Wall clock time and date at job start Tue Mar 31 2020 08:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46503 * 119.99965 * 2 1 4 4 C 1.50697 * 109.47246 * 275.00077 * 3 2 1 5 5 H 1.08005 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00156 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00147 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99597 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47005 * 90.00106 * 8 6 4 10 10 H 1.48504 * 109.46926 * 209.99922 * 8 6 4 11 11 H 1.48498 * 109.47363 * 329.99740 * 8 6 4 12 12 S 1.65596 * 119.99965 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40224 * 156.45858 * 12 2 1 14 14 O 1.42106 * 106.40330 * 23.53876 * 12 2 1 15 15 N 1.65595 * 107.21746 * 269.99730 * 12 2 1 16 16 C 1.47023 * 125.64919 * 269.68842 * 15 12 2 17 17 C 1.54339 * 107.26560 * 178.85045 * 16 15 12 18 18 C 1.55155 * 103.01915 * 338.14263 * 17 16 15 19 19 H 1.08997 * 111.04022 * 277.21539 * 18 17 16 20 20 C 1.53005 * 111.00426 * 153.38112 * 18 17 16 21 21 C 1.53009 * 109.46883 * 309.04194 * 20 18 17 22 22 C 1.52997 * 109.46818 * 69.03546 * 20 18 17 23 23 C 1.52999 * 109.47308 * 189.04167 * 20 18 17 24 24 C 1.47426 * 125.64895 * 90.00208 * 15 12 2 25 25 H 1.09004 * 109.46944 * 269.99947 * 1 2 3 26 26 H 1.09003 * 109.46895 * 29.99626 * 1 2 3 27 27 H 1.09003 * 109.47224 * 149.99665 * 1 2 3 28 28 H 1.08998 * 109.46784 * 35.00093 * 3 2 1 29 29 H 1.08997 * 109.46993 * 155.00206 * 3 2 1 30 30 H 0.96993 * 119.99883 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.88536 * 298.39878 * 16 15 12 32 32 H 1.09000 * 109.87732 * 59.56573 * 16 15 12 33 33 H 1.08991 * 110.84839 * 219.67688 * 17 16 15 34 34 H 1.09000 * 110.66337 * 96.52257 * 17 16 15 35 35 H 1.08999 * 109.47397 * 66.51361 * 21 20 18 36 36 H 1.08998 * 109.46697 * 186.51658 * 21 20 18 37 37 H 1.09005 * 109.46747 * 306.51289 * 21 20 18 38 38 H 1.09001 * 109.47365 * 60.00826 * 22 20 18 39 39 H 1.09005 * 109.46798 * 180.02562 * 22 20 18 40 40 H 1.08999 * 109.47232 * 299.99903 * 22 20 18 41 41 H 1.08989 * 109.47166 * 59.99763 * 23 20 18 42 42 H 1.09002 * 109.47095 * 180.02562 * 23 20 18 43 43 H 1.09002 * 109.46551 * 299.99343 * 23 20 18 44 44 H 1.09006 * 110.36441 * 322.93252 * 24 15 12 45 45 H 1.09003 * 110.37033 * 85.24775 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 2.9998 2.9510 -1.6663 7 7 3.1249 3.3849 -2.9015 8 14 3.7138 3.9402 -0.2519 9 1 5.1111 3.5054 0.0005 10 1 3.6999 5.3836 -0.6007 11 1 2.8981 3.7181 0.9690 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4113 -2.4063 -0.5455 15 7 2.5382 -1.8593 1.5809 16 6 3.7028 -1.4873 2.3976 17 6 3.4829 -2.0798 3.8056 18 6 1.9455 -2.2806 3.8642 19 1 1.4399 -1.3539 4.1354 20 6 1.5760 -3.4069 4.8318 21 6 2.3979 -4.6542 4.5002 22 6 1.8748 -2.9656 6.2659 23 6 0.0860 -3.7271 4.6965 24 6 1.6279 -2.6789 2.4013 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6502 2.0043 0.5895 29 1 3.1858 1.1177 0.4343 30 1 3.5877 4.2189 -3.0779 31 1 4.6109 -1.8992 1.9576 32 1 3.7788 -0.4019 2.4620 33 1 3.8102 -1.3815 4.5758 34 1 4.0005 -3.0338 3.9066 35 1 3.4505 -4.4614 4.7075 36 1 2.0541 -5.4887 5.1113 37 1 2.2745 -4.9008 3.4457 38 1 1.2893 -2.0770 6.5022 39 1 1.6120 -3.7681 6.9552 40 1 2.9363 -2.7376 6.3622 41 1 -0.1268 -4.0414 3.6749 42 1 -0.1773 -4.5291 5.3861 43 1 -0.4994 -2.8385 4.9328 44 1 0.5898 -2.4478 2.1620 45 1 1.8271 -3.7391 2.2449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343954457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:19 Heat of formation + Delta-G solvation = -105.224301 kcal Electronic energy + Delta-G solvation = -24900.732619 eV Core-core repulsion = 21464.805690 eV Total energy + Delta-G solvation = -3435.926929 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -40.50933 -38.38966 -37.32899 -36.92797 -36.72899 -34.53238 -31.23723 -30.31375 -29.69505 -28.12750 -27.84410 -26.84108 -23.98128 -23.54108 -22.59714 -20.01801 -19.29273 -19.19279 -18.63182 -18.36928 -17.41122 -16.88778 -16.22734 -15.72350 -15.34861 -15.16032 -14.89533 -14.68823 -14.56206 -14.41358 -14.20507 -14.15929 -14.00755 -13.47814 -13.38184 -13.22766 -13.16854 -13.03942 -12.94539 -12.60600 -12.46609 -12.41108 -12.40034 -12.28112 -12.12924 -11.99714 -11.86705 -11.72791 -11.26185 -11.23350 -11.13742 -10.80467 -10.01056 -9.78806 -8.30997 -6.37629 -0.48007 1.35219 1.39850 1.48252 1.98906 2.34105 2.52492 3.02471 3.17524 3.53409 3.75126 3.82549 4.00132 4.14604 4.22190 4.30636 4.44827 4.50058 4.52867 4.61739 4.66392 4.74358 4.81755 4.84423 4.88682 4.95123 4.97043 4.98668 5.04860 5.09671 5.13198 5.20878 5.21428 5.29779 5.30285 5.33630 5.41837 5.45886 5.50466 5.61278 5.67098 5.77485 6.28048 6.65018 7.25507 8.86778 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.004556 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.799952 B = 6144.546872 C = 6592.721346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.000 6.000 3 C 0.237 3.763 4 C -0.547 4.547 5 H 0.025 0.975 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.228 1.228 12 S 2.805 3.195 13 O -1.006 7.006 14 O -1.007 7.007 15 N -1.018 6.018 16 C 0.107 3.893 17 C -0.117 4.117 18 C -0.081 4.081 19 H 0.089 0.911 20 C -0.054 4.054 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.147 4.147 24 C 0.114 3.886 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.268 0.732 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -12.979 23.916 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.841 5.841 3 C 0.113 3.887 4 C -0.586 4.586 5 H 0.044 0.956 6 C -0.191 4.191 7 N -0.588 5.588 8 Si 0.767 3.233 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.151 1.151 12 S 2.815 3.185 13 O -0.990 6.990 14 O -0.991 6.991 15 N -0.860 5.860 16 C -0.018 4.018 17 C -0.156 4.156 18 C -0.101 4.101 19 H 0.108 0.892 20 C -0.055 4.055 21 C -0.209 4.209 22 C -0.195 4.195 23 C -0.204 4.204 24 C -0.010 4.010 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.527 -13.301 22.927 26.739 hybrid contribution 0.276 0.886 -0.507 1.058 sum -3.251 -12.415 22.420 25.833 Atomic orbital electron populations 1.21589 0.77848 1.03468 1.02734 1.57437 1.15864 1.21584 1.89225 1.19191 0.91759 0.82394 0.95401 1.21708 1.36632 1.06948 0.93341 0.95647 1.25971 0.95650 0.98567 0.98913 1.70074 1.43995 1.22890 1.21878 0.85757 0.79868 0.77616 0.80071 1.19271 1.20267 1.15055 1.00949 0.72251 0.72431 0.72853 1.93557 1.42810 1.85468 1.77169 1.93491 1.67586 1.60556 1.77453 1.58976 1.31443 1.65607 1.29951 1.21958 0.87251 1.00081 0.92495 1.22834 0.96121 1.02735 0.93878 1.22442 0.96063 0.99419 0.92198 0.89238 1.20421 0.95894 0.94061 0.95104 1.22089 1.00309 0.97022 1.01441 1.21841 1.02019 1.01380 0.94228 1.21942 0.94666 1.01933 1.01867 1.22400 0.92804 0.94944 0.90858 0.90088 0.91117 0.91269 0.92597 0.95003 0.92264 0.91902 0.91917 0.88209 0.88884 0.91598 0.91846 0.93088 0.92498 0.92048 0.92023 0.93015 0.91782 0.92278 0.90787 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.97 10.68 127.77 1.36 4.34 16 2 N -1.00 -41.29 3.23 -543.21 -1.75 -43.04 16 3 C 0.24 11.15 4.15 85.63 0.36 11.50 16 4 C -0.55 -32.54 9.94 25.60 0.25 -32.29 16 5 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 6 C 0.01 0.40 5.47 84.66 0.46 0.86 16 7 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 8 Si 0.95 42.92 27.47 68.60 1.88 44.80 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.23 -8.92 6.54 99.48 0.65 -8.27 16 12 S 2.80 114.95 6.31 -56.49 -0.36 114.59 16 13 O -1.01 -50.36 16.69 -128.00 -2.14 -52.50 16 14 O -1.01 -43.47 16.33 -128.00 -2.09 -45.56 16 15 N -1.02 -30.05 3.75 -506.39 -1.90 -31.95 16 16 C 0.11 2.66 6.99 86.73 0.61 3.27 16 17 C -0.12 -1.86 5.57 31.79 0.18 -1.69 16 18 C -0.08 -1.29 2.40 -9.40 -0.02 -1.32 16 19 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 20 C -0.05 -0.66 0.60 -52.18 -0.03 -0.69 16 21 C -0.15 -1.85 7.70 71.99 0.55 -1.29 16 22 C -0.14 -1.35 8.35 71.98 0.60 -0.74 16 23 C -0.15 -1.78 8.23 71.98 0.59 -1.18 16 24 C 0.11 2.54 5.20 86.85 0.45 3.00 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 27 H 0.07 2.28 7.02 -2.39 -0.02 2.26 16 28 H 0.06 2.37 7.17 -2.39 -0.02 2.36 16 29 H 0.03 1.48 7.04 -2.39 -0.02 1.46 16 30 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.28 5.62 -2.39 -0.01 1.26 16 35 H 0.07 0.73 6.34 -2.39 -0.02 0.71 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.05 0.74 5.98 -2.38 -0.01 0.72 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 40 H 0.06 0.56 7.61 -2.39 -0.02 0.54 16 41 H 0.05 0.70 7.19 -2.39 -0.02 0.69 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 1.59 8.05 -2.38 -0.02 1.57 16 45 H 0.08 1.61 5.87 -2.39 -0.01 1.59 16 Total: -1.00 -78.38 357.47 0.21 -78.17 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.90 Total: 12.20 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.36 Total: -16.24 kcal Atomic # 7 Polarization: -132.11 SS G_CDS: -3.35 Total: -135.46 kcal Atomic # 8 Polarization: -93.84 SS G_CDS: -4.23 Total: -98.06 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Atomic # 16 Polarization: 114.95 SS G_CDS: -0.36 Total: 114.59 kcal Total: -78.38 0.21 -78.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343954457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.053 kcal (2) G-P(sol) polarization free energy of solvation -78.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds