Wall clock time and date at job start Tue Mar 31 2020 08:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.30996 * 120.00352 * 2 1 4 4 C 1.50711 * 119.99619 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46728 * 125.00290 * 4 3 2 6 6 H 1.08997 * 109.47635 * 55.00388 * 5 4 3 7 7 C 1.52999 * 109.46780 * 175.00122 * 5 4 3 8 8 O 1.42902 * 109.47555 * 54.99660 * 7 5 4 9 9 N 1.46498 * 109.47073 * 294.99432 * 5 4 3 10 10 C 1.34778 * 119.99650 * 155.00289 * 9 5 4 11 11 O 1.21576 * 120.00261 * 0.02562 * 10 9 5 12 12 N 1.34785 * 119.99554 * 180.02562 * 10 9 5 13 13 C 1.39241 * 119.99514 * 174.58307 * 12 10 9 14 14 C 1.39481 * 119.83651 * 326.70028 * 13 12 10 15 15 C 1.36381 * 120.16698 * 179.76313 * 14 13 12 16 16 C 1.40861 * 119.82702 * 0.50786 * 15 14 13 17 17 C 1.41159 * 120.16266 * 179.71966 * 16 15 14 18 18 H 1.07997 * 120.00109 * 156.07623 * 17 16 15 19 19 C 1.39893 * 120.00294 * 336.08058 * 17 16 15 20 20 N 1.30887 * 119.99661 * 340.64402 * 19 17 16 21 21 Si 1.86791 * 120.00376 * 160.63841 * 19 17 16 22 22 H 1.48498 * 109.47368 * 94.72764 * 21 19 17 23 23 H 1.48505 * 109.47215 * 214.73055 * 21 19 17 24 24 H 1.48505 * 109.47505 * 334.72763 * 21 19 17 25 25 C 1.40875 * 119.67634 * 359.74376 * 16 15 14 26 26 C 1.36365 * 119.82460 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47397 * 300.00297 * 1 2 3 28 28 H 1.09002 * 109.47359 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46995 * 59.99971 * 1 2 3 30 30 H 1.08000 * 120.00105 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00862 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47050 * 244.99763 * 4 3 2 33 33 H 1.08996 * 109.46932 * 4.99985 * 4 3 2 34 34 H 1.08999 * 109.47293 * 174.99847 * 7 5 4 35 35 H 1.09006 * 109.46850 * 294.99751 * 7 5 4 36 36 H 0.96691 * 114.00344 * 180.02562 * 8 7 5 37 37 H 0.97002 * 119.99959 * 335.00814 * 9 5 4 38 38 H 0.97000 * 120.00242 * 354.58406 * 12 10 9 39 39 H 1.07996 * 119.91825 * 0.02562 * 14 13 12 40 40 H 1.07995 * 120.08102 * 180.25199 * 15 14 13 41 41 H 0.96998 * 119.99579 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.08584 * 179.97438 * 25 16 15 43 43 H 1.08006 * 119.91843 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 1.4084 2.4396 -0.0006 5 6 1.8696 3.2952 1.1810 6 1 2.9519 3.4183 1.1401 7 6 1.1973 4.6677 1.1099 8 8 -0.2205 4.5010 1.0461 9 7 1.5002 2.6350 2.4356 10 6 2.1954 2.8905 3.5616 11 8 3.1288 3.6691 3.5363 12 7 1.8558 2.2827 4.7157 13 6 2.6409 2.4583 5.8521 14 6 4.0207 2.6179 5.7245 15 6 4.7955 2.7952 6.8328 16 6 4.2002 2.8061 8.1094 17 6 4.9962 2.9831 9.2616 18 1 4.5556 3.3717 10.1678 19 6 6.3558 2.6553 9.2297 20 7 6.8139 1.8527 8.3028 21 14 7.5176 3.3632 10.5097 22 1 7.6688 2.3985 11.6284 23 1 8.8436 3.6142 9.8898 24 1 6.9642 4.6399 11.0284 25 6 2.8067 2.6389 8.2306 26 6 2.0444 2.4674 7.1130 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 2.0470 -0.9353 0.0004 31 1 3.2420 1.1345 0.0004 32 1 1.6033 2.9712 -0.9320 33 1 0.3402 2.2424 0.0886 34 1 1.4557 5.2453 1.9974 35 1 1.5415 5.1952 0.2202 36 1 -0.7125 5.3320 0.9985 37 1 0.7553 2.0140 2.4558 38 1 1.0645 1.7230 4.7545 39 1 4.4761 2.6053 4.7454 40 1 5.8632 2.9227 6.7320 41 1 7.7565 1.6251 8.2810 42 1 2.3435 2.6458 9.2062 43 1 0.9760 2.3387 7.2042 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352336192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:28 Heat of formation + Delta-G solvation = -47.354214 kcal Electronic energy + Delta-G solvation = -24371.107606 eV Core-core repulsion = 20802.246161 eV Total energy + Delta-G solvation = -3568.861445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.00023 -38.13486 -36.99913 -36.09635 -34.43489 -33.88729 -32.88307 -30.60829 -29.39753 -28.68808 -27.71436 -25.46713 -24.84699 -22.10624 -21.21625 -20.63433 -19.94316 -18.75769 -17.87056 -17.36562 -17.25222 -16.69135 -15.91467 -15.23696 -15.02539 -14.93775 -14.40110 -14.03677 -13.85315 -13.73258 -13.52825 -13.10732 -12.90383 -12.64007 -12.46028 -12.18019 -11.97264 -11.87280 -11.78998 -11.29646 -11.14078 -11.07611 -11.02468 -10.81526 -10.61778 -10.14357 -9.94093 -9.63399 -9.44525 -9.11694 -9.05724 -8.85790 -8.74966 -7.44778 -6.91945 -6.67692 -4.21919 2.10311 2.73910 3.09064 3.10766 3.14872 3.16411 3.23732 3.79266 3.97700 4.20463 4.58617 4.68982 4.73805 4.88154 4.98704 5.09599 5.22710 5.30287 5.36046 5.46641 5.62857 5.67858 5.76065 5.78970 5.80801 6.08658 6.21845 6.44678 6.54098 6.66957 6.77447 6.90502 6.93183 7.11448 7.17513 7.37146 7.44146 7.47447 7.68602 7.94603 8.08168 8.12433 8.33342 8.59959 8.69621 8.94990 9.00255 9.21758 10.22981 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.002901 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.481638 B = 9650.489708 C = 9858.568555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.167 4.167 3 C -0.155 4.155 4 C -0.100 4.100 5 C 0.175 3.825 6 H 0.099 0.901 7 C 0.060 3.940 8 O -0.570 6.570 9 N -0.737 5.737 10 C 0.696 3.304 11 O -0.582 6.582 12 N -0.667 5.667 13 C 0.016 3.984 14 C -0.086 4.086 15 C -0.156 4.156 16 C 0.104 3.896 17 C -0.460 4.460 18 H 0.077 0.923 19 C 0.076 3.924 20 N -0.790 5.790 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.215 4.215 26 C -0.108 4.108 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.376 0.624 37 H 0.392 0.608 38 H 0.389 0.611 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.280 0.720 42 H 0.095 0.905 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 -0.329 -15.807 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.185 4.185 3 C -0.173 4.173 4 C -0.137 4.137 5 C 0.069 3.931 6 H 0.117 0.883 7 C -0.019 4.019 8 O -0.375 6.375 9 N -0.393 5.393 10 C 0.396 3.604 11 O -0.460 6.460 12 N -0.312 5.312 13 C -0.077 4.077 14 C -0.106 4.106 15 C -0.175 4.175 16 C 0.101 3.899 17 C -0.490 4.490 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.416 5.416 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.236 4.236 26 C -0.129 4.129 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.222 0.778 37 H 0.226 0.774 38 H 0.222 0.778 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.673 -0.377 -15.904 18.618 hybrid contribution -0.200 0.236 0.570 0.648 sum -9.873 -0.141 -15.334 18.238 Atomic orbital electron populations 1.20855 0.93430 1.01931 1.01846 1.22775 0.96160 0.97865 1.01664 1.22807 0.99691 0.94153 1.00636 1.20990 1.01137 0.94127 0.97484 1.20754 0.99703 0.89897 0.82729 0.88265 1.22745 0.81046 0.97753 1.00328 1.86434 1.18179 1.35396 1.97500 1.45022 1.36738 1.49986 1.07539 1.16015 0.82766 0.81117 0.80465 1.90904 1.31295 1.38997 1.84767 1.42102 1.29632 1.50871 1.08638 1.16972 0.89910 1.16984 0.83818 1.20439 0.91443 1.00477 0.98276 1.20954 0.99632 1.05760 0.91202 1.17638 0.91099 0.88111 0.93059 1.19513 0.93132 1.38028 0.98303 0.90474 1.25912 0.99158 0.92815 0.96329 1.69870 1.16146 1.24350 1.31199 0.86350 0.79392 0.80515 0.80755 1.19651 1.20059 1.18436 1.20495 0.94660 1.12532 0.95880 1.19988 0.96988 1.04045 0.91832 0.91658 0.92410 0.91805 0.87534 0.87362 0.89880 0.89545 0.92609 0.93133 0.77812 0.77420 0.77775 0.87967 0.86397 0.90922 0.88727 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.65 36.00 0.31 -0.66 16 2 C -0.17 -1.55 10.26 -36.03 -0.37 -1.92 16 3 C -0.15 -1.53 9.25 -36.02 -0.33 -1.87 16 4 C -0.10 -0.93 4.72 -27.88 -0.13 -1.06 16 5 C 0.18 2.07 2.36 -67.93 -0.16 1.91 16 6 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 7 C 0.06 0.65 6.85 37.16 0.25 0.91 16 8 O -0.57 -5.54 12.83 -35.23 -0.45 -5.99 16 9 N -0.74 -9.96 4.74 -58.68 -0.28 -10.23 16 10 C 0.70 12.83 8.25 -86.91 -0.72 12.12 16 11 O -0.58 -13.14 13.66 5.30 0.07 -13.06 16 12 N -0.67 -12.37 5.32 -14.10 -0.07 -12.45 16 13 C 0.02 0.37 6.29 -83.57 -0.53 -0.16 16 14 C -0.09 -2.21 8.57 -39.79 -0.34 -2.56 16 15 C -0.16 -4.27 8.65 -39.26 -0.34 -4.61 16 16 C 0.10 2.84 5.58 -106.80 -0.60 2.24 16 17 C -0.46 -12.45 9.03 -37.85 -0.34 -12.79 16 18 H 0.08 1.99 7.92 -52.49 -0.42 1.58 16 19 C 0.08 1.94 5.10 -17.33 -0.09 1.85 16 20 N -0.79 -20.92 11.00 55.55 0.61 -20.30 16 21 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.22 -5.36 9.74 -39.26 -0.38 -5.74 16 26 C -0.11 -2.45 9.89 -39.79 -0.39 -2.84 16 27 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 7.85 -51.93 -0.41 0.06 16 30 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.80 5.38 -51.93 -0.28 0.52 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.38 2.19 9.12 45.56 0.42 2.61 16 37 H 0.39 4.51 8.62 -40.82 -0.35 4.16 16 38 H 0.39 5.79 8.83 -40.82 -0.36 5.43 16 39 H 0.10 2.65 6.39 -52.49 -0.34 2.32 16 40 H 0.12 3.35 6.17 -52.49 -0.32 3.03 16 41 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 42 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 43 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -32.02 360.26 -9.24 -41.26 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -5.37 Total: 16.53 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -4.15 Total: -15.17 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.26 Total: -42.99 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.38 Total: -19.06 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.02 -9.24 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352336192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.092 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds