 2.2745 -4.9008 3.4457 38 1 1.2893 -2.0770 6.5022 39 1 1.6120 -3.7681 6.9552 40 1 2.9363 -2.7376 6.3622 41 1 -0.1268 -4.0414 3.6749 42 1 -0.1773 -4.5291 5.3861 43 1 -0.4994 -2.8385 4.9328 44 1 0.5898 -2.4478 2.1620 45 1 1.8271 -3.7391 2.2449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343954457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:21 Heat of formation + Delta-G solvation = -80.215591 kcal Electronic energy + Delta-G solvation = -24899.648160 eV Core-core repulsion = 21464.805690 eV Total energy + Delta-G solvation = -3434.842470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.70031 -36.67557 -35.88315 -35.61266 -35.19242 -32.38013 -30.29236 -28.84934 -28.37370 -27.57365 -27.24491 -25.16610 -22.72884 -21.96468 -21.63311 -18.70706 -18.41861 -17.37572 -17.04395 -16.67314 -16.22560 -15.41288 -14.79462 -14.37165 -14.32149 -14.21521 -13.77995 -13.56662 -13.34892 -13.24537 -12.99587 -12.54358 -12.45230 -12.40302 -12.33515 -11.87147 -11.85524 -11.73674 -11.55858 -11.46925 -11.34575 -11.25566 -11.22494 -11.14002 -10.67045 -10.59819 -10.53836 -10.47561 -10.44027 -10.23984 -9.55348 -8.82802 -8.59189 -8.10671 -6.08236 -4.07569 1.09061 3.26494 3.31653 3.33037 3.45669 4.04192 4.26390 4.37998 4.40236 4.52129 4.77781 4.85249 5.00487 5.06707 5.21032 5.24630 5.29136 5.37273 5.41020 5.46774 5.54345 5.55812 5.60344 5.63781 5.71669 5.78024 5.85916 5.87627 5.91580 5.93257 6.01036 6.03130 6.14027 6.16503 6.30520 6.35617 6.41635 6.55757 6.73300 7.08367 7.40070 7.58004 8.49134 8.96555 9.50677 11.05422 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.004556 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.799952 B = 6144.546872 C = 6592.721346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.991 5.991 3 C 0.229 3.771 4 C -0.532 4.532 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.793 3.207 13 O -0.957 6.957 14 O -0.989 6.989 15 N -1.024 6.024 16 C 0.120 3.880 17 C -0.128 4.128 18 C -0.090 4.090 19 H 0.085 0.915 20 C -0.059 4.059 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.145 4.145 24 C 0.126 3.874 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 -12.908 19.702 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.832 5.832 3 C 0.105 3.895 4 C -0.571 4.571 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.803 3.197 13 O -0.941 6.941 14 O -0.973 6.973 15 N -0.863 5.863 16 C -0.005 4.005 17 C -0.166 4.166 18 C -0.110 4.110 19 H 0.103 0.897 20 C -0.059 4.059 21 C -0.207 4.207 22 C -0.197 4.197 23 C -0.203 4.203 24 C 0.000 4.000 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.337 -13.203 18.713 23.144 hybrid contribution 0.285 0.993 0.870 1.351 sum -3.052 -12.209 19.582 23.278 Atomic orbital electron populations 1.21371 0.79752 1.03854 1.00140 1.57477 1.14486 1.22637 1.88605 1.19417 0.90718 0.80798 0.98565 1.21384 1.36860 1.07037 0.91852 0.90445 1.24870 0.95359 0.97180 0.95547 1.69895 1.42568 1.21978 1.18868 0.86917 0.80405 0.79733 0.83054 1.19756 1.20923 1.18987 1.01660 0.73449 0.72717 0.71913 1.93628 1.40535 1.84837 1.75083 1.93528 1.67410 1.60223 1.76143 1.59428 1.30015 1.65666 1.31161 1.21661 0.88347 0.99818 0.90705 1.22817 0.95953 1.01822 0.96046 1.22446 0.96136 0.98544 0.93839 0.89667 1.20444 0.95774 0.94785 0.94941 1.22073 0.99929 0.96717 1.01991 1.21863 1.01667 1.01053 0.95126 1.21926 0.94771 1.01480 1.02088 1.22059 0.93232 0.95099 0.89604 0.94312 0.90153 0.91349 0.94987 0.95479 0.92512 0.91246 0.91698 0.90415 0.90097 0.92136 0.92742 0.91962 0.92654 0.92766 0.92488 0.92205 0.92676 0.92518 0.91133 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.68 59.85 0.64 2.28 16 2 N -0.99 -20.59 3.23 -123.05 -0.40 -20.99 16 3 C 0.23 5.45 4.15 -5.19 -0.02 5.43 16 4 C -0.53 -15.38 9.94 -34.44 -0.34 -15.73 16 5 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.89 -27.73 13.96 55.43 0.77 -26.95 16 8 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 12 S 2.79 56.76 6.31 -107.50 -0.68 56.08 16 13 O -0.96 -23.24 16.69 -57.17 -0.95 -24.20 16 14 O -0.99 -21.08 16.33 -57.17 -0.93 -22.01 16 15 N -1.02 -15.73 3.75 -111.41 -0.42 -16.14 16 16 C 0.12 1.60 6.99 -3.06 -0.02 1.58 16 17 C -0.13 -1.22 5.57 -24.89 -0.14 -1.36 16 18 C -0.09 -0.86 2.40 -88.47 -0.21 -1.07 16 19 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 20 C -0.06 -0.45 0.60 -154.50 -0.09 -0.55 16 21 C -0.15 -1.13 7.70 37.16 0.29 -0.84 16 22 C -0.14 -0.95 8.35 37.16 0.31 -0.64 16 23 C -0.15 -1.08 8.23 37.16 0.31 -0.77 16 24 C 0.13 1.52 5.20 -2.53 -0.01 1.51 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 27 H 0.07 1.13 7.02 -51.93 -0.36 0.77 16 28 H 0.03 0.73 7.17 -51.93 -0.37 0.35 16 29 H 0.03 0.65 7.04 -51.93 -0.37 0.28 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.69 5.62 -51.93 -0.29 0.40 16 35 H 0.06 0.43 6.34 -51.93 -0.33 0.10 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.51 5.98 -51.93 -0.31 0.20 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.38 7.61 -51.93 -0.40 -0.02 16 41 H 0.06 0.47 7.19 -51.94 -0.37 0.10 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 45 H 0.07 0.80 5.87 -51.93 -0.30 0.50 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -34.64 357.47 -9.05 -43.69 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.76 Total: -3.23 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.60 Total: -8.12 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.04 Total: -64.08 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.89 Total: -46.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 56.76 SS G_CDS: -0.68 Total: 56.08 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.64 -9.05 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343954457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.529 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds