Wall clock time and date at job start Tue Mar 31 2020 08:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46726 * 2 1 4 4 C 1.52999 * 109.47393 * 120.00043 * 2 1 3 5 5 H 1.08998 * 109.46665 * 54.88754 * 4 2 1 6 6 N 1.46903 * 109.46873 * 174.88393 * 4 2 1 7 7 C 1.46894 * 111.00061 * 273.26979 * 6 4 2 8 8 C 1.52997 * 109.47240 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47399 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00125 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00150 * 180.02562 * 9 8 7 12 12 N 1.31506 * 120.00081 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 119.99689 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.46841 * 90.00118 * 13 11 9 15 15 H 1.48498 * 109.46891 * 209.99723 * 13 11 9 16 16 H 1.48497 * 109.47475 * 329.99995 * 13 11 9 17 17 C 1.50696 * 109.46932 * 294.88651 * 4 2 1 18 18 C 1.38656 * 119.76850 * 279.72184 * 17 4 2 19 19 C 1.37760 * 120.39436 * 179.76591 * 18 17 4 20 20 C 1.39546 * 119.73193 * 0.51262 * 19 18 17 21 21 N 1.36152 * 133.70782 * 179.74708 * 20 19 18 22 22 C 1.30623 * 108.71311 * 179.97438 * 21 20 19 23 23 O 1.35190 * 124.92897 * 180.02562 * 22 21 20 24 24 O 1.34382 * 110.14059 * 359.97438 * 22 21 20 25 25 C 1.35267 * 108.18543 * 0.02562 * 24 22 21 26 26 C 1.38004 * 119.77020 * 99.99989 * 17 4 2 27 27 H 1.08992 * 109.47166 * 65.71418 * 1 2 3 28 28 H 1.09002 * 109.46570 * 185.70509 * 1 2 3 29 29 H 1.08991 * 109.47102 * 305.70726 * 1 2 3 30 30 H 1.09004 * 109.46864 * 240.00608 * 2 1 3 31 31 H 1.08993 * 109.46966 * 59.99958 * 3 2 1 32 32 H 1.09001 * 109.46873 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47066 * 300.00276 * 3 2 1 34 34 H 1.00895 * 110.99999 * 37.23080 * 6 4 2 35 35 H 1.09005 * 109.47392 * 299.96251 * 7 6 4 36 36 H 1.09006 * 109.47180 * 59.96219 * 7 6 4 37 37 H 1.08996 * 109.47081 * 300.00516 * 8 7 6 38 38 H 1.09006 * 109.46999 * 59.99932 * 8 7 6 39 39 H 0.97000 * 120.00465 * 180.02562 * 12 11 9 40 40 H 1.07995 * 119.79846 * 0.02804 * 18 17 4 41 41 H 1.07991 * 120.13512 * 180.23625 * 19 18 17 42 42 H 0.96702 * 113.99992 * 89.97634 * 23 22 21 43 43 H 1.08004 * 120.05237 * 0.02562 * 26 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6040 -1.7190 1.2961 6 7 3.5040 -0.8291 1.1889 7 6 3.9133 -2.0319 0.4519 8 6 5.4408 -2.1092 0.4098 9 6 5.8608 -3.3429 -0.3469 10 1 5.1131 -4.0054 -0.7572 11 6 7.1997 -3.6259 -0.5154 12 7 7.5662 -4.7027 -1.1752 13 14 8.4930 -2.4804 0.1950 14 1 8.8306 -2.9106 1.5757 15 1 9.7131 -2.5266 -0.6502 16 1 7.9634 -1.0934 0.2243 17 6 1.6439 0.0585 2.4764 18 6 2.3867 1.1652 2.8584 19 6 2.0332 1.8902 3.9752 20 6 0.9270 1.5009 4.7315 21 7 0.3385 1.9892 5.8580 22 6 -0.6885 1.2381 6.1535 23 8 -1.5080 1.4290 7.2117 24 8 -0.8130 0.2490 5.2525 25 6 0.1809 0.3780 4.3440 26 6 0.5477 -0.3373 3.2154 27 1 -0.3633 0.4226 -0.9367 28 1 -0.3632 -1.0226 0.1022 29 1 -0.3633 0.5997 0.8344 30 1 1.8934 -0.5138 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.9112 0.0000 0.7829 35 1 3.5186 -2.9165 0.9519 36 1 3.5236 -1.9852 -0.5651 37 1 5.8357 -1.2248 -0.0900 38 1 5.8303 -2.1561 1.4268 39 1 8.5081 -4.9021 -1.2935 40 1 3.2450 1.4631 2.2745 41 1 2.6125 2.7537 4.2667 42 1 -2.2656 2.0001 7.0245 43 1 -0.0233 -1.2033 2.9146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346828682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:29 Heat of formation + Delta-G solvation = -32.564742 kcal Electronic energy + Delta-G solvation = -24586.653832 eV Core-core repulsion = 21018.433707 eV Total energy + Delta-G solvation = -3568.220125 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.30482 -40.66567 -38.97352 -37.76289 -35.99847 -35.34139 -34.27222 -31.92383 -31.71010 -30.17898 -28.12479 -26.92469 -25.01556 -24.66081 -23.38022 -22.99555 -22.20498 -20.94308 -20.14393 -19.00569 -18.78425 -18.33319 -17.77991 -16.96700 -16.34505 -16.25265 -15.94153 -15.75067 -15.20630 -15.08538 -14.86725 -14.74102 -14.68819 -14.19325 -13.65928 -13.44779 -13.26066 -13.20890 -13.08898 -12.89823 -12.86893 -12.54589 -12.31251 -12.16549 -11.90375 -11.77330 -11.69960 -11.67766 -11.57531 -11.37560 -11.35097 -10.74487 -9.78208 -9.40936 -9.20421 -8.27309 -6.31392 -0.43607 0.19910 0.86560 1.21280 1.40457 1.40791 1.53209 2.39020 2.39179 2.56961 3.08974 3.26945 3.43241 3.73581 3.88180 3.95393 3.99541 4.12653 4.21944 4.25228 4.35145 4.50181 4.55863 4.68343 4.74728 4.77748 4.84779 4.94994 5.00832 5.01190 5.06356 5.06422 5.23259 5.24498 5.30076 5.39556 5.44638 5.48752 5.56406 5.63391 5.67855 6.15320 6.22219 6.28487 6.41466 6.56422 6.78040 7.33561 8.89329 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.003083 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.971438 B = 9080.068773 C = 9639.499138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.154 4.154 4 C 0.131 3.869 5 H 0.085 0.915 6 N -0.685 5.685 7 C 0.089 3.911 8 C -0.005 4.005 9 C -0.531 4.531 10 H 0.032 0.968 11 C 0.004 3.996 12 N -0.953 5.953 13 Si 0.953 3.047 14 H -0.271 1.271 15 H -0.287 1.287 16 H -0.242 1.242 17 C -0.023 4.023 18 C -0.086 4.086 19 C -0.067 4.067 20 C 0.006 3.994 21 N -0.489 5.489 22 C 0.418 3.582 23 O -0.407 6.407 24 O -0.235 6.235 25 C 0.004 3.996 26 C -0.091 4.091 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.346 0.654 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.266 0.734 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.445 0.555 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.576 17.919 9.710 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.211 4.211 4 C 0.021 3.979 5 H 0.104 0.896 6 N -0.317 5.317 7 C -0.039 4.039 8 C -0.043 4.043 9 C -0.569 4.569 10 H 0.051 0.949 11 C -0.193 4.193 12 N -0.593 5.593 13 Si 0.776 3.224 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.165 1.165 17 C -0.024 4.024 18 C -0.106 4.106 19 C -0.086 4.086 20 C -0.105 4.105 21 N -0.233 5.233 22 C 0.168 3.832 23 O -0.219 6.219 24 O -0.130 6.130 25 C -0.045 4.045 26 C -0.110 4.110 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.310 0.690 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.903 17.670 10.951 28.098 hybrid contribution -0.229 -0.381 -1.136 1.220 sum -19.132 17.290 9.815 27.592 Atomic orbital electron populations 1.21787 0.93753 1.02104 1.02242 1.21714 0.97512 0.97503 0.97168 1.22046 1.01104 0.95093 1.02894 1.20533 0.88279 0.98167 0.90966 0.89641 1.60581 1.07399 1.05900 1.57784 1.21630 0.95745 0.91810 0.94745 1.19437 0.93731 0.95075 0.96030 1.21429 0.92437 1.08592 1.34464 0.94931 1.26002 1.01322 0.96799 0.95165 1.70065 1.17345 1.28252 1.43682 0.85621 0.77741 0.80747 0.78275 1.19669 1.21264 1.16471 1.19596 0.92518 0.94973 0.95273 1.21106 0.99626 0.93949 0.95889 1.20496 0.93672 1.00951 0.93436 1.19843 1.00094 0.96127 0.94476 1.70997 1.09567 1.27619 1.15163 1.22606 0.91503 0.83827 0.85311 1.84892 1.41463 1.72554 1.22972 1.84453 1.46424 1.48844 1.33252 1.20065 0.90755 0.99975 0.93687 1.19773 0.98810 1.00814 0.91605 0.91926 0.92421 0.92374 0.91424 0.91264 0.92359 0.91749 0.83281 0.92678 0.95798 0.95949 0.96167 0.92558 0.82939 0.82964 0.68991 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.76 71.98 0.63 -1.70 16 2 C -0.12 -2.31 2.79 -10.79 -0.03 -2.34 16 3 C -0.15 -2.59 7.77 71.98 0.56 -2.03 16 4 C 0.13 2.97 2.09 44.17 0.09 3.06 16 5 H 0.09 2.04 7.62 -2.39 -0.02 2.02 16 6 N -0.68 -19.30 5.66 -495.46 -2.81 -22.10 16 7 C 0.09 3.28 5.42 86.30 0.47 3.75 16 8 C 0.00 -0.22 4.30 29.85 0.13 -0.09 16 9 C -0.53 -30.15 9.66 25.60 0.25 -29.90 16 10 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 11 C 0.00 0.22 5.47 84.66 0.46 0.68 16 12 N -0.95 -59.68 13.96 21.45 0.30 -59.39 16 13 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 15 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 17 C -0.02 -0.48 3.88 -19.82 -0.08 -0.56 16 18 C -0.09 -1.74 6.95 22.26 0.15 -1.59 16 19 C -0.07 -1.40 10.10 22.47 0.23 -1.18 16 20 C 0.01 0.15 7.23 39.28 0.28 0.43 16 21 N -0.49 -12.27 11.38 -422.73 -4.81 -17.08 16 22 C 0.42 8.87 9.54 130.42 1.24 10.11 16 23 O -0.41 -5.36 13.62 -62.43 -0.85 -6.21 16 24 O -0.24 -5.55 10.78 9.24 0.10 -5.45 16 25 C 0.00 0.11 7.42 22.84 0.17 0.28 16 26 C -0.09 -1.97 8.92 22.29 0.20 -1.78 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.94 7.12 -2.39 -0.02 0.93 16 30 H 0.07 1.51 7.48 -2.38 -0.02 1.49 16 31 H 0.07 1.10 5.66 -2.39 -0.01 1.09 16 32 H 0.06 0.99 6.25 -2.39 -0.01 0.97 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.35 8.81 5.95 -89.70 -0.53 8.28 16 35 H 0.05 2.13 8.06 -2.38 -0.02 2.11 16 36 H 0.02 0.88 7.48 -2.38 -0.02 0.86 16 37 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 38 H 0.02 0.92 7.57 -2.38 -0.02 0.90 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 40 H 0.15 2.68 6.41 -2.91 -0.02 2.66 16 41 H 0.15 2.61 8.06 -2.92 -0.02 2.59 16 42 H 0.44 0.03 9.06 -74.06 -0.67 -0.64 16 43 H 0.15 2.72 8.03 -2.91 -0.02 2.70 16 Total: -1.00 -72.47 346.57 -1.63 -74.10 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -0.21 Total: 13.05 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 4.76 Total: -22.85 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -7.31 Total: -98.57 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.75 Total: -11.66 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -72.47 -1.63 -74.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346828682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.534 kcal (2) G-P(sol) polarization free energy of solvation -72.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds