Wall clock time and date at job start Tue Mar 31 2020 08:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46726 * 2 1 4 4 C 1.52999 * 109.47393 * 120.00043 * 2 1 3 5 5 H 1.08998 * 109.46665 * 54.88754 * 4 2 1 6 6 N 1.46903 * 109.46873 * 174.88393 * 4 2 1 7 7 C 1.46894 * 111.00061 * 273.26979 * 6 4 2 8 8 C 1.52997 * 109.47240 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47399 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00125 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00150 * 180.02562 * 9 8 7 12 12 N 1.31506 * 120.00081 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99689 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.46841 * 90.00118 * 13 11 9 15 15 H 1.48498 * 109.46891 * 209.99723 * 13 11 9 16 16 H 1.48497 * 109.47475 * 329.99995 * 13 11 9 17 17 C 1.50696 * 109.46932 * 294.88651 * 4 2 1 18 18 C 1.38656 * 119.76850 * 279.72184 * 17 4 2 19 19 C 1.37760 * 120.39436 * 179.76591 * 18 17 4 20 20 C 1.39546 * 119.73193 * 0.51262 * 19 18 17 21 21 N 1.36152 * 133.70782 * 179.74708 * 20 19 18 22 22 C 1.30623 * 108.71311 * 179.97438 * 21 20 19 23 23 O 1.35190 * 124.92897 * 180.02562 * 22 21 20 24 24 O 1.34382 * 110.14059 * 359.97438 * 22 21 20 25 25 C 1.35267 * 108.18543 * 0.02562 * 24 22 21 26 26 C 1.38004 * 119.77020 * 99.99989 * 17 4 2 27 27 H 1.08992 * 109.47166 * 65.71418 * 1 2 3 28 28 H 1.09002 * 109.46570 * 185.70509 * 1 2 3 29 29 H 1.08991 * 109.47102 * 305.70726 * 1 2 3 30 30 H 1.09004 * 109.46864 * 240.00608 * 2 1 3 31 31 H 1.08993 * 109.46966 * 59.99958 * 3 2 1 32 32 H 1.09001 * 109.46873 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47066 * 300.00276 * 3 2 1 34 34 H 1.00895 * 110.99999 * 37.23080 * 6 4 2 35 35 H 1.09005 * 109.47392 * 299.96251 * 7 6 4 36 36 H 1.09006 * 109.47180 * 59.96219 * 7 6 4 37 37 H 1.08996 * 109.47081 * 300.00516 * 8 7 6 38 38 H 1.09006 * 109.46999 * 59.99932 * 8 7 6 39 39 H 0.97000 * 120.00465 * 180.02562 * 12 11 9 40 40 H 1.07995 * 119.79846 * 0.02804 * 18 17 4 41 41 H 1.07991 * 120.13512 * 180.23625 * 19 18 17 42 42 H 0.96702 * 113.99992 * 89.97634 * 23 22 21 43 43 H 1.08004 * 120.05237 * 0.02562 * 26 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6040 -1.7190 1.2961 6 7 3.5040 -0.8291 1.1889 7 6 3.9133 -2.0319 0.4519 8 6 5.4408 -2.1092 0.4098 9 6 5.8608 -3.3429 -0.3469 10 1 5.1131 -4.0054 -0.7572 11 6 7.1997 -3.6259 -0.5154 12 7 7.5662 -4.7027 -1.1752 13 14 8.4930 -2.4804 0.1950 14 1 8.8306 -2.9106 1.5757 15 1 9.7131 -2.5266 -0.6502 16 1 7.9634 -1.0934 0.2243 17 6 1.6439 0.0585 2.4764 18 6 2.3867 1.1652 2.8584 19 6 2.0332 1.8902 3.9752 20 6 0.9270 1.5009 4.7315 21 7 0.3385 1.9892 5.8580 22 6 -0.6885 1.2381 6.1535 23 8 -1.5080 1.4290 7.2117 24 8 -0.8130 0.2490 5.2525 25 6 0.1809 0.3780 4.3440 26 6 0.5477 -0.3373 3.2154 27 1 -0.3633 0.4226 -0.9367 28 1 -0.3632 -1.0226 0.1022 29 1 -0.3633 0.5997 0.8344 30 1 1.8934 -0.5138 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.9112 0.0000 0.7829 35 1 3.5186 -2.9165 0.9519 36 1 3.5236 -1.9852 -0.5651 37 1 5.8357 -1.2248 -0.0900 38 1 5.8303 -2.1561 1.4268 39 1 8.5081 -4.9021 -1.2935 40 1 3.2450 1.4631 2.2745 41 1 2.6125 2.7537 4.2667 42 1 -2.2656 2.0001 7.0245 43 1 -0.0233 -1.2033 2.9146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346828682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:30 Heat of formation + Delta-G solvation = -6.008288 kcal Electronic energy + Delta-G solvation = -24585.502258 eV Core-core repulsion = 21018.433707 eV Total energy + Delta-G solvation = -3567.068551 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.42905 -39.74302 -38.27678 -36.78004 -34.78047 -34.14094 -32.48856 -31.04009 -30.33075 -28.93673 -27.36881 -25.59313 -23.88512 -23.46938 -22.48795 -22.09459 -20.48368 -20.09758 -19.34425 -17.99554 -17.50055 -16.89199 -16.71732 -15.95012 -15.41418 -15.04307 -14.84997 -14.33232 -14.26623 -14.12359 -13.76720 -13.48793 -13.32186 -12.70201 -12.60535 -12.52820 -12.36827 -12.18753 -12.07735 -11.73872 -11.45425 -11.39269 -11.25579 -10.96614 -10.85872 -10.80249 -10.62932 -10.23611 -9.81934 -9.79619 -9.25456 -8.90827 -8.55625 -8.46758 -8.02676 -6.06137 -4.04790 0.40474 1.08687 1.65282 2.08626 3.19916 3.32009 3.39079 3.42627 3.45733 4.28905 4.36060 4.44640 4.66509 4.70991 4.76053 4.87697 4.96177 5.06361 5.08087 5.19331 5.28604 5.49376 5.51043 5.55182 5.59527 5.75048 5.77756 5.83948 5.89474 5.99454 6.07019 6.09236 6.15068 6.18431 6.30918 6.36033 6.48808 6.69993 6.72552 7.06711 7.28392 7.34028 7.51775 7.67676 7.83931 8.50546 8.97771 9.56143 11.07148 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.003083 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.971438 B = 9080.068773 C = 9639.499138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C -0.156 4.156 4 C 0.127 3.873 5 H 0.090 0.910 6 N -0.686 5.686 7 C 0.074 3.926 8 C -0.010 4.010 9 C -0.522 4.522 10 H 0.071 0.929 11 C 0.067 3.933 12 N -0.903 5.903 13 Si 0.882 3.118 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.018 4.018 18 C -0.089 4.089 19 C -0.064 4.064 20 C 0.020 3.980 21 N -0.462 5.462 22 C 0.406 3.594 23 O -0.410 6.410 24 O -0.228 6.228 25 C 0.022 3.978 26 C -0.092 4.092 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.338 0.662 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.021 0.979 39 H 0.263 0.737 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.417 0.583 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.104 15.659 8.697 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.213 4.213 4 C 0.016 3.984 5 H 0.108 0.892 6 N -0.317 5.317 7 C -0.054 4.054 8 C -0.048 4.048 9 C -0.560 4.560 10 H 0.089 0.911 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.710 3.290 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 C -0.020 4.020 18 C -0.108 4.108 19 C -0.082 4.082 20 C -0.091 4.091 21 N -0.205 5.205 22 C 0.156 3.844 23 O -0.217 6.217 24 O -0.122 6.122 25 C -0.028 4.028 26 C -0.111 4.111 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.031 0.969 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.277 0.723 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.378 15.373 9.932 25.937 hybrid contribution -0.228 0.363 -0.867 0.967 sum -18.606 15.735 9.065 25.999 Atomic orbital electron populations 1.21824 0.94914 1.01834 1.01708 1.21778 0.96550 0.97157 0.98776 1.22056 1.01199 0.95866 1.02209 1.20561 0.90198 0.97864 0.89762 0.89155 1.60723 1.05326 1.06996 1.58633 1.22010 0.98637 0.90350 0.94379 1.19542 0.90720 0.97325 0.97164 1.21051 0.92988 1.07409 1.34572 0.91113 1.25008 0.98641 0.95057 0.94711 1.69908 1.16673 1.25933 1.41722 0.86737 0.81017 0.82059 0.79202 1.20240 1.21540 1.18964 1.19691 0.92118 0.94671 0.95471 1.20978 0.99563 0.94328 0.95973 1.20293 0.93903 1.00432 0.93621 1.19546 0.99553 0.95857 0.94180 1.71002 1.08528 1.26556 1.14464 1.22395 0.91606 0.84754 0.85655 1.84919 1.40618 1.71797 1.24374 1.84456 1.46363 1.48376 1.32982 1.19898 0.90328 0.99476 0.93077 1.19650 0.98777 1.00682 0.92010 0.92746 0.92560 0.92602 0.90128 0.91779 0.92252 0.92581 0.84229 0.91588 0.95636 0.96872 0.96038 0.92707 0.84064 0.84542 0.72276 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.76 37.16 0.33 -1.00 16 2 C -0.12 -1.29 2.79 -90.61 -0.25 -1.54 16 3 C -0.16 -1.48 7.77 37.16 0.29 -1.20 16 4 C 0.13 1.53 2.09 -68.86 -0.14 1.39 16 5 H 0.09 1.12 7.62 -51.93 -0.40 0.73 16 6 N -0.69 -10.22 5.66 -107.95 -0.61 -10.83 16 7 C 0.07 1.38 5.42 -3.83 -0.02 1.36 16 8 C -0.01 -0.22 4.30 -27.89 -0.12 -0.34 16 9 C -0.52 -14.59 9.66 -34.44 -0.33 -14.93 16 10 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 11 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 12 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 13 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 17 C -0.02 -0.21 3.88 -104.56 -0.41 -0.62 16 18 C -0.09 -0.99 6.95 -39.60 -0.28 -1.26 16 19 C -0.06 -0.72 10.10 -39.27 -0.40 -1.12 16 20 C 0.02 0.27 7.23 -84.70 -0.61 -0.35 16 21 N -0.46 -6.06 11.38 -12.79 -0.15 -6.21 16 22 C 0.41 4.59 9.54 52.25 0.50 5.09 16 23 O -0.41 -3.11 13.62 -40.55 -0.55 -3.67 16 24 O -0.23 -2.82 10.78 -20.52 -0.22 -3.04 16 25 C 0.02 0.28 7.42 -38.70 -0.29 -0.01 16 26 C -0.09 -1.06 8.92 -39.55 -0.35 -1.41 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.51 7.12 -51.93 -0.37 0.14 16 30 H 0.08 0.95 7.48 -51.93 -0.39 0.56 16 31 H 0.06 0.59 5.66 -51.93 -0.29 0.29 16 32 H 0.06 0.57 6.25 -51.93 -0.32 0.25 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.34 4.68 5.95 -39.29 -0.23 4.45 16 35 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 36 H 0.03 0.47 7.48 -51.93 -0.39 0.08 16 37 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 38 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.14 1.42 6.41 -52.49 -0.34 1.09 16 41 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.42 0.52 9.06 45.56 0.41 0.94 16 43 H 0.13 1.34 8.03 -52.48 -0.42 0.92 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -33.46 346.57 -7.59 -41.05 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.20 Total: 1.52 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.18 Total: -14.09 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.02 Total: -43.95 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.77 Total: -6.70 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.46 -7.59 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346828682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.044 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds