Wall clock time and date at job start Tue Mar 31 2020 08:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.30996 * 120.00352 * 2 1 4 4 C 1.50711 * 119.99619 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46728 * 125.00290 * 4 3 2 6 6 H 1.08997 * 109.47635 * 55.00388 * 5 4 3 7 7 C 1.52999 * 109.46780 * 175.00122 * 5 4 3 8 8 O 1.42902 * 109.47555 * 54.99660 * 7 5 4 9 9 N 1.46498 * 109.47073 * 294.99432 * 5 4 3 10 10 C 1.34778 * 119.99650 * 155.00289 * 9 5 4 11 11 O 1.21576 * 120.00261 * 0.02562 * 10 9 5 12 12 N 1.34785 * 119.99554 * 180.02562 * 10 9 5 13 13 C 1.39241 * 119.99514 * 174.58307 * 12 10 9 14 14 C 1.39481 * 119.83651 * 326.70028 * 13 12 10 15 15 C 1.36381 * 120.16698 * 179.76313 * 14 13 12 16 16 C 1.40861 * 119.82702 * 0.50786 * 15 14 13 17 17 C 1.41159 * 120.16266 * 179.71966 * 16 15 14 18 18 H 1.07997 * 120.00109 * 156.07623 * 17 16 15 19 19 C 1.39893 * 120.00294 * 336.08058 * 17 16 15 20 20 N 1.30887 * 119.99661 * 340.64402 * 19 17 16 21 21 Si 1.86791 * 120.00376 * 160.63841 * 19 17 16 22 22 H 1.48498 * 109.47368 * 94.72764 * 21 19 17 23 23 H 1.48505 * 109.47215 * 214.73055 * 21 19 17 24 24 H 1.48505 * 109.47505 * 334.72763 * 21 19 17 25 25 C 1.40875 * 119.67634 * 359.74376 * 16 15 14 26 26 C 1.36365 * 119.82460 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.47397 * 300.00297 * 1 2 3 28 28 H 1.09002 * 109.47359 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46995 * 59.99971 * 1 2 3 30 30 H 1.08000 * 120.00105 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00862 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47050 * 244.99763 * 4 3 2 33 33 H 1.08996 * 109.46932 * 4.99985 * 4 3 2 34 34 H 1.08999 * 109.47293 * 174.99847 * 7 5 4 35 35 H 1.09006 * 109.46850 * 294.99751 * 7 5 4 36 36 H 0.96691 * 114.00344 * 180.02562 * 8 7 5 37 37 H 0.97002 * 119.99959 * 335.00814 * 9 5 4 38 38 H 0.97000 * 120.00242 * 354.58406 * 12 10 9 39 39 H 1.07996 * 119.91825 * 0.02562 * 14 13 12 40 40 H 1.07995 * 120.08102 * 180.25199 * 15 14 13 41 41 H 0.96998 * 119.99579 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.08584 * 179.97438 * 25 16 15 43 43 H 1.08006 * 119.91843 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 1.4084 2.4396 -0.0006 5 6 1.8696 3.2952 1.1810 6 1 2.9519 3.4183 1.1401 7 6 1.1973 4.6677 1.1099 8 8 -0.2205 4.5010 1.0461 9 7 1.5002 2.6350 2.4356 10 6 2.1954 2.8905 3.5616 11 8 3.1288 3.6691 3.5363 12 7 1.8558 2.2827 4.7157 13 6 2.6409 2.4583 5.8521 14 6 4.0207 2.6179 5.7245 15 6 4.7955 2.7952 6.8328 16 6 4.2002 2.8061 8.1094 17 6 4.9962 2.9831 9.2616 18 1 4.5556 3.3717 10.1678 19 6 6.3558 2.6553 9.2297 20 7 6.8139 1.8527 8.3028 21 14 7.5176 3.3632 10.5097 22 1 7.6688 2.3985 11.6284 23 1 8.8436 3.6142 9.8898 24 1 6.9642 4.6399 11.0284 25 6 2.8067 2.6389 8.2306 26 6 2.0444 2.4674 7.1130 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 2.0470 -0.9353 0.0004 31 1 3.2420 1.1345 0.0004 32 1 1.6033 2.9712 -0.9320 33 1 0.3402 2.2424 0.0886 34 1 1.4557 5.2453 1.9974 35 1 1.5415 5.1952 0.2202 36 1 -0.7125 5.3320 0.9985 37 1 0.7553 2.0140 2.4558 38 1 1.0645 1.7230 4.7545 39 1 4.4761 2.6053 4.7454 40 1 5.8632 2.9227 6.7320 41 1 7.7565 1.6251 8.2810 42 1 2.3435 2.6458 9.2062 43 1 0.9760 2.3387 7.2042 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352336192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:27 Heat of formation + Delta-G solvation = -69.631580 kcal Electronic energy + Delta-G solvation = -24372.073625 eV Core-core repulsion = 20802.246161 eV Total energy + Delta-G solvation = -3569.827464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46197 -39.54808 -38.43644 -36.85563 -36.15826 -35.09726 -34.62280 -31.81143 -31.34078 -30.39437 -28.50820 -26.71243 -26.20885 -23.61881 -23.07921 -21.98103 -21.47562 -19.73979 -19.26058 -19.06685 -18.33088 -18.04135 -17.20862 -16.86127 -16.33994 -15.94811 -15.73330 -15.65009 -15.15551 -14.86670 -14.66693 -14.49920 -14.26872 -13.93364 -13.75294 -13.64291 -13.38167 -13.15378 -13.00891 -12.86748 -12.75727 -12.53850 -12.37725 -11.98708 -11.77145 -11.56563 -11.50483 -11.21253 -10.98911 -10.87858 -10.66654 -10.05858 -9.80443 -9.42726 -8.81888 -8.57337 -6.22856 0.89417 1.16725 1.35109 1.38496 1.47380 1.54883 1.82530 2.20980 2.25956 2.78539 3.39375 3.43687 3.76961 3.80206 4.03667 4.22834 4.34494 4.43060 4.45142 4.48789 4.55023 4.57748 4.77048 4.85582 4.88441 4.97067 4.99836 5.11237 5.18111 5.20475 5.31610 5.32074 5.47348 5.59784 5.67919 5.78947 5.83984 5.98215 6.11287 6.15322 6.25810 6.38823 6.70658 6.88484 6.95182 7.04535 7.20369 7.71942 8.34382 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.002901 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.481638 B = 9650.489708 C = 9858.568555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.163 4.163 3 C -0.172 4.172 4 C -0.085 4.085 5 C 0.168 3.832 6 H 0.078 0.922 7 C 0.069 3.931 8 O -0.575 6.575 9 N -0.714 5.714 10 C 0.693 3.307 11 O -0.626 6.626 12 N -0.660 5.660 13 C 0.029 3.971 14 C -0.100 4.100 15 C -0.180 4.180 16 C 0.072 3.928 17 C -0.496 4.496 18 H 0.080 0.920 19 C 0.032 3.968 20 N -0.825 5.825 21 Si 0.982 3.018 22 H -0.259 1.259 23 H -0.269 1.269 24 H -0.258 1.258 25 C -0.223 4.223 26 C -0.102 4.102 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.394 0.606 37 H 0.406 0.594 38 H 0.411 0.589 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.287 0.713 42 H 0.110 0.890 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 -0.486 -16.441 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.182 4.182 3 C -0.191 4.191 4 C -0.122 4.122 5 C 0.063 3.937 6 H 0.096 0.904 7 C -0.010 4.010 8 O -0.382 6.382 9 N -0.370 5.370 10 C 0.394 3.606 11 O -0.507 6.507 12 N -0.307 5.307 13 C -0.065 4.065 14 C -0.120 4.120 15 C -0.200 4.200 16 C 0.069 3.931 17 C -0.525 4.525 18 H 0.098 0.902 19 C -0.183 4.183 20 N -0.451 5.451 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.182 1.182 25 C -0.243 4.243 26 C -0.122 4.122 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.043 0.957 35 H 0.095 0.905 36 H 0.243 0.757 37 H 0.242 0.758 38 H 0.248 0.752 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.936 -0.558 -16.589 20.445 hybrid contribution 0.340 0.242 0.596 0.728 sum -11.596 -0.315 -15.993 19.757 Atomic orbital electron populations 1.20891 0.92075 1.02759 1.02345 1.22970 0.97247 0.97611 1.00328 1.22823 0.99329 0.94848 1.02061 1.20897 1.01197 0.93354 0.96779 1.20947 0.98915 0.91217 0.82662 0.90424 1.22533 0.81868 0.96501 1.00132 1.86379 1.17388 1.37050 1.97430 1.44870 1.36067 1.49478 1.06592 1.16199 0.82514 0.80630 0.81270 1.90885 1.33357 1.40964 1.85489 1.41889 1.29859 1.51397 1.07592 1.17018 0.89294 1.14579 0.85659 1.20447 0.93003 1.01385 0.97170 1.20839 0.98875 1.08034 0.92271 1.17972 0.92692 0.89320 0.93103 1.19788 0.94532 1.39686 0.98527 0.90190 1.26814 1.00382 0.92498 0.98558 1.69933 1.16894 1.25291 1.32997 0.85205 0.76877 0.79704 0.77992 1.18353 1.19397 1.18185 1.20780 0.93938 1.12065 0.97525 1.20335 0.98979 1.02265 0.90666 0.91404 0.91551 0.90888 0.87563 0.88572 0.88137 0.88705 0.95694 0.90540 0.75652 0.75774 0.75216 0.89136 0.88702 0.90262 0.87182 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 8.65 71.23 0.62 -0.99 16 2 C -0.16 -2.74 10.26 25.65 0.26 -2.48 16 3 C -0.17 -3.20 9.25 25.65 0.24 -2.96 16 4 C -0.09 -1.40 4.72 29.85 0.14 -1.26 16 5 C 0.17 3.79 2.36 44.99 0.11 3.89 16 6 H 0.08 2.12 7.58 -2.39 -0.02 2.11 16 7 C 0.07 1.38 6.85 71.98 0.49 1.87 16 8 O -0.57 -9.56 12.83 -148.98 -1.91 -11.47 16 9 N -0.71 -18.32 4.74 -457.82 -2.17 -20.49 16 10 C 0.69 25.24 8.25 179.05 1.48 26.71 16 11 O -0.63 -28.91 13.66 -3.95 -0.05 -28.96 16 12 N -0.66 -23.52 5.32 -316.77 -1.68 -25.21 16 13 C 0.03 1.31 6.29 38.57 0.24 1.55 16 14 C -0.10 -5.30 8.57 22.14 0.19 -5.11 16 15 C -0.18 -10.37 8.65 22.48 0.19 -10.17 16 16 C 0.07 4.05 5.58 -21.27 -0.12 3.93 16 17 C -0.50 -27.58 9.03 23.39 0.21 -27.37 16 18 H 0.08 4.22 7.92 -2.91 -0.02 4.20 16 19 C 0.03 1.69 5.10 85.23 0.44 2.12 16 20 N -0.83 -45.26 11.00 21.82 0.24 -45.02 16 21 Si 0.98 39.55 29.60 68.60 2.03 41.58 16 22 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 23 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 25 C -0.22 -11.02 9.74 22.48 0.22 -10.80 16 26 C -0.10 -4.45 9.89 22.13 0.22 -4.23 16 27 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.83 7.85 -2.39 -0.02 0.81 16 30 H 0.11 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.10 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.44 5.38 -2.39 -0.01 1.43 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.39 3.46 9.12 -74.06 -0.68 2.79 16 37 H 0.41 8.31 8.62 -92.71 -0.80 7.51 16 38 H 0.41 11.06 8.83 -92.71 -0.82 10.24 16 39 H 0.09 4.94 6.39 -2.91 -0.02 4.92 16 40 H 0.09 5.77 6.17 -2.91 -0.02 5.75 16 41 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 42 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 43 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -72.26 360.26 0.14 -72.13 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -1.24 Total: 42.74 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.93 Total: -25.29 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -3.62 Total: -90.72 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.96 Total: -40.43 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -72.26 0.14 -72.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352336192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.495 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds